BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489076
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22260.1 | Symbols: MS1 | RING/FYVE/PHD zinc finger superfam... 3238 0.0
> AT5G22260.1 | Symbols: MS1 | RING/FYVE/PHD zinc finger superfamily
protein | chr5:7367635-7370295 REVERSE LENGTH=2194
Length=2194
Score = 3238 bits (1753), Expect = 0.0
Identities = 1992/2107 (95%), Gaps = 17/2107 (1%)
Strand=Plus/Plus
Query 1 ATCATAATATATATCCAAATCTATC--A----TATT-CC-CTCTTGTCAAGATCAAACCA 52
||||||||||||||||||||||||| | |||| || ||||| ||||||||||||||
Sbjct 31 ATCATAATATATATCCAAATCTATCATATTCCTATTCCCTCTCTTCTCAAGATCAAACCA 90
Query 53 AAGTTCTGATTCCATGGCGAATCTGATTCGAACAGATCATCAGCAGCATATTCCAAAAAA 112
|| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 91 AATTTCTGATTCGATGGCGAATCTGATTCGAACAGACCATCAGCAACATATTCCAAAGAA 150
Query 113 GAGGAAGAGAGGGGAAAGTAGGGTTTTCAGGCTGAAGACGTTCGGAGAGTCAGGACATCC 172
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 151 GAGGAAGAGAGGGGAAAGTAGAGTTTTTAGGCTGAAGACGTTCGGAGAGTCTGGACATCC 210
Query 173 AGCTGAGTTGAACGAGTTGTCCTTTCGAGACAACCTCGCGAAACTACTTGAGTTTGGTCA 232
||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 211 AGCTGAGATGAACGAGTTGTCTTTTCGAGATAACCTCGCTAAACTACTTGAGTTTGGTCA 270
Query 233 CTTTGAGAGCTCCGGTCTCATGGGAAGTTGGTCTTTTCAGCTCGAGATTCAACGCCACCC 292
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 271 CTTTGAGAGCTCCGGTCTAATGGGAAGTTGGTCTTTTCAGCTCGAGATTCAACGAAATCC 330
Query 293 AAATCCTCTTTATGTGCTTCTCTTTGTAGTAGAAGAGCCCATCGAAGCCTCTCTCAACCT 352
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 331 AAATCCTCTCTATGTTCTTCTCTTTGTCGTAGAAGAGCCCATCGAAGCCTCTCTCAATCT 390
Query 353 CCGTTGCAACCATTGCCAATATGTTGGTTGGGGAAACCAAATGATATGCAACAAGAAGTA 412
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 391 CCGTTGCAACCATTGCCAATATGTTGGTTGGGGAAATCAAATGATATGCAACAAGAAGTA 450
Query 413 CCATTTCGTGATCCCCTCAAAGGAAACGATGGCCGCCTTTCTAAAACTGGAAGGTGGAGG 472
||||||||||||||||||||||||||| ||||| || ||| |||||||||||||||||||
Sbjct 451 CCATTTCGTGATCCCCTCAAAGGAAACAATGGCGGCTTTTTTAAAACTGGAAGGTGGAGG 510
Query 473 CTACATTTTTCCTGAAAAGGAAAGTCTCTCCCAT-TTGGTGGAGCTTCAAGGCCATGTCC 531
|||| |||||| |||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 511 CTACGCTTTTCCCGAAAAGGAAAGTTTCTCCCATCTT-GTGGAGCTTCAAGGCCATGTCC 569
Query 532 TTCACGGCTTGTTTCACTCTAACGGATTTGGTCACTTGCTCTCTGTCAACGGCATTGAAA 591
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 570 TTCACGGCTTCTTTCACTCCAACGGATTTGGTCACTTGCTCTCTCTCAACGGCATTGAAA 629
Query 592 CCGGCTCCGACATAACCGGTCACCAAGTCATGGATTTGTGGGACCGGCTCTGCACCGGTT 651
