BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489063 Length=1764 Score E Sequences producing significant alignments: (Bits) Value AT5G22110.1 | Symbols: ATDPB2, CYL2, DPB2 | DNA polymerase epsi... 2608 0.0 AT2G31625.1 | Symbols: | unknown pseudogene | chr2:13453331-13... 741 0.0 > AT5G22110.1 | Symbols: ATDPB2, CYL2, DPB2 | DNA polymerase epsilon subunit B2 | chr5:7330825-7334205 REVERSE LENGTH=1854 Length=1854 Score = 2608 bits (1412), Expect = 0.0 Identities = 1631/1732 (94%), Gaps = 33/1732 (2%) Strand=Plus/Plus Query 2 AAAA-AGAGAAGTAGCGAGAATGAGCAGCACCAGTCAGAAGAGGAAGAAGATACAGAAGA 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8 AAAAGAGAGAAGTAGCGAGAATGAGCAGCACCAGTCAGAAGAGGAAGAAGATACAGAAGA 67 Query 61 AATTCAAAAACAGAGGCTACAACCTCAAATTCGATGCCTTAGACGAGATTCTCGTTTTCG 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 68 AATTCAAAAACAGAGGGTACAACCTCAAATTCGATGCCTTAGACGAGATTCTCGTTTTCG 127 Query 121 CCGATGAATTTCCCGACGACGCTGACGGAGAAGCTATCGATCTTCTCCTCGATAACCTCC 180 ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 128 CCGATCAATTTCCCGACGACGATGACGGAGAAGCTATAGATCTTCTCCTCGATAACCTCC 187 Query 181 AAGAATCTCATAAATCTTCCACTGTCGACGCGGAATCAGTTCGAGGATTGATAAACCAG- 239 | ||| | |||||||| |||||||||||||||||||||||||||||||||||||| | | Sbjct 188 AGGAAACGCATAAATCATCCACTGTCGACGCGGAATCAGTTCGAGGATTGATAAATC-GC 246 Query 240 TTGTTGGGAGCTCATAACGCGCCGGAAGAACCTACAACATCTGCTTCTTCCTTGGCCG-T 298 ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| || | Sbjct 247 TTGTTAGGAGCTCATAACGCCCCGGAGGAACCTACAACATCTGCTTCTTCCTTGG-CGAT 305 Query 299 CATCGACGCCTTTCTGATTCCAAAGTTTGGATATGATTCCGTTaaaaaaaaGTTCAATGA 358 ||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||| || Sbjct 306 CATCGACGCGTTTCTGGTGCCAAAGTTTGGATATGATTCTGTTAAAAAAAAGTTCAACGA 365 Query 359 GTATACGAGTAGCCTGCCTATTCATGGTGAGGCTTCTGCAAAAACAGCATTATACAGGGA 418 | ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 366 GCATACGAGTAGCTTGCCTATTCACGGTGAGGCTTCTGCAAAAACAGCTTTATACAGGGA 425 Query 419 GCGATTCATGTTGCTGTCGCAGAGAGTTTCTCGCGCAGAGCATTTTTCTAGGCCAGCATT 478 |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 426 ACGATTCATGTTGTTGTCGCAGAGAGTTTCTCGTGCAGAGCATTTTTCTAGGCCAGCATT 485 Query 479 TGATGCTGAAATGTCGCAGTTTGAGAACAATGAGATATCTTCAATCCAGTCTCTAATTTC 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 486 TGATGCTGAAATGTCGCAGTTTGAGAACAATGAGATATCTTCAATCCAGTCTCTGATTTC 545 Query 539 TCAAAGGGGAAGGAAATGGGTGATGGGAGTTATATCACAGTTAGAAGATGGACATTTCTA 598 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 546 TCAAAGGGGAAGGAAATGGGTGATGGGAGTGATATCACAGTTGGAAGATGGACATTTCTA 605 Query 599 CCTGGAGGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAAAGATAACAACAGG 658 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 606 CCTGGAAGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAAAGATAACAACAGG 665 Query 659 ATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGTGAAATGCAGGTGAACGGTATCTT 718 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 666 ATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGCGAAATGCAGGTTAACGGTATCTT 725 Query 719 TCAGGTGATTACATGCGGATTTCCTCCTTTAGAAGACAGGGACAAAACTCTAAAGGCACA 778 ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| || Sbjct 726 TCAGGTGATTACATGTGGATTTCCTCCCTTAGAAGACAGGGACAAAACACTAAAGGCGCA 785 Query 779 TTCTGAATACGACTTCTTTGGAGGCGGCACACAAACTAAAGAAGAGACGATTAGACTTGC 838 ||||||||| || ||||| ||||||||||||| |||||||||||||| ||||| |||||| Sbjct 786 TTCTGAATATGATTTCTTCGGAGGCGGCACACTAACTAAAGAAGAGATGATTAAACTTGC 845 Query 839 AGACCTCGAAAGACAAGCGGTGAGTGACACATTTGTCATATTGTCTGATATATGGTTGGA 