BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489082
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2283 0.0
> AT5G22310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G11590.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7383629-7385734 REVERSE LENGTH=1948
Length=1948
Score = 2283 bits (1236), Expect = 0.0
Identities = 1707/1920 (89%), Gaps = 89/1920 (5%)
Strand=Plus/Plus
Query 1 ACACTGTCTCCATCTCTCTTTCCTCTTCTTCCACATCTTTCTTCTCCCAAGAAAATAAAA 60
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 4 ACACTGTCTCCATCTTTCTTTCCTCTTCTTCAACATCTCTCTTCTCCCAAGAAAATAAAA 63
Query 61 CACAATTTCCCAGATTCAAAACTTC-TTTT------T--CAACGTCTTCAAAGGGATTAA 111
||||||||||||||||||||||||| |||| | |||||||||||||||||| ||
Sbjct 64 CACAATTTCCCAGATTCAAAACTTCTTTTTCACAAATCACAACGTCTTCAAAGGGATCAA 123
Query 112 GAATCTT-TGT-GTCTTCTCTTCTTTTG-TTTAGTTACACA-AAG-AAAAACATCATCCT 166
||||||| | | ||||||||||||||| ||| | | | | ||| |||||||||||| |
Sbjct 124 GAATCTTAT-TACTCTTCTCTTCTTTTGCTTT--TAAGA-AGAAGTAAAAACATCATCTT 179
Query 167 AACTTTCCCTTTTTGTATTAtctctctctctctctTTTACTCACTTTAAAGTCTCTTAAT 226
||||||| |||||||||||| ||| | ||||||| |||||||||||||||| || |
Sbjct 180 AACTTTCACTTTTTGTATTA----TCT-T-TCTCTTTCACTCACTTTAAAGTCTATTTAG 233
Query 227 AGATTCAAACACAAAATCTTCCAGAAACTGCTTCTGATCTTAAAAAGATGACCCACTTCT 286
||||||||| ||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 234 AGATTCAAAAACAAAATCTTCCAGAAACTGCTTCTGATCTT-AGAAGATGACTCACTTCT 292
Query 287 CCTAAAAAGTACCAATTTCAA-CACTAtttttttCTCTTCTTTTCCTTCAAAAGATTTGG 345
||||||||| ||||||||||| | ||||||||||||||| |||||| | |||||||||
Sbjct 293 CCTAAAAAGCACCAATTTCAATC-CTATTTTTTTCTCTTGTTTTCCGGC--AAGATTTGG 349
Query 346 TaaaaaaaaTTTGT-TTCTGA--T-TTG--TTG-------ACTATGG---AACGGAAGAG 389
| |||| ||||| |||||| | ||| ||| ||||||| |||||||||
Sbjct 350 T---AAAATTTTGTGTTCTGATTTGTTGTTTTGAATATCAACTATGGAACAACGGAAGAA 406
Query 390 AGGTTGTAAGATCAGAAAGAGAGGTGGttcttcctcttcttcttcttctcttGCTCGCCG 449
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 407 AGGTTGTAAGATCAGGAAGAGAGGTGGTTCTTCCTCTTCTTCTTCTTCACTTGCTCGTCG 466
Query 450 AAACCGTTTCAAACGCGCAATTTTCGCCGGGAAAAGAGTTGCTCAAGATGATGGTGGTGG 509
|||||| |||||||| |||||||||||||||||||||| |||||||| ||
Sbjct 467 AAACCGCTTCAAACGTGCAATTTTCGCCGGGAAAAGAGCCGCTCAAGACGA--------- 517
Query 510 TGGCGGTGGCTCAGGAACTCCGGTTAAGTCCATCACCGCCGCTAAAACTCCTGTCCTGTT 569
|||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 518 ---CGGTGGCTCAGGAACTCCTGTTAAGTCCATCACCGCCGCTAAAACTCCAGTTCTGTT 574
Query 570 ATCGTTTTCGCCGGAAAATCTTCCTATAGATCATCATCAATTACAGAAAAGCT-CTGTCT 628
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | || |
Sbjct 575 ATCGTTTTCGCCGGAAAATCTTCCTATAGATCATCATCAATTGCAGAAAAGCTGC-GTGT 633
Query 629 CTGCGAGAAAGCTAGCTGCGACGCTATGGGAAATCAACGACGACGCAGACCCTCCTGTAG 688
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 634 CGGCGAGAAAGCTAGCTGCGACGCTGTGGGAAATCAACGACGACGCAGACCCTCCGGTAA 693
Query 689 ATTCCAATAAAGATTGCTTGAGAAGCAAGAAACCGTCGAGACACAGATCGAAGAAATCAA 748
|||| |||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 694 ATTCTGATAAAGATTGCTTGAGAAGCAAGAAACCATCGAGATACAGAGCGAAGAAATCAA 753
Query 749 CAGAGTTATCTTCCATTGATTTCCCGCCAAAATCATCCGATCCGATTTCTCGTCTAACCT 808
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 754 CAGAGTTCTCTTCCATTGATTTCCCGCCACGATCATCCGATCCGATTTCTCGTCTAAGCT 813
Query 809 CAGAGAGAATCGATCTCCGTGAAGAT-TTAGTTCGTAGAAGACCAGGAAATCATCAGAAA 867
||||||||||||||||| |||| ||| | | ||||||||||| || ||||| |||||||
Sbjct 814 CAGAGAGAATCGATCTCTGTGACGATATGA-TTCGTAGAAGATCAACAAATCCTCAGAAA 872
Query 868 CTACACCTAATTGAACACAAAACCATTGTCACAAACTCGCTGAAAACTCGTTTGAAGAAT 927
