BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489063
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22110.1 | Symbols: ATDPB2, CYL2, DPB2 | DNA polymerase epsi... 2608 0.0
AT2G31625.1 | Symbols: | unknown pseudogene | chr2:13453331-13... 741 0.0
> AT5G22110.1 | Symbols: ATDPB2, CYL2, DPB2 | DNA polymerase epsilon
subunit B2 | chr5:7330825-7334205 REVERSE LENGTH=1854
Length=1854
Score = 2608 bits (1412), Expect = 0.0
Identities = 1631/1732 (94%), Gaps = 33/1732 (2%)
Strand=Plus/Plus
Query 2 AAAA-AGAGAAGTAGCGAGAATGAGCAGCACCAGTCAGAAGAGGAAGAAGATACAGAAGA 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 AAAAGAGAGAAGTAGCGAGAATGAGCAGCACCAGTCAGAAGAGGAAGAAGATACAGAAGA 67
Query 61 AATTCAAAAACAGAGGCTACAACCTCAAATTCGATGCCTTAGACGAGATTCTCGTTTTCG 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 AATTCAAAAACAGAGGGTACAACCTCAAATTCGATGCCTTAGACGAGATTCTCGTTTTCG 127
Query 121 CCGATGAATTTCCCGACGACGCTGACGGAGAAGCTATCGATCTTCTCCTCGATAACCTCC 180
||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 128 CCGATCAATTTCCCGACGACGATGACGGAGAAGCTATAGATCTTCTCCTCGATAACCTCC 187
Query 181 AAGAATCTCATAAATCTTCCACTGTCGACGCGGAATCAGTTCGAGGATTGATAAACCAG- 239
| ||| | |||||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 188 AGGAAACGCATAAATCATCCACTGTCGACGCGGAATCAGTTCGAGGATTGATAAATC-GC 246
Query 240 TTGTTGGGAGCTCATAACGCGCCGGAAGAACCTACAACATCTGCTTCTTCCTTGGCCG-T 298
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| || |
Sbjct 247 TTGTTAGGAGCTCATAACGCCCCGGAGGAACCTACAACATCTGCTTCTTCCTTGG-CGAT 305
Query 299 CATCGACGCCTTTCTGATTCCAAAGTTTGGATATGATTCCGTTaaaaaaaaGTTCAATGA 358
||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 306 CATCGACGCGTTTCTGGTGCCAAAGTTTGGATATGATTCTGTTAAAAAAAAGTTCAACGA 365
Query 359 GTATACGAGTAGCCTGCCTATTCATGGTGAGGCTTCTGCAAAAACAGCATTATACAGGGA 418
| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 366 GCATACGAGTAGCTTGCCTATTCACGGTGAGGCTTCTGCAAAAACAGCTTTATACAGGGA 425
Query 419 GCGATTCATGTTGCTGTCGCAGAGAGTTTCTCGCGCAGAGCATTTTTCTAGGCCAGCATT 478
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 426 ACGATTCATGTTGTTGTCGCAGAGAGTTTCTCGTGCAGAGCATTTTTCTAGGCCAGCATT 485
Query 479 TGATGCTGAAATGTCGCAGTTTGAGAACAATGAGATATCTTCAATCCAGTCTCTAATTTC 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 486 TGATGCTGAAATGTCGCAGTTTGAGAACAATGAGATATCTTCAATCCAGTCTCTGATTTC 545
Query 539 TCAAAGGGGAAGGAAATGGGTGATGGGAGTTATATCACAGTTAGAAGATGGACATTTCTA 598
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 546 TCAAAGGGGAAGGAAATGGGTGATGGGAGTGATATCACAGTTGGAAGATGGACATTTCTA 605
Query 599 CCTGGAGGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAAAGATAACAACAGG 658
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CCTGGAAGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAAAGATAACAACAGG 665
Query 659 ATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGTGAAATGCAGGTGAACGGTATCTT 718
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 666 ATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGCGAAATGCAGGTTAACGGTATCTT 725
Query 719 TCAGGTGATTACATGCGGATTTCCTCCTTTAGAAGACAGGGACAAAACTCTAAAGGCACA 778
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 726 TCAGGTGATTACATGTGGATTTCCTCCCTTAGAAGACAGGGACAAAACACTAAAGGCGCA 785
Query 779 TTCTGAATACGACTTCTTTGGAGGCGGCACACAAACTAAAGAAGAGACGATTAGACTTGC 838
||||||||| || ||||| ||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 786 TTCTGAATATGATTTCTTCGGAGGCGGCACACTAACTAAAGAAGAGATGATTAAACTTGC 845
Query 839 AGACCTCGAAAGACAAGCGGTGAGTGACACATTTGTCATATTGTCTGATATATGGTTGGA 898
