BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489059
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22070.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2699 0.0
> AT5G22070.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:7307894-7310367
FORWARD LENGTH=1883
Length=1883
Score = 2699 bits (1461), Expect = 0.0
Identities = 1764/1901 (93%), Gaps = 57/1901 (3%)
Strand=Plus/Plus
Query 1 ACAATCTGAGATCTGAAAGATATTTTCTAAAATCTCATTAAATT-CCCCATAAAGTTTCA 59
|||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |||||
Sbjct 1 ACAATCTGAGATCTGAAAGATA-TTTCTAAATTCTCATTAAATTCCCCCATAAATTTTCA 59
Query 60 ATCTTTGCTGATTTTCCCCCAAATTTTCT-G-G--AGATAACCTTCGTTTTT-AGAGCGT 114
||||||||||||||||||||||| ||||| | | ||||||||||||||||| || | ||
Sbjct 60 ATCTTTGCTGATTTTCCCCCAAA-TTTCTGGAGATAGATAACCTTCGTTTTTCAG-GAGT 117
Query 115 TTCTTTCTAAATTTCTTTCATCGATTTCGTCCAAGTTTTTGAGAGAGG-T--TCGACGGA 171
||||||||| ||||| |||||||||||||| | ||| ||||||||||| | |||||| |
Sbjct 118 TTCTTTCTATATTTC-TTCATCGATTTCGTTC-AGTCTTTGAGAGAGGTTCGTCGACGTA 175
Query 172 TTATCGTCGG--AAAAGCTATGAGAATCTGTTTCTCATAGCTCCAGTAATGTGAAATCCA 229
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 176 TTATCGTCGGAAAAAAGCTATGAGAATCTATTTCTCATAGCTCCAGTAATGTGAAATCGA 235
Query 230 GAAAACGCTTTATCTTCAGAATCTGCCGATTCATGGGAGATTCACGCACATTCCGGTAGA 289
|| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 236 GACAACGCTTTATCTTCAGAATCTGCTAATCCATGGGAGATTCAATCACATTCCGGTAGA 295
Query 290 ---TTTTCCAGTTTCTGGGGAAGTC--AAATTTCTAGGGTTTCCGA-TTTTGTTTT--GG 341
|||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 296 TTTTTTTCCAGTTTCTGGGGAAGTCAAAAATTTCTAGGGTTTCCGATTTTTGTTTTCCTT 355
Query 342 TTCCAAATGTTCTCGAATCAGTTTGttctcttcttctcttttcttctatgtctcccattc 401
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 356 TTCCAAATGTTCTCGAATCAGTTTGTTCTCTTCTTCTCTCTTCTCCTATGTCTCCCATTT 415
Query 402 gtcttcttcttTGTAGCGCCACATGT-TTTCCCTTCTCCTCCTGGTGAATCTTTAATTCC 460
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct 416 GTTTTCTTCTTTGTAGCGCCACATGTGTTT-CCTTCTCCTCCTGGTGAATCTTTAATCCC 474
Query 461 AATCTCCGATGAGATTGATGACCGGAGTTTATTCATCGCCGCTGCTGGGTCAACCTCTCT 520
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 475 AATCTCCGATGAGATTGATGACCGGAGTTTATTCATCGCCGCTGCTGGATCAACCTCTCT 534
Query 521 TTCCCATCTTTCATCTGGAAACCCTAACCCTAAGCTCAAGATTGCTTTTTTATTCCTCAC 580
||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 535 TTCTCATCTCTCATCTGGAAACCCTAACCCTAAGCTCAAGATTGCTTTTCTATTCCTCAC 594
Query 581 CAACTCCGATCTCCATTTCGCGCCAATCTGGGATCGGTTCTTCTCTGGTCATTCTAAATC 640
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 595 CAACTCCGATCTCCATTTCGCGCCAATCTGGGATCGATTCTTCTCTGGTCATTCGAAATC 654
Query 641 GCTTTACAACGTCTATGTCCACGCAGATCCTTTTGTCAATGTCACAAGACCTGGGAATGG 700
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCTCTACAACGTCTATGTCCACGCAGATCCTTTTGTCAATGTCACAAGACCTGGGAATGG 714
Query 701 CTCTGTGTTTGAGAATGCCTTCATTGCAAACGCTAAACGCACTGCACGAGCCTCTCCGAC 760
||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||
Sbjct 715 CTCTGTGTTTGAGAATGCCTTCATTGCAAACGCGAAACGCACCGCAAGAGCTTCTCCGAC 774
Query 761 TCTGATCTCCGCCACGCGGCGCCTCCTCGCCACCGCCTTCCTTGACGACCCTGCGAACAC 820
||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 775 TCTTATCTCCGCCACGCGGCGCCTCCTCGCTACCGCTTTCCTTGATGACCCTGCGAACAC 834
Query 821 TTACTTCGCTGTGCTGTCTCAGTATTGCATTCCTCTCCACTCCTTTAACTATGTTTATAG 880
||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 835 TTACTTCGCTGTGCTCTCTCAGTATTGTATTCCTCTCCACTCGTTCAACTATGTTTATAG 894
Query 881 CTCTCTCTTTGAATCTTCCACTTTTGATAAATCTGATCCGGATCC-AACTCCGAATCCGA 939