898 |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 846 AGACCTTGAAAGACAAGCGGTGAATGACACATTTGTCATATTGTCTGACATATGGTTGGA 905 Query 899 CGACGAAGAGGTTATCAGGAAGCTGGAAACTGTTCTTGACGGTTTTGAAAGTGTGGAGAC 958 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 906 CGACGAAGAGGTTATGAGGAAGCTGGAAACTGTTCTTGACGGTTTTGAAAGTGTGGAGAC 965 Query 959 AGTACCGTCCTTGTTTGTTTTTATGGGAAACTTTTGTTCTCGCCCATGCAACTTATCCTT 1018 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 966 AGTACCCTCCTTGTTTGTTTTTATGGGAAATTTTTGTTCTCGCCCATGCAACTTATCCTT 1025 Query 1019 TGTTTCGTACTCAAGCCTTAGGGAGCAGTTTGGTAAACTTGGGAGAATGATTGGAAATCA 1078 || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1026 TGGTTCGTATTCAAGCCTTAGGGAGCAGTTTGGTAAACTTGGGAGAATGATTGGAAACCA 1085 Query 1079 TCCACGGCTAAAAGAAAATAGTCGGTTTTTATTCATTCCAGGTCCTGGGGACGCAGGTCC 1138 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1086 TCCACGGCTTAAAGAAAATAGTCGGTTTTTATTCATTCCAGGTCCTGAGGACGCAGGTCC 1145 Query 1139 CTCAACAGTCTTACCAAGATGCGCTTTACCGAACTATTTAACTGAAGAGCTTCGAAACAT 1198 |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1146 CTCAACAGTCTTGCCAAGATGCGCTTTACCGAAATATTTAACCGAAGAGCTTCGAAACAT 1205 Query 1199 TATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCAAGAGAT 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1206 TATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCAAGAGAT 1265 Query 1259 TGTGTTCTTTCGACAAGATCTTCTGTATCGGATGCGTCGTTCATGCTTAGTAACCCCTTC 1318 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1266 TGTGTTCTTCCGACAAGATCTTCTGTATCGGATGCGTCGTTCATGCTTAGTAACCCCTTC 1325 Query 1319 CACAGAAGAAACCAAGGACCCTTTTAAGCATCTTGTCTACACAATAACACATCAGAGCCA 1378 | |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1326 CTCAGAAGAAACGAATGACCCTTTTAAGCATCTTGTCTACACAATAACTCATCAGAGCCA 1385 Query 1379 TCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACTCTCTTCG 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1386 TCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACGCTCTTCG 1445 Query 1439 ACTGTACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGATGTGTGCAA 1498 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1446 ACTGTACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGAGGTTTGCAA 1505 Query 1499 ATTTGGGGGAACAACATGTTTCAATCCAGGCTCCTTT-TCAACTGATAGCACCTTCGTAG 1557 ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| Sbjct 1506 ATTTGGGGGAACAACATGTTTCAATCCAGGCTC-TTTCTCAACTGATAGCACATTCGTAG 1564 Query 1558 CTTATCGACCGTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGATTCT------A----- 1606 |||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 1565 CTTATCGACCTTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGATTCTCCTTTTAAAATT 1624 Query 1607 -------G-A--TCAATTGAGTGCCATTTTTACCATACAAGCCTGAGCTTAAAAGGTATA 1656 | | ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1625 CATCCCAGGAGATCAATTGAGTGCCATTTTTACCAGACAAGCCTGAGCTTAAAAGGTATA 1684 Query 1657 AAGAAAGAGTGaaaaaaaCATATACTTCATTCCCTATTCTTTGCTTCT-TGT 1707 ||||||||||||||||| || |||||| ||| ||||||||||||| ||| Sbjct 1685 CAGAAAGAGTGAAAAAAA--TA--CTTCATGCCCCATTCTTTGCTTCTCTGT 1732 > AT2G31625.1 | Symbols: | unknown pseudogene | chr2:13453331-13455235 REVERSE LENGTH=1001 Length=1001 Score = 741 bits (401), Expect = 0.0 Identities = 812/1000 (81%), Gaps = 69/1000 (7%) Strand=Plus/Plus Query 641 AGCA-AAGATAACAACAGGATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGTGAAA 699 |||| || ||||| ||||| || |||||||||||||||||| |||||||| ||||||||| Sbjct 32 AGCATAATATAACCACAGGGTTTTTCACAGAGAATACTATAGTTTTGGCACAAGGTGAAA 