||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 630 CCGGCTCCGACTTAACCGGTCATCAGGTCATGGATTTGTGGGACCGGCTCTGCACCGGTT 689
Query 652 TAAAGGCCAGGAAAATAGGGTTGAATGATGCATCGCACAAAAAAGGAATGGAGCTGAGGC 711
|||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 690 TAAAGGCCAGGAAAATAGGGTTGAATGACGCGTCGCACAAAAAAGGAATGGAGTTGAGGC 749
Query 712 TGCTGCATGGGGTAGCAAAAGGAGAGCCATGGTTCGGTCGTTGGGGCTACCGGTTTGGGT 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 750 TGCTGCATGGGGTAGCAAAAGGAGAGCCATGGTTCGGTCGTTGGGGCTACCGGTTCGGGT 809
Query 772 CAGGGACATACGGAGTGACTCAAAAGATTTACGAGAAGGCACTTGAATCGGTCCGTAACA 831
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 810 CAGGGACATACGGAGTGACTCAAAAGATTTACGAGAAGGCACTTGAGTCGGTCCGTAACA 869
Query 832 TACCCTTGTGCTTGCTTAACCATCACCTAACCAGCCTTAACCGAGAAACTCCATTCCTCT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 870 TACCCTTGTGCTTGCTTAACCATCACCTAACCAGCCTTAACCGAGAAACTCCAATCCTCT 929
Query 892 TGTCAAAGTACCAAAGTTTATCCACTGAGCCATTGATCACTCTCAGTGACCTCTTCAGGT 951
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 930 TGTCAAAGTACCAAAGTTTATCCACCGAGCCATTGATCACTCTCAGTGACCTCTTCAGGT 989
Query 952 TCATGCTTCATCTCCATTCGCGTCTTCCAAGAGATAACTACATGAATAACTCCCGAAACC 1011
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 990 TCATGCTTCATCTCCATTCACGTCTTCCAAGAGATAACTACATGAGTAACTCCCGAAACC 1049
Query 1012 AAATCATTTCCATTGATAGTAGCAACTGCAGATGGTCTCAAAAACGGATCCAAATGGCTA 1071
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1050 AAATCATCTCCATTGATAGTACCAACTGCAGATGGTCTCAAAAACGGATCCAAATGGCTA 1109
Query 1072 TCAAAGTGGTCATAGAGTCATTAAAAAGAGTCGAATACCGATGGATATCGAGGCAAGAAG 1131
|||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 1110 TCAAAGTGGTCATAGAGTCACTGAAAAGAGTCGAATACCGATGGATATCGAGACAAGAAG 1169
Query 1132 TGAGGGACGCAGCTAGAAATTACATCGGGGACACAGGTTTGCTTGATTTCGTTTTGAAGT 1191
||||||| ||||||||||||||||| |||||||| |||||||||||||| || |||||||
Sbjct 1170 TGAGGGATGCAGCTAGAAATTACATTGGGGACACTGGTTTGCTTGATTTTGTGTTGAAGT 1229
Query 1192 CGCTCGGGAACCAGGTGGTCGGAAACTATTTGGTCCGACGTAGTCTAAATCCGGTGAAGA 1251
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CGCTTGGGAACCAGGTGGTTGGAAACTATTTGGTCCGACGTAGTCTAAATCCGGTGAAGA 1289
Query 1252 AAGTGCTAGAGTATTGCTTGGAGGACATATCAAATTTGTTACCAAGTAGTAACAATGAAC 1311
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1290 AAGTGCTAGAGTATTCCTTGGAGGATATATCAAATTTGTTACCAAGTAGTAACAATGAAC 1349
Query 1312 TCATAACCCTTCAAAATCAAAACTCAATGGGGAAGATGGCGACGAACGGTCACAATAAGA 1371
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1350 TCATAACCCTTCAAAACCAAAACTCAATGGGGAAGATGGCGACAAACGGTCACAATAAGA 1409
Query 1372 TCACAAGAGGTCAAGTGATGAAAGACATGTTTTATTTTTACAAACACATTCTCATGGACT 1431
