BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489095
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22390.1 | Symbols: | Protein of unknown function (DUF3049)... 1177 0.0
> AT5G22390.1 | Symbols: | Protein of unknown function (DUF3049)
| chr5:7418116-7419249 REVERSE LENGTH=1134
Length=1134
Score = 1177 bits (637), Expect = 0.0
Identities = 809/885 (91%), Gaps = 39/885 (4%)
Strand=Plus/Plus
Query 1 ATGGCAGCCTATGGAAGCTTTCACCGAATATTCGATAACCCAAGACAAGACAACTCTCCA 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ATGGCAGCTTATGGAAGCTTTCACCGAATATTCGATAACCCAAGACAAGACAACTCTCCA 318
Query 61 AAGTCTTTTCTTGATACTCTCTCCTCTTCCTCACCTTGGAACCCAAGCAAAGGCCTCCAC 120
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 319 AAGTCGTTTCTTGATACTCTCTCCTCTTCTTCACCTTGGAACCCAAGCAAAGGCCTCCAC 378
Query 121 GTCACCACCCACCACGACGAAACGCCGCCGCCGTTTACAGAGATATTCGGTGAGCTTCAT 180
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 379 GTCACAACCCACCACGACGAAACGCCACCGCCGTTTACAGAGATATTCGGTGAGCTTCAT 438
Query 181 TTCAGAGAATCATCCCATTCTTCTTACGAGAAAACCTCAGCGGAGAACAGCAGTCTCCAA 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 439 TTCAGAGAATCATCCCATTCTTCTTACGAGAAAACCTCAGCCGAGAACAGCAGTCTTCAG 498
Query 241 CTGTGTACGGAAGGTTTAGGGTCAGAGAGTTATTACGACTTGGAAGATGAAAAAGTCAAC 300
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 499 CTGTGTACGGAAGGTCTAGGGTCAGAGAGTTATTACGGCTTGGAAGATGAAAAAGTCAAC 558
Query 301 GTTAATGTCAACGGTAACGGGGAAGATCATGATGAAGAGATTATTGAAGTGAAGGGTAAA 360
| | ||| | | |||| || ||| ||||| || || |||||||||||||||
Sbjct 559 GGTGATG-----G-TGACGGTGATGAT---GATGA-GA--TT---GAAGTGAAGGGTAAA 603
Query 361 GATAACGGAAGCAACGATGAGGAG---TGGGAACCACGAAGGAAGGAACGGAAAGAGTAT 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 604 GATAACGGAAGCAACGATGAGGAGGAGTGGGAACCACGAAGGAAGGAACGGAAAGAGTAT 663
Query 418 CCTCCGGCGATGACTAGGATGAGCTTCAAGACGTATAGAAAAGAAGGGAGGCTTGTGTTG 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 664 CCTCCGGCGATGACTAGGATGAGCTTCAAGACTTATAGAAAAGAAGGGAGGCTTGTGTTG 723
Query 478 GAAGAAGTTAGGATTCCGAGGAGAGAGTTTCTTCGAGCAAGCCGCGAAGATGGTCGACTC 537
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 724 GAAGAAGTTAGGATTCCAAGGAGAGAGTTCCTTCGTGCAAGCCGCGAAGATGGTCGACTC 783
Query 538 AGGTTGAAGTTGGTTCAACCCGAGGACGACCATGACGAAGAGGAAGAAAATGAGAAAGAT 597
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 784 AGGTTGAAGTTGGTTCAACCTGAGGACGACCATGACGAAGAGGAAGAGAATGAGAAAGAT 843
Query 598 AAACATG---ACGATGATGAATAATTTT-T---T-------G--T---ATCCATTGTTCC 638
||||||| |||| ||||||||||||| | | | | |||| |||||||
Sbjct 844 AAACATGTCGACGAGGATGAATAATTTTGTGAATTTTCATAGAATTGTATCCGTTGTTCC 903
Query 639 GCAAGAAAAATGTCAATTATGAATGTAAAAGCTTCTTTATGCGGGTTTTGTAGTTCAATC 698
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 904 GCAAGATAAATGTCAATTATGAATGTAAAAGCTTCTTTATGCGGGTTTTGTAGTTGAATC 963
Query 699 AAGCTTTTGTCGCTTAACCATTCTGCCGAGtttttttttttCATTTACAACTTCTCTACC 758
|||| ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||
Sbjct 964 TAGCTCTTGTCGCTTAATCATTCTGCCGAGTTCTTTTTTT-CATTTACAACTTCTCTACC 1022
Query 759 AAACTATCAATGGTCAATGGCAAGGAAATTAATTTA-TTTTGAGTAAGATATATTTGGTT 817
| |||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct 1023 ATTCTATCAATGGGCAATGGCAAGGAAACTAATTTAGTTTTGAGTAAGATATAATTGGTT 1082
Query 818 TTGTTTAAAAAATTTGGAAAAATCTCTTTAAATATTAAAAGCCAA 862
||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 1083 TTGTTTAAAGATTTTGGAAAAACCTCTTTAAATATTAAAAGCCAA 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5