|||||||||||||||||| | |||||||||||||||||||||||| || |||||||||||
Sbjct 895 CTCTCTCTTTGAATCTTCAATTTTTGATAAATCTGATCCGGATCCGAA-TCCGAATCCGA 953
Query 940 GAGGTATTCGAATCTTGTATCGGAGTTTTATGGAACTGATATCCGATGAGCCGAGGCTTT 999
|||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 954 GAGGTATTAGAATCTTGTATCGGAGTTTTATGGAACTGATATCTGATGAGCCTAGGCTTT 1013
Query 1000 GGAAACGGTACACTGCTAGGGGAAGGTATGCTATGATGCCTGAGGTTCCGTTTGAGAAAT 1059
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GGAAACGGTACACTGCTAGAGGAAGGTATGCTATGATGCCTGAGGTTCCGTTTGAGAAAT 1073
Query 1060 TCAGAGTTGGTTCACAGTTCTTTGTTATGACCAGAAGACATGCTTTGCTAACTATCAAAG 1119
||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 1074 TCAGAGTTGGTTCGCAGTTCTTTGTTATGACTAGAAGACATGCTTTGTTAACAATCAAAG 1133
Query 1120 ATC-GATTCTTGTGGCGTAAATTCAAGCTCCCGTGTTATCGTCCTGATGAGTGTTACCCG 1178
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1134 ATCGGA-TCTTGTGGCGTAAATTCAAGCTCCCGTGTTATCGTTCTGATGAGTGTTACCCG 1192
Query 1179 GAGGAGCATTATTTCCCGACGCTGTTGAACATGAAGGATCCAGATGGGTGCACTGGTTAT 1238
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1193 GAGGAGCATTATTTCCCGACGCTGTTGAACATGAAGGATCCGGATGGTTGCACTGGGTAT 1252
Query 1239 ACCCTGACTCGGGTCAACTGGACTGGCACTGTGAAAGGACATCCTTATACCTACAAACCA 1298
|| |||| || || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1253 ACGTTGACGCGAGTTAACTGGACTGGGACTGTGAAAGGACATCCTTATACTTACAAACCA 1312
Query 1299 AAGGAAGTCGTGCCCGAGTTGATTCAGAGACTCCGGCGATCGAATCACTCTAGCTCGTAC 1358
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1313 AAGGAAGTTGTGCCAGAGTTGATCCAGAGACTCCGGCGATCGAATCACTCTAGCTCCTAC 1372
Query 1359 TTTTTCGCCCGTAAATTTACTCCAGCTTGCCTGAAGCCGCTGTTGGCCATTGCAGATTCT 1418
||||||||||| ||||||||||| | |||| |||||||||| ||||||||||||||||||
Sbjct 1373 TTTTTCGCCCGCAAATTTACTCCGGATTGCTTGAAGCCGCTTTTGGCCATTGCAGATTCT 1432
Query 1419 GTGATTTTCAGAGATTAAGTTATGCAGGGTGAGAAAACAAAAGTTTTGGTGACCGGAGAG 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GTGATTTTCAGAGATTAAGTTATGCAGGGTGAGAAAACAAAAGTTTTGGTGACCGGAGAG 1492
Query 1479 GTTTTATGTATGGTTTGAAGAACAAATGCCACTTTCAGGATTAAGAAGGGGCAAAGCCAA 1538
||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||
Sbjct 1493 GTTTTATGTATGGGTTGAAGAACAAATGCCACTTTCAGAATTAAGAAGAGGCAAAGCGAA 1552
Query 1539 ACGATGTTAGGAGGCTTTGAGGCTTGAAATAAATAAACCAGCTTTAGTGGTACTCGGAGC 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 ACGATGTTAGGAGGCTTTGAGGCTTGAAATAAATAAACCAGCTTTAGTGGTACTCGGAGC 1612
Query 1599 TCAGGCTTGTTAGCTGTTGTGACATATATATTTATCACACGACACGAGAACACAGATTAA 1658
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1613 TCAGGCTTGTTAGCTGTTGTGACATATATAT----CACACGACACGAGAACACAGATCAA 1668
Query 1659 GAGACAGAGAAATCC-A-CGTTGTAAT----------Gttttt-tttttgtttttctttt 1705
|||||||||||| || | | ||||||| |||||| |||||||| |||||||
Sbjct 1669 GAGACAGAGAAA-CCGAAC-TTGTAATTTTTTTTTTTGTTTTTCTTTTTGTTCTTCTTTT 1726
Query 1706 tGTTCTTTGGAGCTGGTGCTGTTACATAGCAGAGCTCTTTTCACCTCAAAAGCTTGGGGT 1765
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1727 TGTTCTTTGGAGCTGGTGCTGTTACATAGCAGAGCTCTTTTTACCTCAAAGGCTTGGGGT 1786
Query 1766 CTGTAGCATTATAATTGTGTCAAGGAAATCTATGAAGAGAATATGTTATTTCTTGATCTC 1825
||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1787 CTGTAGCATTATAATTGTGTCAAGGAAATCTATGAAGAGAATATGTTAT--CT----CT- 1839
Query 1826 TTGTGGTGAACACCACATTGAATATATAAAAGATCAAAGTT 1866
| |||||||||||||||||||||||||||||||||||||||
Sbjct 1840 T-GTGGTGAACACCACATTGAATATATAAAAGATCAAAGTT 1879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92419203345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5