|||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 846 AGACCTTGAAAGACAAGCGGTGAATGACACATTTGTCATATTGTCTGACATATGGTTGGA 905
Query 899 CGACGAAGAGGTTATCAGGAAGCTGGAAACTGTTCTTGACGGTTTTGAAAGTGTGGAGAC 958
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 CGACGAAGAGGTTATGAGGAAGCTGGAAACTGTTCTTGACGGTTTTGAAAGTGTGGAGAC 965
Query 959 AGTACCGTCCTTGTTTGTTTTTATGGGAAACTTTTGTTCTCGCCCATGCAACTTATCCTT 1018
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 966 AGTACCCTCCTTGTTTGTTTTTATGGGAAATTTTTGTTCTCGCCCATGCAACTTATCCTT 1025
Query 1019 TGTTTCGTACTCAAGCCTTAGGGAGCAGTTTGGTAAACTTGGGAGAATGATTGGAAATCA 1078
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1026 TGGTTCGTATTCAAGCCTTAGGGAGCAGTTTGGTAAACTTGGGAGAATGATTGGAAACCA 1085
Query 1079 TCCACGGCTAAAAGAAAATAGTCGGTTTTTATTCATTCCAGGTCCTGGGGACGCAGGTCC 1138
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1086 TCCACGGCTTAAAGAAAATAGTCGGTTTTTATTCATTCCAGGTCCTGAGGACGCAGGTCC 1145
Query 1139 CTCAACAGTCTTACCAAGATGCGCTTTACCGAACTATTTAACTGAAGAGCTTCGAAACAT 1198
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1146 CTCAACAGTCTTGCCAAGATGCGCTTTACCGAAATATTTAACCGAAGAGCTTCGAAACAT 1205
Query 1199 TATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCAAGAGAT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCAAGAGAT 1265
Query 1259 TGTGTTCTTTCGACAAGATCTTCTGTATCGGATGCGTCGTTCATGCTTAGTAACCCCTTC 1318
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TGTGTTCTTCCGACAAGATCTTCTGTATCGGATGCGTCGTTCATGCTTAGTAACCCCTTC 1325
Query 1319 CACAGAAGAAACCAAGGACCCTTTTAAGCATCTTGTCTACACAATAACACATCAGAGCCA 1378
| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1326 CTCAGAAGAAACGAATGACCCTTTTAAGCATCTTGTCTACACAATAACTCATCAGAGCCA 1385
Query 1379 TCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACTCTCTTCG 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1386 TCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACGCTCTTCG 1445
Query 1439 ACTGTACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGATGTGTGCAA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1446 ACTGTACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGAGGTTTGCAA 1505
Query 1499 ATTTGGGGGAACAACATGTTTCAATCCAGGCTCCTTT-TCAACTGATAGCACCTTCGTAG 1557
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 1506 ATTTGGGGGAACAACATGTTTCAATCCAGGCTC-TTTCTCAACTGATAGCACATTCGTAG 1564
Query 1558 CTTATCGACCGTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGATTCT------A----- 1606
|||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1565 CTTATCGACCTTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGATTCTCCTTTTAAAATT 1624
Query 1607 -------G-A--TCAATTGAGTGCCATTTTTACCATACAAGCCTGAGCTTAAAAGGTATA 1656
| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1625 CATCCCAGGAGATCAATTGAGTGCCATTTTTACCAGACAAGCCTGAGCTTAAAAGGTATA 1684
Query 1657 AAGAAAGAGTGaaaaaaaCATATACTTCATTCCCTATTCTTTGCTTCT-TGT 1707
||||||||||||||||| || |||||| ||| ||||||||||||| |||
Sbjct 1685 CAGAAAGAGTGAAAAAAA--TA--CTTCATGCCCCATTCTTTGCTTCTCTGT 1732
> AT2G31625.1 | Symbols: | unknown pseudogene | chr2:13453331-13455235
REVERSE LENGTH=1001
Length=1001
Score = 741 bits (401), Expect = 0.0
Identities = 812/1000 (81%), Gaps = 69/1000 (7%)
Strand=Plus/Plus
Query 641 AGCA-AAGATAACAACAGGATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGTGAAA 699
|||| || ||||| ||||| || |||||||||||||||||| |||||||| |||||||||
Sbjct 32 AGCATAATATAACCACAGGGTTTTTCACAGAGAATACTATAGTTTTGGCACAAGGTGAAA 91