91 Query 700 TGCAGGTGAACGGTATCTTTCAGGTGATTACATGCGGATTTCCTCCTTTAGAAGACAGGG 759 |||| | ||||||||||||||||||||| |||||||||| |||||||||||| |||||| Sbjct 92 TGCA--T-AACGGTATCTTTCAGGTGATTGCATGCGGATTCCCTCCTTTAGAAAACAGGG 148 Query 760 ACAAAACTCTAAAGGCACATTCTGAATACGACTTCTTT-GGAGGCGGCACACAAACTAAA 818 | | |||| |||||||||| ||||||| ||| ||| | ||| | | ||| ||| Sbjct 149 -----A-T-AAAAGATACATTCTGAAAACGACTT-TTTCGGATGTGGCTCGCCAACAAAA 200 Query 819 GAAGAGACGATTAGACTTGCAGACCTCGAAAGACAAGCGGTGAGTGACACATTTGTCATA 878 || |||| |||||||||||||||| | |||| ||||| ||||| ||||| ||||||||| Sbjct 201 GACGAGATGATTAGACTTGCAGACTTGGAAAAACAAGTGGTGAACGACACCTTTGTCATA 260 Query 879 TTGTCTGATATATGGTTGGACGACGAAGAGGTTATCAGGAAGCTGGAAACTGTTCTTGAC 938 |||||||| |||||| |||| | ||||||||| | ||||||||||||| ||| |||| Sbjct 261 TTGTCTGACATATGGCTGGATGGTGAAGAGGTTCTTGGGAAGCTGGAAAC-GTTATTGAT 319 Query 939 GGTTTTGAAAGTGTGGAGACAGTACCGTCCTTGTTTGTTTTTATGGGAAACTTTTGTTCT 998 |||||||||| ||| ||| ||| || || ||||||||||| |||||||||||||||||| Sbjct 320 GGTTTTGAAAATGTAAAGATAGTGCCCTCTTTGTTTGTTTTCATGGGAAACTTTTGTTCT 379 Query 999 CGCCCATGCAACTTATCCTTTGTTTCGTACTCAAGCCTTAGGGAGCAGTTTGGTAAACTT 1058 ||||||||||||||||| |||| || || |||||| || || ||||||||| ||||||| Sbjct 380 CGCCCATGCAACTTATCTTTTGGCTCTTATTCAAGCATTTGGCAGCAGTTTGATAAACTT 439 Query 1059 GGGAGAATGATTGGAAATCATCCACGGCTAAAAG-AAA-AT-AGTCG-GTTTT-TATTCA 1113 || |||||||||||||||||||||||||||| || ||| || | | | | || | Sbjct 440 GGAAGAATGATTGGAAATCATCCACGGCTAATAGCAAACATGAA-CATGACTAATAAAAA 498 Query 1114 TTCCAGG-TCCTGGGGACGCAGGTCCCTCAACAGTCTTACCAAGATGCGCTTTACC-GAA 1171 || | || || | || ||||| ||| |||||||| |||||||||| |||||| || Sbjct 499 CTC-ATTATC-TGTG-AC--AGGTCTCTCGACAGTCTTGCCAAGATGCGGTTTACCAGAG 553 Query 1172 CTATTTAACTGAAGAGCTTCGAAACATTATTCCCAATGCAA-TATTT-TCAAGCAATCCT 1229 |||||||| |||||||||||| | ||||| ||||| | ||||| | || ||| Sbjct 554 -TATTTAACCGAAGAGCTTCGAGATGTTATTACCAAT-CTTGTATTTGT-AA--AAT--- 605 Query 1230 TGCAGAGTAAAGTTCTATAACCAAG-AGATTGTGTTCTTTCGACAAGATCTTCTGTATCG 1288 |||||||||||||||| ||| ||| ||||||||||||| ||||| || ||||| || | Sbjct 606 -GCAGAGTAAAGTTCTACAAC-AAGGAGATTGTGTTCTTCCGACACGAGCTTCTATA-CA 662 Query 1289 GA-TGCGTCGTTCATGCTTAGTAACCCCTTCCACAGAAGAAACCAAGGACCC-TTTTA-- 1344 || || | |||||||||||| ||||||||||| | ||||||| || ||||| ||||| Sbjct 663 GAATGAGCCGTTCATGCTTAATAACCCCTTCCTGAAAAGAAACTAATGACCCATTTTATT 722 Query 1345 ----AGC-----AT----C--TTGTCTACACAATAACACATCAGAGCCATCTATGTCCTC 1389 | | || | |||||| |||| ||| |||||||||||||||||| || Sbjct 723 TTCCAACTTCTGATTTTACACTTGTCTCCACATTAATTCATCAGAGCCATCTATGTTATC 782 Query 1390 TACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACT--C---T-C-TTCGACTG 1442 || ||||| |||| |||| ||||||||||||||| || |||| | | | ||||||| Sbjct 783 TAACTCTCTTGGTTCAACACATCATTTGGAACTATGACCACTGTCCACTGCCTTCGACTA 842 Query 1443 TACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGATGTGTGCAAATTT 1502 || |||||||| || |||||| ||||||||||||||||||||||| | || ||||||||| Sbjct 843 TATCCAACTCCACACACGATATTATTAGGTGACAAGAGTGAGCAAAACGTATGCAAATTT 902 Query 1503 GGGGGA-ACAACATGTTTCAATCCAGGCTCCTTTTCAACTGATAGCACCTTCGTAGCTTA 1561 |||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 GGGGGAGA-AATATGTTTCAATCCAGGCTCCTTTTCAACTGATAGCACCTTCGTAGCTTA 961 Query 1562 TCGACCGTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGA 1601 |||||| ||||||||||||||||||||||||||| ||||| Sbjct 962 TCGACCTTCCACTCAAGAAGTCGAACTCTCTGCTCTGTGA 1001 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87248547210 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5