BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489085
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22320.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2065 0.0
> AT5G22320.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:7388004-7390485 REVERSE LENGTH=1589
Length=1589
Score = 2065 bits (1118), Expect = 0.0
Identities = 1307/1396 (94%), Gaps = 22/1396 (2%)
Strand=Plus/Plus
Query 1 AAGGAAGAAGACGAAGACGGCGATGAATTCGTTAACCGTTGAACAAGTACTGAAAGAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 38 AAGGAAGAAGACGAAGACGGCGATGAATTCGTTAACCGTTGAACAAGTATTGAAAGAGAA 97
Query 61 GAAGACCCATGACCCAGATTTCGTCAAGGAACTTAATCTCGGCCACAAAGCTCTCACCGA 120
||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 98 GAAGACCAATGACCCAGATTCCGTCAAGGAACTTAATCTCGGCCATAAAGCTCTCACCGA 157
Query 121 CGTGTCTTGTTTGAGCAAATTCAAAAACTTGGAGAAGCTTGATCTTCGTTTCAACAATCT 180
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 158 CGTGTCTTGTTTGAGCAAGTTCAAAAACTTGGAAAAGCTTGATCTTCGTTTCAACAATCT 217
Query 181 CAA-GGATCTTCAGGGACTCAAGTCTTGTGTGAACTTGAAATGGCTTTCAGTTGTGGAGA 239
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 218 -AACAGATCTTCAGGGACTCAAGTCTTGTGTGAACTTGAAATGGCTTTCAGTTGTGGAAA 276
Query 240 ATAAATTGCAAAGCTTAAAAGGAATTGAAGCACTCACTAAGCTTACGGTGCTAAATGCTG 299
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 277 ACAAATTGCAAAGCTTAAATGGAATTGAAGCACTCACTAAGCTTACGGTGCTTAATGCTG 336
Query 300 GAAAGAATCAGCTCAAATCCATGAATGAGATCTCTTCTCTTGTCAATTTGCGGGCATTGA 359
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 337 GAAAGAATAAGCTCAAATCCATGAATGAGATCTCTTCTCTTGTCAATTTACGGGCCTTGA 396
Query 360 TTTTGAATGACAATGAAATCTCCTCCATTTGCAAGCTAGATCTACTGAAAGACTTGAACA 419
| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 397 TCTTGAATGACAATGAAATCTCCTCCATTTGCAAGCTTGATTTACTCAAAGACTTGAACA 456
Query 420 GTCTCGTTCTTTCTAGGAACCCAATCAGTGAAATCGGTGACTCACTTTCAAAGTTGAAAA 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 457 GTCTCGTTCTTTCTAGGAACCCAATCAGTGAAATAGGTGACTCACTTTCAAAGTTGAAAA 516
Query 480 ACCTCTCTAAAATTTCTTTGTCTGACTGCAGAATAAAAGCTATTGGTTCTTCTCTCAAGT 539
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 517 ACCTCTCCAAAATTTCTTTGTCTGACTGCAGAATAAAAGCTATTGGCTCTTCTCTCAAGT 576
Query 540 CATGCTCTGATTTGAAAGAGCTGCGACTCGCGCACAATGAAATTAAGGCCCTCCCAGCAG 599
||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct 577 CATGCTCTGATTTGAAAGAGCTGCGGCTCGCGAACAATGAAATCAAGGCTCTCCCAGCAG 636
Query 600 AACTAGCAGTCAACAAAAGACTACTGAATTTGGATGTGGGAAACAATATGATTACAAAAC 659
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 637 AACTAGCAGTCAACAAAAGACTACTCAATTTGGATGTGGGAAACAATGTGATTACGCAAC 696
Query 660 TCTCTGGTTTAGAGGTTTTGGGTACACTATCTTGCTTGCGAAACCTGAATATTCGAGGAA 719