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 TCACAAGAGGTCAAGTTATGAAAGACATGTTTTATTTTTACAAACACATTCTCATGGACT 1469
Query 1432 ACAAGGGAGTTTTAGGCCCCATAGGAGGCATATTGAACCAAATCGGAATGGCTTCTAGAG 1491
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1470 ACAAGGGAGTGTTAGGCCCCATAGGAGGTATATTGAACCAAATCGGAATGGCTTCAAGAG 1529
Query 1492 CAATCCTCGATGCTAAGTACTTCATCAAAGAGTACCACTACATTAGGGATACATCGGCCA 1551
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1530 CAATCCTCGACGCTAAGTACTTCATCAAAGAGTATCACTACATTAGAGATACATCGGCGA 1589
Query 1552 AAACATTACATTTAGATCGAGGG-AACAAATTAGGAATATTCTGCACGATCGCATGGAAA 1610
|||| ||||| |||||||||||| || || ||||||||||||||||||||||| ||||||
Sbjct 1590 AAACGTTACACTTAGATCGAGGGGAAGAA-TTAGGAATATTCTGCACGATCGCGTGGAAA 1648
Query 1611 TGTCATCATCATAATAACGAGATTAAAA-TTCCTCCACAAGAATGCATAGTGGTTAAGAA 1669
|||||||||||||| |||||||| |||| ||||||||||||||||||| || || |||||
Sbjct 1649 TGTCATCATCATAACAACGAGAT-AAAAGTTCCTCCACAAGAATGCATTGTAGTGAAGAA 1707
Query 1670 AGATGCAACATTGAGTGAAGTGTATGGAGAGGCAGAAAGAGTGTTTAGAGAGATCTATTG 1729
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1708 AGATGCAACATTGAGTGAAGTGTACGGAGAGGCAGAAAGAGTGTTTAGAGATATCTATTG 1767
Query 1730 GGAACTAAGAGACGTCGTGGTGCAGTCACTGGCAGATGGTCAAAGAGAGATCACAAGGGT 1789
|||||||||||||||||||||| ||||| ||| | |||||||| |||||||||||||||
Sbjct 1768 GGAACTAAGAGACGTCGTGGTGGAGTCAGTGGTGGGTGGTCAAATAGAGATCACAAGGGT 1827
Query 1790 CGATGAAATGGCCATGATGAATTGGAATAAAGGATTGGTGTTAGAAGGGAATGTAGgaat 1849
||||||||||||| | ||||| ||||||| |||||||||||||||||||| ||||||||
Sbjct 1828 CGATGAAATGGCC-T--TGAATGGGAATAAGGGATTGGTGTTAGAAGGGAACGTAGGAAT 1884
Query 1850 gatgatgaacattgaagtgatgaaatgttatgaagatgatgatAAAAAGAAGGATAAGAG 1909
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1885 GATGATGAACATTGAAGTGACGAAATGTTATGAAGATGATGATAAAAAGAAGGATAAGAG 1944
Query 1910 AATTGAGTGTGAGTGTGGAGCAAAGGAAGAAGATGGAGAGAGAATGGTGTGTTGTGATAT 1969
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1945 AATAGAGTGTGAGTGTGGAGCAACGGAAGAAGATGGAGAGAGAATGGTGTGTTGTGATAT 2004
Query 1970 ATATGAAGTATGGCAACACACAAGGTGTGTTGGCGTTCAACACAATGAGGAAGTTCCTCG 2029
| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2005 TTGTGAAGTATGGCAACACACAAGGTGTGTTGGTGTTCAACACAATGAGGAAGTGCCTCG 2064
Query 2030 CATTTTTCTTTGTCAAAGTTGTGACCAACATCTTATTCCTCTCTCTTTTTTACCTTAAAC 2089
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2065 CATTTTTCTTTGTCAAAGTTGTGATCAACATCTTATTCCTCTCTCTTTTTTACCCTAAAT 2124
Query 2090 CATTCAT 2096
|||||||
Sbjct 2125 CATTCAT 2131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105370943955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5