BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489079
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22280.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 488 3e-137
AT3G44280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 294 6e-79
> AT5G22280.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages. | chr5:7373995-7375719
REVERSE LENGTH=925
Length=925
Score = 488 bits (264), Expect = 3e-137
Identities = 305/324 (94%), Gaps = 5/324 (2%)
Strand=Plus/Plus
Query 387 AGATCATCTTGTCACAAGAGAGACATATCCAGAGGCTAAACGACCTTGTACGAAGTCTTC 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGATCATCTTGTCACAAGAGAGACATATCCAGAGGCTAAACGACCTTGTACGAAGTCTTC 596
Query 447 AACTGCAGTTACAGCGATGCAAAGGAGAGAACGAGACACGAAACGCTACTGAAACCTCCC 506
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 597 AAATGCAGTTACAGCGATGCAAAGGAGAGAACGAGACACGAAACGCCACTGAAACCTCCC 656
Query 507 ATC-TAAACAAACAGTTCATTGAGCTCGAGAGGAAACACATCGTGGAAGACTAGTATTTC 565
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATAATAA-CAAACAGTTCATTGAGCTCGAGAGGAAACACATCGTGGAAGACTAGTATTTC 715
Query 566 CTCCGTTATTACAACAGCTCTAATAAATAACCCAAATGGTACGTAAAAACTGTTGTAATT 625
||||| | | ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTCCGGT-T-ACATCAATTCTAATAAATAACCCAAATGGTACGTAAAAACTGTTGTAATT 773
Query 626 TACTTTTGTTGTGTTAGAA-CCTTGCCGATGATTTGATTAGAAGGATGAATTACTTTGTT 684
|||||||||||||||| || |||||| |||| ||||||||||||||||| ||||||| ||
Sbjct 774 TACTTTTGTTGTGTTAAAAACCTTGCTGATGTTTTGATTAGAAGGATGATTTACTTTATT 833
Query 685 CATGAGTAAGATTGAGATATTTAA 708
|| | |||||||||||||||||||
Sbjct 834 CACGTGTAAGATTGAGATATTTAA 857
Score = 479 bits (259), Expect = 2e-134
Identities = 355/398 (89%), Gaps = 20/398 (5%)
Strand=Plus/Plus
Query 1 TCTAGCCGCCATTAAACCTCTGCTTTGCGTTTCTTTCTCTCTTCTTCTATACGAGAAATC 60
||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |
Sbjct 10 TCTCGCCGCCATTAAACCTCTGCTTT-TGTTTCTTTCTCTCTTCTTCTATACGAG-AACC 67
Query 61 CAtttttttGGTAGAAGACAAGTCGCCTCACTACTCCGTTAAGCCGATTTTATCGA--AA 118
|| |||||| ||||| ||||| ||||| |||||||| ||||||||||||| ||
Sbjct 68 CA---TTTTGG-AGAAGTCAAGTTTCCTCAATACTCCGTCAAGCCGATTTTATTGATCTC 123
Query 119 GATC--TTCTCGATCAGTTTCTT-CAATTTAAGAAGCCCTAGAAAAGCTGATGATTCGAT 175
|||| || ||| ||| ||| || | |||||||| ||||||||||||||||||||||||
Sbjct 124 GATCAGTT-TCG-TCAATTT-TTCCGGTTTAAGAAACCCTAGAAAAGCTGATGATTCGAT 180
Query 176 AATGAAGTTTGATTTCACTGTGCA-ACTTCGATCTG-TAAGTTGGAGCTAG-ATAGAAAA 232
|||||||||||||||||||||| | | |||||||| | || ||||| | |||| |||
Sbjct 181 AATGAAGTTTGATTTCACTGTG-ATAAATCGATCTGTTTTGTAAGAGCT-GAATAG-AAA 237
Query 233 ATGTCGAGGCCGATCATGCTCGTCTTTCTTCTGGTTATACTTATAGTCACTTCTCAGTTT 292
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATGTCGAGGCCGATCATGCTAGTCTTTCTTCTGGTTATACTTATAGTCACTTCTCAGTTT 297
Query 293 GAATGGAGGCAACCACTTCTTGAGCTTGATGCAGCTCCTAGCTTGTCTCAGAAACATCAG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAATGGAGGCAACCACTTCTTGAGCTTGATGCAGCTCCTAGCTTGTCTCAGAAACATCAG 357
Query 353 CAAATTGCTAAGAGGGAAGAAGCTGTCAAGGAGAAGAT 390
|||||||| |||||||||||||||||||||||||||||
Sbjct 358 CAAATTGCAAAGAGGGAAGAAGCTGTCAAGGAGAAGAT 395
> AT3G44280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G22280.1);
Has 82 Blast hits to 82 proteins in 13 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15968593-15971167
REVERSE LENGTH=766
Length=766
Score = 294 bits (159), Expect = 6e-79
Identities = 279/336 (83%), Gaps = 11/336 (3%)
Strand=Plus/Plus
Query 229 AAA-AATGTCGAGGCCGATCATGCTCGTCTTTCTTCTGGTTATACTTATAGTCACTTCTC 287
||| |||||||| ||| || ||||||| | ||| || |||||||||||||| || ||||
Sbjct 268 AAACAATGTCGAAACCGGTCCTGCTCGTGTGTCTACTAGTTATACTTATAGTTACCTCTC 327
Query 288 AGTTTGAATGGAGGCAACCACTTCTTGAGCTT-GATGCAGCTC-CTAGCTTGTCTCAGAA 345
||||||||||||||||||||||| ||||| || ||| |||| | |||||| |||||||||
Sbjct 328 AGTTTGAATGGAGGCAACCACTTGTTGAG-TTAGATACAGC-CACTAGCTCGTCTCAGAA 385
Query 346 ACATCAGCAAATTGCTA-AGAGGGAAGAAGCTGTCAAGGAGAAGATCATCT-TGTCACAA 403
||| ||||||||| | | | ||||||||||||||||| ||||||||||| | | ||||||
Sbjct 386 ACAGCAGCAAATTTC-AGATAGGGAAGAAGCTGTCAAAGAGAAGATCAT-TATATCACAA 443
Query 404 GAGAGACATATCCAGAGGCTAAACGACCTTGT-ACGAAGTCTTCAACTGCAGTTACAGCG 462
||||||||||||||||||||||| || || || | || |||||||| ||||||| | ||
Sbjct 444 GAGAGACATATCCAGAGGCTAAATGAGCTAGTCAGGA-GTCTTCAATTGCAGTTGCTGCA 502
Query 463 ATGCAAAGGAGAGAACGAGACACGAAACGCTACTGAAACCTCCCATCTAAACAAACAGTT 522
|||||| |||||||| ||||| | ||| || || ||| || ||| |||| ||||| ||
Sbjct 503 ATGCAAGGGAGAGAATGAGACCCAAAATGCCACCAAAAGCTATCATATAAATAAACAATT 562
Query 523 CATTGAGCTCGAGAGGAAACACATCGTGGAAGACTA 558
||| ||| |||| |||||||| ||| |||||| |||
Sbjct 563 CATCGAGGTCGAAAGGAAACAAATCCTGGAAGGCTA 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5