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 697 TCTCTGGTTTAGAGGTTTTGGGTACACTATCTTGCTTGCGAAATCTGAATATTCGAGGAA 756
Query 720 ACCCGATCTCTGATAACGAGAAGTCAGCTAAGAAGGTGAGAACGTTGCTCCTCCCTTCAG 779
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 757 ACCCGATTTCTGATAACGATAAGTCAGCTAAGAAGGTGAGAACGTTGCTTCTCCCTTCAG 816
Query 780 TGAATGTATTCAACGCTCAACCCTTAGAAAAAAGCTCAAGGAATGCAAAGCATACCCGGC 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 817 TGAATGTATTCAACGCTCAACCCTTAGAAAAAAGCTCAAGGAATGCAAAGCATATTCGGC 876
Query 840 TTGATACCGATGATGAAAACTTTGATGC-TCATCACAACAAATCAGGAGAAGAAGAACAA 898
|||||||||||||||||| ||||||||| | ||||||| ||||||| |||||| ||||||
Sbjct 877 TTGATACCGATGATGAAACCTTTGATGCCT-ATCACAATAAATCAGCAGAAGAGGAACAA 935
Query 899 TCcaaagaagatcgaaaaagcaataagagctccaagagaaacaagtcagaagaagaagaa 958
|| ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||
Sbjct 936 TCTAAAGAAGATCGAAAACGCAAGAAGAGCTCTAAGAGAAATAAGTCAGAAGAAGAAGAA 995
Query 959 gaagaagccaacaatgatgatcacaagaccaagaagaagaagtctaagaGCAACCCAAAT 1018
| | |||||||| |||||||| | ||||||||||||||||||||||||| |||||
Sbjct 996 GT-----C-AACAATGAGGATCACAAAAGCAAGAAGAAGAAGTCTAAGAGCAACACAAAT 1049
Query 1019 GTAGATCAAGTTgaaacagaaaagaaagaagaacagaaacagaagaaaaTTCAAAGTAAC 1078
|||||||||||||||||| |||||||||||||||| ||| |||||| ||| | |||||||
Sbjct 1050 GTAGATCAAGTTGAAACAAAAAAGAAAGAAGAACATAAAGAGAAGACAATCCCAAGTAAC 1109
Query 1079 AATGA--A-GATGATGATGCTGAGAAGAAACAGAAAAGGGCTACTCCAAAGGAGGAACTC 1135
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 AATGATGATGATGATGATGCTGAGAAGAAACAGAAAAGGGCTACTCCAAAGGAGGAACTC 1169
Query 1136 GATGCTATTGATGATGCTGAAACCTCTTTTGCAGAAATCTTTTCCCGGGAAAATGTGTCA 1195
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1170 GATGCTATAGATGATGCTGAAACCTCTTTCGCAGAAATCTTTTCCCGGGAAAATGTGCCA 1229
Query 1196 AAGGGTTCTTCTGGTGACGGTATTGAGAAGAAGAAGAGAAGCAGTGTGCAAGAGACAGGT 1255
||||||||| | |||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 1230 AAGGGTTCT---GAAGACGGTATTGAGAAGAAGAAGAAAAGCAGCGTCCAAGAGACAGGT 1286
Query 1256 TTAGTGAAAGTGATAGATACTAAAGCTAACAAGAAGAA-AAT-----TGAAAAGAAGCAA 1309
||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1287 TTAGTAAAAGTGATAGATACTAAAGCTAACAAGAAGAAGAAGAAGAGTGAAAAGAAGCAA 1346
Query 1310 AGCAAGAGTGTAGTGATTGATCTTCCCATGGAAGTTGAGATCGGGTTAGGAGGAGAGTCC 1369
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1347 AGCAAGAGTGTAGTGATTGATCTTCCCATGGAGGTTGAGATCGGGTTAGGAGGAGAGTCT 1406
Query 1370 AAGTGGGAGTAAACTG 1385
||||||||||||||||
Sbjct 1407 AAGTGGGAGTAAACTG 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68222540655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5