BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489075
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22250.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1386 0.0
AT3G44260.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 713 0.0
> AT5G22250.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:7365532-7366778 REVERSE
LENGTH=1247
Length=1247
Score = 1386 bits (750), Expect = 0.0
Identities = 1018/1134 (90%), Gaps = 71/1134 (6%)
Strand=Plus/Plus
Query 1 TTGTCGGCGTAATGTACTT-CGTTTAATACAACGACTTGAATTGCAATAATTGGATACA- 58
|||||||| |||||||||| | || ||||||||||||||||||||||||||| ||||||
Sbjct 63 TTGTCGGCTTAATGTACTTAC-TTAAATACAACGACTTGAATTGCAATAATTCGATACAC 121
Query 59 -AAGGAGAAGCCAACTTAGACCAATAGACCGAGTCAAGAAACACAGTGAATCA-AAACGT 116
||||||||||||||||||| | | | |||||||||||||| ||||||| ||||||
Sbjct 122 GAAGGAGAAGCCAACTTAGA-C--T--A---AGTCAAGAAACACATTGAATCATAAACGT 173
Query 117 GCGCGTTTCTCACA---CTTCT-C-CTCC-TCCTC-T---C-CT-TC---CTCGTA-ACA 160
|||||||||||||| ||||| | |||| ||||| | | || || ||| | ||
Sbjct 174 GCGCGTTTCTCACACTTCTTCTCCTCTCCTTCCTCGTAAACACTCTCTTACTCACATTCA 233
Query 161 TATATATAACTAAACCTTGCTGATTAACAAAATCATCACGaaaaaaaaaaaaCAGAGAC- 219
|||||||||||||||||||| ||||||| |||||| || |||||||||| ||||
Sbjct 234 TATATATAACTAAACCTTGCAGATTAACCAAATCA--AC----AAAAAAAAAC--AGACT 285
Query 220 TTT--T-AA-T-A-AA-GAAGAAGAAGACCTAAAAGATC-GG----G--AC-ATGATCAA 264
||| | || | | || |||||||||||||||||||||| || | || ||||||||
Sbjct 286 TTTGATAAATTCACAACGAAGAAGAAGACCTAAAAGATCGGGACTTGAAACTATGATCAA 345
Query 265 TTC-----C-GATGT-T--G--GT-ATCGTGATTCGTGACGTTTGGGCTGATAATCTCGA 312
|| | ||| | | | || |||||||||||||||||||||||| ||||||||||
Sbjct 346 ATCAGAAGCAGATCTCTCCGATGTGATCGTGATTCGTGACGTTTGGGCTTATAATCTCGA 405
Query 313 GTCAGAGTTTGAACTAATCAGCGGAATCGTTGAAGCTTACCCATTCATCTCCATGGATAC 372
|||||||||||| |||||||| |||||||| |||| ||||||||||||||| ||||||||
Sbjct 406 GTCAGAGTTTGACCTAATCAGAGGAATCGTCGAAGATTACCCATTCATCTCAATGGATAC 465
Query 373 AGAATTTCCCGGCGTGATTTTCAAGGCGGATCTAGCCGTTCTCCGTCTTGGAAACCCTAA 432
|||||||||||||||||||| |||||||||||| | ||||||||| | ||||||||||||
Sbjct 466 AGAATTTCCCGGCGTGATTTACAAGGCGGATCTCGACGTTCTCCGCCGTGGAAACCCTAA 525
Query 433 TTATCTCTACAATCTTCTCAAATCTAACGTCGATGCTTTAAGCTTAATCCAAGTCGGTCT 492
|||||||||||||||||||||||| ||||| || |||||||| || ||||||||||||||
Sbjct 526 TTATCTCTACAATCTTCTCAAATCCAACGTTGACGCTTTAAGTTTGATCCAAGTCGGTCT 585
Query 493 TACTCTCTCTGACGCCGACGGAAACCTCCCAGATCTCGGCGTTC---AAAACCGCCGATT 549
||||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct 586 TACTCTCTCCGACGCCGACGGAAACCTCCCAGATCTCGGCGGTCAAAAAAACCGTCGATA 645
