BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489084
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17277.1 | Symbols: | transposable element gene | chr1:5915... 804 0.0
AT1G78355.1 | Symbols: | transposable element gene | chr1:2947... 606 5e-173
> AT1G17277.1 | Symbols: | transposable element gene | chr1:5915644-5916212
REVERSE LENGTH=498
Length=498
Score = 804 bits (435), Expect = 0.0
Identities = 478/499 (96%), Gaps = 2/499 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTGCAATTCAAGGAATTCGAATGTTGAAAGTGGAGGTTGCAATTCAGGGATGATT 60
||||||||||| ||||||||||||| || |||||||||||| ||||||||||| ||||||
Sbjct 1 ATGAGCTGCAACTCAAGGAATTCGAGTGGTGAAAGTGGAGGCTGCAATTCAGGAATGATT 60
Query 61 TCGAATGTTGAAGCTGGAGGTTTCAATAGCCGTGGGTTTCCTGTTAAGTGTAAATGTGGG 120
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCGAATGCTGAAGCTGGAGGTTTCAAGAGCCGTGGGTTTCCTGTTAAGTGTAAATGTGGG 120
Query 121 CTAGACGTCGTCATGTTAACATCGAGCACGCCGAAGAACCCTGGAAGGCCTTTCTTTCGG 180
|| |||||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 121 CTCGACGTCGTCATGTTTACATCGAGCACGGCTAAGAACCCTGGAAGGCCTTTCTTTCGG 180
Query 181 TGCAAAAGCTGTAAAGATGATCATTTGTTCAAATGGGTGGAGGATTGTATGTATGAAGAG 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCAAAAGCTGTGAAGATGATCATTTGTTCAAATGGGTGGAGGATTGTATGTATGAAGAG 240
Query 241 GTTGTAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATTATCAATGCAAAAGCT 300
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GTTATAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATAATCAATGCAAAAGCT 300
Query 301 GAGGTTGCAGTTGAAATTGCAAACTTAAAGGAGCTAATGATAGAGTTGAAAGAAGATGGA 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGGTTGCTGTTGAAATTGCAAACTTAAAGGAGCTAATGATAGAGTTGAAAGAAGATGGA 360
Query 361 CTGTGGAGCAAAAGAGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTGGTGTGC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGTGGAGCAAAAGAGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTGGTGTGC 420
Query 421 CTTTGTTTTAGTGTCATTGCAATTGTGATATCAATGTTCTATAAGACAAAAAACC-AGAA 479
|||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct 421 CTTTGTTTTAGTGTGATTGCAATTGTAATATCAATGTTCTATAAGA-AAAAAACCCAGAA 479
Query 480 ATTTGTTTTTGGTTATTAG 498
||||||| |||||||||||
Sbjct 480 ATTTGTTCTTGGTTATTAG 498
> AT1G78355.1 | Symbols: | transposable element gene | chr1:29478504-29479108
REVERSE LENGTH=450
Length=450
Score = 606 bits (328), Expect = 5e-173
Identities = 353/365 (97%), Gaps = 1/365 (0%)
Strand=Plus/Plus
Query 55 ATGATTTCGAATGTTGAAGCTGGAGGTTTCAATAGCCGTGGGTTTCCTGTTAAGTGTAAA 114
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGATTTCAAATGTTGAAGCTGGAGGTTTCAAGAGTCGTGGGTTTCCTGTTAAGTGTAAA 60
Query 115 TGTGGGCTAGACGTCGTCATGTTAACATCGAGCACGCCGAAGAACCCTGGAAGGCCTTTC 174
|||||||| || ||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 61 TGTGGGCTCGAAGTCGTCATGTTTACATCGAGCACGACTAAGAACCCTGGAAGGCCTTTC 120
Query 175 TTTCGGTGCAAAAGCTGTAAAGATGATCATTTGTTCAAATGGGTGGAGGATTGTATGTAT 234
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TTTCGGTGCAAAAGCTGTAAAGATGATCATTTGTTCAAATGGGTGGAGGAGTGTATGTAT 180
Query 235 GAAGAGGTTGTAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATTATCAATGCA 294
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GAAGAGGTTGTAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATAATCAATGCA 240
Query 295 AAAGCTGAGGTTGCAGTTGAAATTGCAAACTTAAAGGAGCTAATGATAGAGTTGAAAGAA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGCTGAGGTTGCAGTTGAAATTGCAAACTTAAAGGAGCTAATGATAGAGTTGAAAGAA 300
Query 355 GATGGACTGTGGAGCAAAAGAGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTG 414
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATGGAATGTGGAGCAAAAGAGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTG 360
Query 415 -GTGT 418
||||
Sbjct 361 TGTGT 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23760751531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5