BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489071

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   407    5e-113


> AT5G22210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; Has 30201 
Blast hits to 17322 proteins in 780 species: Archae - 12; 
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 
| chr5:7358820-7359952 FORWARD LENGTH=468
Length=468

 Score =  407 bits (220),  Expect = 5e-113
 Identities = 282/309 (91%), Gaps = 15/309 (5%)
 Strand=Plus/Plus

Query  1    TTCAACTCACTTTCGGTTTCTGATGTTTTGTCTCCCTGATTGAAAGAGATGGGGTTTTCC  60
            ||| |||||||||||||||||||||||||||||| |||||||  | | |           
Sbjct  17   TTCGACTCACTTTCGGTTTCTGATGTTTTGTCTCTCTGATTG--A-A-A-----------  61

Query  61   AAGATGGGAAACAAAGCTACAACGGTGAAAGAAGAACGGGAAGAGATCCACTTGAAGATT  120
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  62   AAGATGGGAAACAAAGCTACAACGGTGAAAGAAGAACGCGAAGAGATCCATTTGAAGATT  121

Query  121  GTACCTCCATTGGACAAAGTTTTTCTACGTTGGCTCGCGAGAGATCTACAAAGATTTCAT  180
            |||||||||||||||||||||||||| ||||||||||| |||||||| || ||| |||||
Sbjct  122  GTACCTCCATTGGACAAAGTTTTTCTGCGTTGGCTCGCAAGAGATCTCCAGAGAGTTCAT  181

Query  181  GGATTCAAACCGAAGAACAACACTCGTGCGATCACTCCTCCAGATAGCTACATCGAGTTT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  GGATTCAAACCGAAGAACAACACTCGTGCGATCACTCCTCCAGATAGCTACATCGAGTTT  241

Query  241  ATGCGGTTAAATGGATCGCTTGATGTGGATTTAGATGACCCTGAACTTGCCCATCTGTTC  300
            |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct  242  ATGCGGTTAAATGGATCGCTTGATGTAGATTTAGATGACCCTGATCTTGCCCATTTGTTC  301

Query  301  AAGTAAAAA  309
            |||||||||
Sbjct  302  AAGTAAAAA  310



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5