Query 550 CATCTGGGAATTCAATTTCCGTGACTTCGACGTGGAGCGTGATCCACACGCGCCTGATTC 609
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 646 CATCTGGGAATTCAATTTCCGTGACTTCGACGTGGAGCGTGATCCACACGCTCCTGATTC 705
Query 610 CATCGAGCTGCTCCGTCGTCACGGGATCGATTTCGAGCGGAACCGTCGCGAAGGTGTTGA 669
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GATCGAGCTACTCCGTCGTCACGGGATCGATTTCGAGCGGAACCGTCGCGAAGGTGTTGA 765
Query 670 ATCGGGGAGGTTCGCGGAGCTGATGATGTCGTCGGGGTTGATCTGTAACGAGTCTGTGAG 729
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 766 ATCGGAGAGGTTCGCGGAGCTGATGATGTCATCGGGGTTGATCTGTAACGAGTCTGTGAG 825
Query 730 CTGGGTGACGTTTCACAGCGCCTACGATTTCGGTTACCTTGTGAAGATTCTCACGCGCCG 789
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 826 CTGGGTGACGTTTCACAGCGCGTATGATTTTGGTTACCTTGTGAAGATTCTCACGCGCCG 885
Query 790 GGAGCTTCCGGTGGCGTTGCGTGAGTTTTTACGGTTGCTTAGAGCTTTCTTCGGTGAGAG 849
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 886 GCAGCTTCCGGTGGCGTTGCGTGAGTTTTTAGGGTTGCTTAGAGCTTTCTTCGGTGATAG 945
Query 850 GGTTTATGATGTGAAGCATATTATGAGGTTTTGTGAGCAGAGGAGATTGTACGGTGGTTT 909
||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 946 GGTTTATGATGTGAAACATATTATGAGGTTTTGTGAGC--A-GAGATTGTATGGTGGTTT 1002
Query 910 GGACCGGGTTGCTCGGTCGCTTGAAGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGG 969
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GGACCGGGTTGCTCGGTCTCTTGAAGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGG 1062
Query 970 TTCGGATAGTTTGCTGACGTGGCAGGCGTTTCAGAGGATGAGGGATTTGTATTTCGTTGA 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TTCGGATAGTTTGCTGACGTGGCAGGCGTTTCAGAGGATGAGGGATTTGTATTTCGTTGA 1122
Query 1030 GGATGGGGCGGAGAAACACGCCGGAGTTTTGTATGGTTTAGAGGTTTTTTGAGG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 GGATGGGGCGGAGAAACACGCCGGAGTTTTGTATGGTTTAGAGGTTTTTTGAGG 1176
> AT3G44260.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:15952045-15953084 REVERSE
LENGTH=1040
Length=1040
Score = 713 bits (386), Expect = 0.0
Identities = 681/819 (83%), Gaps = 37/819 (5%)
Strand=Plus/Plus
Query 279 TCGTGATTCGTGACGTTTGGGCTGATAATCTCGAGTCAGAGTTTGAACTAATCAGCGGAA 338
|||||| |||||| || ||||| || |||||||| ||||| |||||||||||||||| ||
Sbjct 79 TCGTGACTCGTGAAGTCTGGGCGGAGAATCTCGAATCAGAATTTGAACTAATCAGCGAAA 138
Query 339 TCGTTGAAGCTTACCCATTCATCTCCATGGATACAGAATTTCCCGGCGTGATTTTCAAGG 398
|| | || | ||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 139 TCATCGACGATTATCCATTTATCTCAATGGACACAGAATTTCCCGGCGTGATTTTCAA-- 196
