BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489072
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription f... 2555 0.0
> AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription
factor 1 | chr5:7360535-7364454 FORWARD LENGTH=1958
Length=1958
Score = 2555 bits (1383), Expect = 0.0
Identities = 1664/1792 (93%), Gaps = 50/1792 (3%)
Strand=Plus/Plus
Query 1 cttcttcttcttcttcttctctCCCGCtttttttCGATTCGCCGATCTCTTCACATTCTC 60
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 CTTCTTCATCTTCTTCTCCTCTCCCGCTTTTTTTCGATTCGCCGATCTCTTCACATTCTC 72
Query 61 TCCCCGGAATCTCCGTAATTCTCGCCGTAGATCTGCTTCCTAATCCCTATTAGGATCTCT 120
| ||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||
Sbjct 73 TTCCCGGAATCTCCGTAATTCCCGCCGTAGATCTGCTTCTTAATCGTTATTGGGATCTCT 132
Query 121 GCTTACCGGAGATCCGAATTCCCG-GACAATTTCCGCCGTTTCtttttttttttGGGGGA 179
||||||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||
Sbjct 133 GCTTACCGGAGATCCGAGTTTCCGTGACAATTTTCGCCGTTTCTTTTTTTTTTTGGGGGA 192
Query 180 -TTTTTATCGAGATTCGTTCTCATGTCTGAAG-A--ACCTCCACAATTTCCACCTTCTAA 235
|||||||||||||||||||| |||||||||| | ||||| |||||| ||| |||||||
Sbjct 193 TTTTTTATCGAGATTCGTTCTTATGTCTGAAGAAGTACCTCAACAATTCCCATCTTCTAA 252
Query 236 GCGGCAGCTTCATCCTTCTCTGTCTTCTATGAAACCTCCGT-TAGTTGCTCCCGGCGAGT 294
||||||||||||||||||||| ||||||||||| ||||| | |||||||||| || ||||
Sbjct 253 GCGGCAGCTTCATCCTTCTCTTTCTTCTATGAAGCCTCC-TCTAGTTGCTCCTGGTGAGT 311
Query 295 ATCACCGGTTTGATGCGGCGG-GA--------GGTGGAGC---TGCTGATCAGGTTGTCG 342
||||||||||||||||||||| || |||||||| ||||||||||| | | |
Sbjct 312 ATCACCGGTTTGATGCGGCGGAGACTCGCGGTGGTGGAGCTGTTGCTGATCAGG-T-T-G 368
Query 343 TCTCTGATGCGATTGTTATTAAATCTACTCTGAAGCGTAAGACAGATTCAGTTAACGAGA 402
||||||| |||||||| || |||||||||||||||||||||||||||| || ||| | |
Sbjct 369 TCTCTGACGCGATTGTGATCAAATCTACTCTGAAGCGTAAGACAGATTTGGTAAACCAAA 428
Query 403 TAGCGGAGCCCAATGAATTGAATACTGGTGTTCTTCAAACACCTGTATCAGGGAAAGGAG 462
||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 429 TAGTTGAGGTCAATGAATTGAATACCGGTGTTCTTCAAACACCTGTATCAGGGAAAGGGG 488
Query 463 GGAAGGCCAAGAAAACTTCTAGGTCAGTGAAGTCTAATAAGTCTGGAACGCAAGCTTCTG 522
|||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 489 GGAAAGCCAAGAAAACTTCTAGGTCTGCGAAGTCTAATAAGTCTGGAACGCTAGCTTCTG 548
Query 523 GTTCTAATGCAGGTTCTCCTGGAAATAACTTTGCACAGGCCGGGACTTGTCGATATGATA 582
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 549 GCTCTAATGCAGGTTCTCCTGGAAATAACTTTGCACAGGCCGGTACTTGTCGATATGATA 608
Query 583 GTTCGCTAGGTCTTTTGACAAAGAAATTTATCAATTTGATAAAACAAGCAGAGGATGGTA 642
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GTTCGTTAGGTCTTTTGACAAAGAAATTTATCAATTTGATAAAACAAGCAGAGGATGGTA 668
Query 643 TTCTTGATCTTAACAAAGCAGCTGATACTTTAGAGGTACAAAAGAGACGGATATATGATA 702
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 669 TTCTTGATCTAAACAAAGCAGCTGATACTTTAGAGGTACAAAAGAGAAGGATATATGATA 728
Query 703 TAACCAATGTGTTAGAAGGAATTGGTTTGATAGAGAAGACGCTCAAGAACAGAATTCAGT 762
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 729 TAACCAATGTGTTAGAAGGAATAGGTTTGATAGAGAAGACGCTTAAGAACAGGATTCAGT 788
Query 763 GGAAGGGTCTCGATGTCTCAAAACCAGGAGAAACAATCGAAAACATAGCTAACCTACAGG 822
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 789 GGAAGGGTCTCGATGTCTCAAAACCAGGAGAAACAATCGAAAGCATAGCTAACCTACAGG 848