Query 700 TGCAGGTGAACGGTATCTTTCAGGTGATTACATGCGGATTTCCTCCTTTAGAAGACAGGG 759
|||| | ||||||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 92 TGCA--T-AACGGTATCTTTCAGGTGATTGCATGCGGATTCCCTCCTTTAGAAAACAGGG 148
Query 760 ACAAAACTCTAAAGGCACATTCTGAATACGACTTCTTT-GGAGGCGGCACACAAACTAAA 818
| | |||| |||||||||| ||||||| ||| ||| | ||| | | ||| |||
Sbjct 149 -----A-T-AAAAGATACATTCTGAAAACGACTT-TTTCGGATGTGGCTCGCCAACAAAA 200
Query 819 GAAGAGACGATTAGACTTGCAGACCTCGAAAGACAAGCGGTGAGTGACACATTTGTCATA 878
|| |||| |||||||||||||||| | |||| ||||| ||||| ||||| |||||||||
Sbjct 201 GACGAGATGATTAGACTTGCAGACTTGGAAAAACAAGTGGTGAACGACACCTTTGTCATA 260
Query 879 TTGTCTGATATATGGTTGGACGACGAAGAGGTTATCAGGAAGCTGGAAACTGTTCTTGAC 938
|||||||| |||||| |||| | ||||||||| | ||||||||||||| ||| ||||
Sbjct 261 TTGTCTGACATATGGCTGGATGGTGAAGAGGTTCTTGGGAAGCTGGAAAC-GTTATTGAT 319
Query 939 GGTTTTGAAAGTGTGGAGACAGTACCGTCCTTGTTTGTTTTTATGGGAAACTTTTGTTCT 998
|||||||||| ||| ||| ||| || || ||||||||||| ||||||||||||||||||
Sbjct 320 GGTTTTGAAAATGTAAAGATAGTGCCCTCTTTGTTTGTTTTCATGGGAAACTTTTGTTCT 379
Query 999 CGCCCATGCAACTTATCCTTTGTTTCGTACTCAAGCCTTAGGGAGCAGTTTGGTAAACTT 1058
||||||||||||||||| |||| || || |||||| || || ||||||||| |||||||
Sbjct 380 CGCCCATGCAACTTATCTTTTGGCTCTTATTCAAGCATTTGGCAGCAGTTTGATAAACTT 439
Query 1059 GGGAGAATGATTGGAAATCATCCACGGCTAAAAG-AAA-AT-AGTCG-GTTTT-TATTCA 1113
|| |||||||||||||||||||||||||||| || ||| || | | | | || |
Sbjct 440 GGAAGAATGATTGGAAATCATCCACGGCTAATAGCAAACATGAA-CATGACTAATAAAAA 498
Query 1114 TTCCAGG-TCCTGGGGACGCAGGTCCCTCAACAGTCTTACCAAGATGCGCTTTACC-GAA 1171
|| | || || | || ||||| ||| |||||||| |||||||||| |||||| ||
Sbjct 499 CTC-ATTATC-TGTG-AC--AGGTCTCTCGACAGTCTTGCCAAGATGCGGTTTACCAGAG 553
Query 1172 CTATTTAACTGAAGAGCTTCGAAACATTATTCCCAATGCAA-TATTT-TCAAGCAATCCT 1229
|||||||| |||||||||||| | ||||| ||||| | ||||| | || |||
Sbjct 554 -TATTTAACCGAAGAGCTTCGAGATGTTATTACCAAT-CTTGTATTTGT-AA--AAT--- 605
Query 1230 TGCAGAGTAAAGTTCTATAACCAAG-AGATTGTGTTCTTTCGACAAGATCTTCTGTATCG 1288
|||||||||||||||| ||| ||| ||||||||||||| ||||| || ||||| || |
Sbjct 606 -GCAGAGTAAAGTTCTACAAC-AAGGAGATTGTGTTCTTCCGACACGAGCTTCTATA-CA 662
Query 1289 GA-TGCGTCGTTCATGCTTAGTAACCCCTTCCACAGAAGAAACCAAGGACCC-TTTTA-- 1344
|| || | |||||||||||| ||||||||||| | ||||||| || ||||| |||||
Sbjct 663 GAATGAGCCGTTCATGCTTAATAACCCCTTCCTGAAAAGAAACTAATGACCCATTTTATT 722
Query 1345 ----AGC-----AT----C--TTGTCTACACAATAACACATCAGAGCCATCTATGTCCTC 1389
| | || | |||||| |||| ||| |||||||||||||||||| ||
Sbjct 723 TTCCAACTTCTGATTTTACACTTGTCTCCACATTAATTCATCAGAGCCATCTATGTTATC 782
Query 1390 TACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACT--C---T-C-TTCGACTG 1442
|| ||||| |||| |||| ||||||||||||||| || |||| | | | |||||||
Sbjct 783 TAACTCTCTTGGTTCAACACATCATTTGGAACTATGACCACTGTCCACTGCCTTCGACTA 842
Query 1443 TACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGATGTGTGCAAATTT 1502
|| |||||||| || |||||| ||||||||||||||||||||||| | || |||||||||
Sbjct 843 TATCCAACTCCACACACGATATTATTAGGTGACAAGAGTGAGCAAAACGTATGCAAATTT 902
Query 1503 GGGGGA-ACAACATGTTTCAATCCAGGCTCCTTTTCAACTGATAGCACCTTCGTAGCTTA 1561
|||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GGGGGAGA-AATATGTTTCAATCCAGGCTCCTTTTCAACTGATAGCACCTTCGTAGCTTA 961
Query 1562 TCGACCGTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGA 1601
|||||| ||||||||||||||||||||||||||| |||||
Sbjct 962 TCGACCTTCCACTCAAGAAGTCGAACTCTCTGCTCTGTGA 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87248547210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5