Query 399 CGGATCTAGCCGTTCTCC-GTCTT-GGAAACCCTAATTATCTCTACAATCTTCTCAAATC 456
| | ||| ||||| || || ||| ||| | |||| || | |||||| ||| |
Sbjct 197 ---A--T--CCGATCTCCGGT-TTACGAATCCC-GACGATCTTTATACTCTTCTTAAAGC 247
Query 457 TAACGTCGATGCTTTAAGCTTAATCCAAGTCGGTCTTACTCTCTCTGACGCCGACGGAAA 516
||||||||| ||| | |||||||||||||||||||| ||||||||||| | |||| ||
Sbjct 248 TAACGTCGACGCTCTCAGCTTAATCCAAGTCGGTCTCACTCTCTCTGATGTTAACGGTAA 307
Query 517 CCTCCCAGATCTC-G-G-CGTTCAAAACCGCCGATTCATCTGGGAATTCAATTTCCGTGA 573
||||||||| ||| | | || || |||| ||||||||||||| || |||||||||||
Sbjct 308 CCTCCCAGACCTCGGTGACGATCTTCACCGAGGATTCATCTGGGAGTTTAATTTCCGTGA 367
Query 574 CTTCGACGTGGAGCGTGATC-CACACGCGCCTGATTCCATCGAGCTGCTCCGTCGTCACG 632
||||||||||| |||||| | |||||||||||||||| |||||| |||| ||||| || |
Sbjct 368 CTTCGACGTGGCGCGTGA-CGCACACGCGCCTGATTCGATCGAGTTGCTTCGTCGGCAAG 426
Query 633 GGATCGATTTCGAGCGGAACCGTCGCGAAGGTGTTGAATCGGGGAGGTTCGCGGAGCTGA 692
| |||||||| |||||||| ||||||| |||||||| |||| |||||| ||||||||||
Sbjct 427 GTATCGATTTTGAGCGGAATTGTCGCGACGGTGTTGAGTCGGAGAGGTTTGCGGAGCTGA 486
Query 693 TGATGTCGTCGGGG-TTGATCTGTAACGAGTCTGTGAGCTGGGTGACGTTTCACAGCGCC 751
|||||||||||||| ||| | ||||| ||| |||||||||||||||||||| |||||
Sbjct 487 TGATGTCGTCGGGGCTTG-TTTGTAATGAGGAAGTGAGCTGGGTGACGTTTCATAGCGCG 545
Query 752 TACGATTTCGGTTACCTTG-TGAAGATTCTCACGCGCCGGGAGCTT--CCGGTGGCGTTG 808
|| ||||||||||| |||| ||||||||||||||||||| || || |||| ||||||
Sbjct 546 TATGATTTCGGTTA-CTTGATGAAGATTCTCACGCGCCGAGA-ATTGCCCGG-CGCGTTG 602
Query 809 CGTGAGTTTTTA-CG-GTTGCTTAGAGCT-TTCTTCGGTGAGAGGGTTTATGATGTGAAG 865
| ||| ||| | || | || | |||| | || || || ||| | || ||||||||||||
Sbjct 603 GGGGAG-TTTAAGCGCG-TGATGAGAG-TGTTGTTTGGGGAGCGTGTGTATGATGTGAAG 659
Query 866 CATATTATGAGGTTTTGTGAGCAGAGGAGATTGTACGGTGGTTTGGACCGGGTTGCTCGG 925
||||| |||| ||||||||| | |||||||||| |||||||||||||||||||| ||
Sbjct 660 CATATGATGAAGTTTTGTGA--A-AGGAGATTGTTTGGTGGTTTGGACCGGGTTGCAAGG 716
Query 926 TCGCTTGAAGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGGTTCGGATAGTTTGCTG 985
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 717 ACGCTTGAGGTTAACCGGGCGGTTGGGAAATGTCATCAAGCTGGTTCGGATAGTTTGCTT 776
Query 986 ACGTGGCAGGCGTTTCAGAGGATGAGGGATTTGTATTTCGTTGAGGATGGGGCGGAGAAA 1045
|||||||| ||||||||||||||||||||||||||||| ||| | |||||| ||||||||
Sbjct 777 ACGTGGCATGCGTTTCAGAGGATGAGGGATTTGTATTTTGTTCAAGATGGGCCGGAGAAA 836
Query 1046 CACGCCGGAGTTTTGTATGGT-TTAGAGGTTTTTTGAGG 1083
|| || || ||||||||||| || |||||||||| |||
Sbjct 837 CATGCTGGGGTTTTGTATGGGCTT-GAGGTTTTTTAAGG 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5