Query 823 ATGAAGTACAAAACCTCACAGCTGAGGAGGCAAGATTAGATGACCAAATCAGAGAATCAC 882
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 ATGAAGTACAAAACCTCGCAGCTGAGGAGGCAAGATTAGATGACCAAATCAGAGAATCAC 908
Query 883 AAGAAAGATTAACAAGCTTGAGTGAGGATGAAAACAACAAAAGGTTATTGTTTGTCACTG 942
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 909 AAGAAAGATTAACAAGCTTGAGTGAGGATGAAAACAACAAAAGGTTACTGTTCGTCACTG 968
Query 943 AAAACGACATTAAGAACCTACCATGCTTCCAGAATAAGACGCTGATAGCTGTAAAGGCAC 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 AAAACGACATTAAGAACCTACCATGCTTCCAGAATAAGACGCTGATAGCTGTAAAGGCAC 1028
Query 1003 CGCATGGAACAACTCTTGAGGTGCCAGATCCTGATGAGGCTGGTGGTTATCAGAGGAGAT 1062
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1029 CGCATGGAACAACTCTTGAGGTTCCAGATCCTGATGAGGCTGGTGGTTATCAGAGGAGGT 1088
Query 1063 ACAGAATCATTCTGAGAAGCACAATGGGACCAATAGACGTGTACCTAGTCAGTCAATTCG 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 ACAGAATCATTCTGAGAAGCACAATGGGACCAATAGACGTGTACCTAGTCAGTCAATTCG 1148
Query 1123 AAGAGAGCTTTGAGGACATTCCTCACACTGATGAACCTTCATATGTTCCTGATGAACCTT 1182
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 1149 AAGAGAGCTTTGAGGACATTCCTCAGGCTGATGAACCTTCAAATGTTCCTGATGAACCCT 1208
Query 1183 C-AA--------A----CCTTC----C----ATCAACATCTGGTCTCCCTGAGAACCATG 1221
| || | ||||| | |||||||||||||||||||||||||||||
Sbjct 1209 CTAATGTCCCTGATGTACCTTCAAATCTTCCATCAACATCTGGTCTCCCTGAGAACCATG 1268
Query 1222 ATGTAGCAATGCCAATGGAAGAGGACAGCACCGAAAGGAACATGGAAACACAGGAACTTG 1281
||||| | ||||| ||| ||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 1269 ATGTATCTATGCCGATGAAAGAGGAAAGCACCGAAAGAAACATGGAAACACAGGAAGTTG 1328
Query 1282 ATGATACGCAAAGAGTTTACTCTGATATCGAATCTCATGACTTTGTCGATGGTATCATGA 1341
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1329 ATGATACGCAAAGAGTTTACTCTGACATCGAATCTCATGACTTTGTCGATGGTATCATGA 1388
Query 1342 AGATTGTTCCTCCAGATTTGGATCTGGGTGTAGATTACTGGTTTCGATCAGAGGTCGGCG 1401
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1389 AGATTGTTCCTCCAGATTTGGATATGGGTGTAGATTACTGGTTTCGATCAGAGGTAGGCG 1448
Query 1402 AAGTCAGCATCACAGACATGTGGCCAGATGAATCTGGACCGGACTGGAACCAGATGATTA 1461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1449 AAGTCAGCATCACAGACATGTGGCCAGATGAATCTGGACCAGACTGGAACCAGATGATTA 1508
Query 1462 CATTTGATCAAGACCACGCTGGACCGAGCGACA-CAGC--CTTGGAGCAGCCAAAAACTC 1518
||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 1509 CATTTGATCAAGACCACGCTGGACCGAGCGACAACAAAATCTTGGAGCAGCCACAAACTC 1568
Query 1519 CATCGAGCCCAACACCAGAAGATTCCACTGCTACGAGATCATCTACAGGTAGCTGAAGTT 1578
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1569 CATCGAGCCCAACACCAGAAGAATCCACTGCTACGAGATCACCTACAGGTAGCTGAAGTT 1628
Query 1579 AGCATACCACATTACAAGTACCACCATATATCTGTACATAGAGAATCTGATTTCGGTGAA 1638
| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 1629 ACCATACCACATTACAAGCACCACCATATATCTGTACATAGA-A-TCTGATTTCGGTGAA 1686
Query 1639 TCGAGAGTTCATGTTGTACTTGTACAGTAGCTGCATTGCGTTATCATAGGATAGAGATTG 1698
| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1687 ACCAGAGTTAATGTTGTACTTGTACAGTAGCTGCATTGCATTATCATAGAATAGAGATTG 1746
Query 1699 CAAAATAAAAGTAGAGAAACCAACCACCT-CGTTGTATTCTTCAtttttttt 1749
||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1747 CAAAATAAAAGTAGAGAAACCAACC-CCTTCGTTGTATTCTTCATTTTTTTT 1797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5