|| ||| ||||||| |||||| ||||| | |||||||| ||||||||||||| ||||||
Sbjct 873 TTAAACCCAATTGAATACAAAATCATTGGCGCAAACTCGGTGAAAACTCGTTTCAAGAAT 932
Query 928 GTCAGTGAAGGATTAACAACGTCTAAAGAACTCGTTAAGGTTTTAAAAAGGATCGGTGAG 987
|||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 933 GTCAGTGACGGATTAACAACGTCTAAAGAACTGGTAAAGGTATTAAAAAGGATCGGTGAG 992
Query 988 CTGGGAGATGATCACAAGACAGCAAGCAATCGTTTGATCTCTGCTCTGTTATGCGAACTA 1047
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 993 CTCGGAGATGATCACAAGACAGCAAGCAATCGTTTGATCTCTGCTTTGTTATGTGAACTA 1052
Query 1048 AACAGAGCAAGATCTTCTTTAAAGCATCTGATGAGTGAATTTGATGCGGAGGAGGAGGAG 1107
|||||||||||||||| |||||||||| ||||||||||| |||| ||||| ||||||
Sbjct 1053 GACAGAGCAAGATCTTCACTAAAGCATCTAATGAGTGAATTAGATGAAGAGGAAGAGGAG 1112
Query 1108 AAGCGGAGGTTGATAGAGAGGCTACAAGAAGAAGCGGTGGTTGAGAGAAAACTCCGGCAA 1167
|||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |
Sbjct 1113 AAGCGGAGGTTGATAGAGAGTCTACAAGAAGAGGCGATGGTTGAGAGAAAACTCCGGCGA 1172
Query 1168 AGAACGGAGAAGATGAACAGAAGATTAGggagagagctcgcggaggctaaagaaacagag 1227
||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1173 AGAACAGAGAAGATGAATAGAAGATTAGGGAGAGAGCTCACGGAGGCTAAAGAAACAGAG 1232
Query 1228 aggaagatgaaggaggagatggagagagagaagagagCTAAAGATGTTCTTGAAGAGGTT 1287
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1233 AGGAAGATGAAGGAGGAGATGAAAAGAGAGAAGAGAGCTAAAGATGTTCTTGAAGAGGTT 1292
Query 1288 TGTGATGAGCTCGCGAAAGGAATCGgagatgataagaaggagatagagaaagagagagag 1347
||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1293 TGTGATGAGCTAACTAAAGGAATCGGAGATGATAAGAAGGAGATGGAGAAAGAGAGAGAG 1352
Query 1348 atgatgcatatagctgatgttttgagggaagagagagTTCAAATGAAGCTTACGGAGGCG 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 ATGATGCATATAGCTGATGTTTTGAGGGAAGAGAGAGTTCAAATGAAGCTTACGGAGGCG 1412
Query 1408 AAATTTGAGTTCGAGGATAAATACGCTGCCGTGGAGCGGCTGAAGGTGGAGCTCCGGAGG 1467
|| ||||||||||| ||||||||||| |||||||||||||||||| |||||||||| ||
Sbjct 1413 AAGTTTGAGTTCGAAGATAAATACGCCGCCGTGGAGCGGCTGAAGAAGGAGCTCCGGCGG 1472
Query 1468 GTTTTAGATGGTGAAGAAGGAAATGGGTCGTCGGAGATTCGTCGGATTTTGGAGATAATG 1527
||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| | ||
Sbjct 1473 GTTTTGGATGGTGAAGAAGGAAAAGGGTCGTCGGAGATTCGTAGGATTTTGGAGGTGATT 1532
Query 1528 GACGGTTCTGGTTCTGATGATGAGGAGGAGAGTGATCTTAAGTCGATTGAGTTGAATATG 1587
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1533 GATGGTTCTGGTTCTGATGATGATGAGGAGAGTGATCTTAAGTCCATTGAGTTGAACATG 1592
Query 1588 GAGAGTGGAAGTAAGTGGGGTTATGTTGAAAGCGGGAGAGATCACCGGAGGGAATCAAGA 1647
|||||||| ||||| |||||||||||||| ||| || ||||| ||||| | |
Sbjct 1593 GAGAGTGGTAGTAAATGGGGTTATGTTGATAGCCTGAAAGATCGTCGGAG--A-T----- 1644
Query 1648 TTTGGTGGCTCCGGCGATGAGGACGACgatgatgatgatgatgatgatgatCCTGTGGAG 1707
|| | ||||||||||| | ||| |||||||||||||||| || ||||||
Sbjct 1645 TT-GATGGCTCCGGCG--G----CGA---TGATGATGATGATGAT------CCGGTGGAG 1688
Query 1708 AAGAGATCAGTGATTGTTGAGAATGGGGAGAGAGATGAGTCTTTGAAGACTCTGAGAGAT 1767
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1689 AAGAGATCAGTGATTGTTGAGAATGGTGAGAGAGATGAGTCTTTGAAGACTTTGAGAGAT 1748
Query 1768 TACATTGTTTCAAATGTTAGATGTGTCGGTCCTTCATCGTCGGAGCAGTGGAATCATCGG 1827
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 1749 TACATTGTTTCAAATGTTAGATGTATTGGTCCTTCATCGTCAGAGCAGTGGAATCATCGG 1808
Query 1828 AATTTACCAAGCTCTGAGTTTGTGTAATCACCACCGCTAGCGCCGGCGAGaaa-aaaaaG 1886
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1809 AATTTACCAAGCTCTGAGTTTGTGTAATCACCACCGCTAGCGCCGGCGAGGAAGAAAAAG 1868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93373013700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5