BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489097 Length=1056 Score E Sequences producing significant alignments: (Bits) Value AT5G22410.1 | Symbols: RHS18 | root hair specific 18 | chr5:742... 1376 0.0 > AT5G22410.1 | Symbols: RHS18 | root hair specific 18 | chr5:7426314-7427964 FORWARD LENGTH=1271 Length=1271 Score = 1376 bits (745), Expect = 0.0 Identities = 963/1067 (90%), Gaps = 19/1067 (2%) Strand=Plus/Plus Query 1 GAATTCATATAGATATTTCAACCAAAAATGGCCGTGAAGATCTCAACCATAT-CAGTATT 59 ||||||||||||| |||||||| ||||||||||||||||||||| ||||| | |||||| Sbjct 7 GAATTCATATAGAAATTTCAACTAAAAATGGCCGTGAAGATCTCGACCAT-TGAAGTATT 65 Query 60 GATCCTTTCCCTTGCTCTACTTAGCTTCGGCCATTGTTGTTATGGCCAGCTTCGAATCGG 119 |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 66 GATCCTCTCCCTTGCTCTACTTAGCTTCGGCCATGGTTGTTATGGCCAGCTTCGACTCGG 125 Query 120 ATTCTACAGTAC-AAAGTGCCCAAATGTCGAAAACATTGTATCTAAAGTTGTTGGAGAGG 178 |||||||||| | ||| |||| ||| ||||||||||| |||||||||||||||||||||| Sbjct 126 ATTCTACAGT-CAAAATTGCCAAAACGTCGAAAACATCGTATCTAAAGTTGTTGGAGAGG 184 Query 179 CATTCATCAAGGGTTCGTCCATTGCACCCGCAATGATCCGCCTTTATTTTCACGATTGTT 238 |||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 185 CATTCATCAAGGATTCATCGATTGCACCCGCAATGATCCGCCTTTATTTTCACGATTGTT 244 Query 239 TTAGCAACGGATGTGATGCATCGCTTCTTCTAGACGGTGCGAGCAGTGAGAAAAAGGCGT 298 |||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||| Sbjct 245 TTAGCAACGGGTGTGATGCATCGCTTCTTCTAGATGGTTCGAACAGTGAGAAAAAGGCGT 304 Query 299 CGCCAAATCTAAGTGTACGAGGATACGAATTGATAGATGACATTAAATCTGCGGTCGAGC 358 | ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| Sbjct 305 CACCAAATCTAAGTGTACGCGGATACGAAGTGATAGATGACATTAAGTCTGCGGTCGAAA 364 Query 359 AAGAATGCGATAGGGTCGTTTCTTGTGCTGATATCATAGCTCTTGCGACTAGAGATCTTG 418 ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 365 AAGAATGTGACAGGGTCGTTTCTTGTGCTGATATCATAGCTCTCGCGACTAGAGATCTTG 424 Query 419 TTACTCTTGCAAGCGGAGGGAAAACACGATATGAGATACCAACAGGACGATTAGACGGCA 478 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 425 TTACTCTTGCAAGCGGAGGGAAAACACGATATGAGATACCAACAGGACGATTGGACGGTA 484 Query 479 AAGTCTCTTTGGCTTTGCTCGTGGATTTACCGTCTCCTCGGATGACCGTCTCGCAAACTG 538 || |||||| ||||||||| || ||||| |||||||| |||||||||| || |||||| Sbjct 485 AAATCTCTTCGGCTTTGCTTGTCGATTTGCCGTCTCCAAAGATGACCGTCGCGGAAACTG 544 Query 539 CTGCGAAATTTGCTGACAGGAAACTAAGCCTTACCGATATGGTTCTACTTCTTGGTGGAC 598 |||| ||||||| | | |||||||| ||||||| |||||||||||||||||||||||||| Sbjct 545 CTGCTAAATTTGATCAGAGGAAACTTAGCCTTAACGATATGGTTCTACTTCTTGGTGGAC 604 Query 599 ATACGATCGGAGTTG-CACATTGTTCGTTCGTTATGGACCGGCTATATAA-TTTCCAAAA 656 ||||||| ||||| | |||||||||| ||| |||||||| | ||||||| |||| |||| Sbjct 605 ATACGATTGGAGT-GACACATTGTTCCTTCATTATGGACAGATTATATAACTTTC-AAAA 662 Query 657 TACGCAACAA-CCTGATCCATCCATGGATCCTAAATTGGTCCAAGAACTAAGACTC-AAA 714 |||||| || ||||||||||| |||||||||||||||||| |||||||||| | | ||| Sbjct 663 CACGCAA-AAGCCTGATCCATCTATGGATCCTAAATTGGTCGAAGAACTAAG-CGCCAAA 720 Query 715 TGCCCTAAG-GATTCGTCAATTGATGGCATCATTAATCTGGATCAAAATTTTACGAGTTC 773 ||||||||| | ||| |||| ||||||||||||| ||||||||||||| ||| || || Sbjct 721 TGCCCTAAGAG-TTCATCAACCGATGGCATCATTAGTCTGGATCAAAATGCTACTAGCTC 779 Query 774 GAATACTATGGATGTATCTTTCTATAAACAGATAAATTTTCA-CCGCGGAATCCTTCATA 832 |||||||||||||||||||||||| ||| ||||||| || | ||| ||| ||||||||| Sbjct 780 GAATACTATGGATGTATCTTTCTACAAAGAGATAAAAGTT-AGCCGTGGAGTCCTTCATA 838 Query 833 TCGATCAACAACTTGCCATCGATGGGATGACGAGTAAGATGGTGACGGATATAGCCAATG 892 |||||||| ||||||||||||| | |||| |||||||||||||||||||||||||| | Sbjct 839 TCGATCAAAAACTTGCCATCGACGATTTGACAAGTAAGATGGTGACGGATATAGCCAACG 898 Query 893 GTAACGACTTCTTGGCTAGGTTTGGTCAGGCAATGGTGAATTTGGGATCGGTGAGACTTA 952 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 899 GTAACGATTTCTTGGTTAGGTTTGGTCAGGCAATGGTGAATTTGGGATCGGTGAGAGTTA 958 Query 953 TTAGTAAGGCCAAAGACGGGGAGATAAGAAAATCATGTCGTTCT--T-GCAACAATCCAT 1009 |||||||| ||||||||||||||||||||| ||||||||||||| | |||||||||||| Sbjct 959 TTAGTAAGCCCAAAGACGGGGAGATAAGAAGATCATGTCGTTCTACTTGCAACAATCCAT 1018 Query 1010 CATGCGTATAAACAGTTGAATAAAATTACGCGCTGttttttttGTTT 1056 ||||||||||||||||||||||| ||||||||| | |||||||||| Sbjct 1019 TATGCGTATAAACAGTTGAATAAAGTTACGCGCTATATTTTTTGTTT 1065 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51791405557 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5