BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489077

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22270.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   658    0.0  


> AT5G22270.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G11600.1); 
Has 136 Blast hits to 136 proteins in 15 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:7372233-7373102 
REVERSE LENGTH=646
Length=646

 Score =  658 bits (356),  Expect = 0.0
 Identities = 447/488 (92%), Gaps = 17/488 (3%)
 Strand=Plus/Plus

Query  1    ACTACTAGTCTTTACCAAGAATAATATATCAACATACATAG--TACTCTTCTTGGAAGGC  58
            |||||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||
Sbjct  44   ACTACTAGTCTTCACCAAGAATAATATATCAACACACATAGTATACTCTTCTTGGAAGGC  103

Query  59   AAGGAACATGAATCACGAAGCTGCGAGTAACCTTGAACTTGATCTGAAACTAAATATTTC  118
            ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  104  AAGGAACATGAATCAAGAAGCTGCGAGTAACCTTGGACTTGATCTGAAACTAAATATTTC  163

Query  119  ACCATCGTTGGATTCATCTTTGCTCACTGAGAGTTCATCGTCATCGTTATGCTCGGAGGA  178
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  164  ACCGTCGTTGGATTCATCTTTGCTCACTGAGAGTTCATCGTCATCGTTATGCTCGGAGGA  223

Query  179  AGCTGAGGGTGGAGGAGGAGAGGCTAAATCAATGGTGGTCGTTGGTTGCCCTAATTGCAT  238
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  224  AGCTGAGGGTGGAGGAGGAGAGGCTAAATCAATGGTGGTCGTTGGCTGCCCTAATTGCAT  283

Query  239  CATGTACATCATCATCT-CTTTAGAGAGTGACCCTAGATGCCCTAGATGCAACAGCCATG  297
            |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  284  CATGTACATCATCA-CTTCTTTAGAGAATGACCCTAGATGCCCTAGATGCAACAGCCATG  342

Query  298  TTTTGCTTGATTTTCTCACAGGAAACCATAGCAAGAAGAACACTAATTAAGaaaaaaaac  357
            ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| 
Sbjct  343  TTTTGCTTGATTTTCTCACAGGAAACCATAGCAAGAAGAGCACTAGTTAAAAAAAAAAAT  402

Query  358  aaaacaaaa---ca-aat-t-aag--aa---tgttcttttccttt-ctttctttttt-ta  404
            |||| ||||   || ||| | ||   ||   |||||||||  ||| ||||||||||| | 
Sbjct  403  AAAAAAAAAATACATAATATTAAATTAAGGATGTTCTTTTATTTTTCTTTCTTTTTTCTT  462

Query  405  aaaaaaaaTTTGTTGCCACATTTATTGATAGTTTGAATTAATCTACGATGAACGGATATG  464
                  ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct  463  TTCCTTAATTTGTTGCCACATTTATTGATAGTTTGAATTAATCCACAATGAACGGATATG  522

Query  465  TTCATAAA  472
            ||||||||
Sbjct  523  TTCATAAA  530



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26071522293


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5