BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489069
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22200.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 830 0.0
> AT5G22200.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr5:7355688-7356871
FORWARD LENGTH=633
Length=633
Score = 830 bits (449), Expect = 0.0
Identities = 574/633 (91%), Gaps = 13/633 (2%)
Strand=Plus/Plus
Query 1 ATGACGGGGAGAGACTGCAACCAACACTACGACTATGAGGAGAGGAGGATGA-GACG--C 57
|||||||||||| ||||| |||||||| ||| |||||||||||||||||||| || |
Sbjct 1 ATGACGGGGAGATACTGCGACCAACACAACGGCTATGAGGAGAGGAGGATGAGGATGATG 60
Query 58 AT---A-GTAT-g-ggggggATTG-CTTGGCCTAATCGTGGCGGGTGCGTTCGTGGTGTT 110
|| | | || | ||| | || ||||||||||||||||||| |||||||||||||||
Sbjct 61 ATGAGACGCATAGCATGGGCA-TGTCTTGGCCTAATCGTGGCGGTTGCGTTCGTGGTGTT 119
Query 111 CTTGGTGTGGGTTATACTTCACCCGCACGGACCGCGTTTTGTCCTCCAAGACGTAACCAT 170
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTGGTGTGGGCTATACTTCACCCGCACGGACCGCGTTTTGTCCTCCAAGACGTAACCAT 179
Query 171 TAACGACTTCAACATATCTCAGCCAAATTTCCTCTCTTCAAATCTTCAGGTCACTCTCTC 230
||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 180 TAACGACTTCAACGTTTCTCAGCCAAATTTCCTCTCTTCAAATCTCCAGGTCACTGTATC 239
Query 231 TTCTCGCAACCCAAACGACAAGATCGGAATTTTCTATGACCGTCTCGACATCTATGCCAC 290
||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| | |||
Sbjct 240 TTCTCGCAATCCAAACGACAAGATCGGCATTTTTTATGATCGTCTCGACATCTACGTCAC 299
Query 291 ATACAGAAACCAAGAGGTGACGGTGGCGAGGCTATTGCCGTCGACGTATCAAGGACATCT 350
|||| | ||||||||||| ||| |||||||||| |||||||| |||||||||||||||||
Sbjct 300 ATACCGGAACCAAGAGGTAACGTTGGCGAGGCTCTTGCCGTCAACGTATCAAGGACATCT 359
Query 351 GGAAGCGACGGTGTGGTCACCGTTTCTGATTGGCTCCAACGTGCCGGTGGCTCCTTACCT 410
||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 360 GGAAGTAACGGTGTGGTCACCATTTCTGATTGGCTCCGCCGTGCCGGTGGCTCCTTACCT 419
Query 411 GTCTCCGGCGTTGAACGAAGATTTAATCGCCGGGATGGTGCTTCTCAACATCAAGATAGA 470
||| |||| ||||||||||| ||| |||||||| ||||||||||||||||||| |||||
Sbjct 420 ATCTTCGGCATTGAACGAAGACTTATTCGCCGGGTTGGTGCTTCTCAACATCAAAATAGA 479
Query 471 CGGTTGGGTTAGGTGGAAAGTGGGCTCGTGGGTCTCTGGCGGTTATCACCTCCACGTTAA 530
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 480 CGGTTGGGTTAGGTGGAAAGTGGGCTCGTGGGTCTCTGGCAGTTATCGCCTCCACGTTAA 539
Query 531 CTGTCCGGCGTTCATTACCGTCACCGGAAAGTTAGTCGG-AGCCGGTCCGGCGATCAAGT 589
|||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 540 CTGTCCTGCGTTCATTACCGTCACCGGAAAGTTAACCGGCA-CCGGTCCGGCGATCAAGT 598
Query 590 ACCAGCTTGTTCAGCGATGTGCTGTTGACGTAT 622
|||||||||||||||||||||||||||||||||
Sbjct 599 ACCAGCTTGTTCAGCGATGTGCTGTTGACGTAT 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5