BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489097
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22410.1 | Symbols: RHS18 | root hair specific 18 | chr5:742... 1376 0.0
> AT5G22410.1 | Symbols: RHS18 | root hair specific 18 | chr5:7426314-7427964
FORWARD LENGTH=1271
Length=1271
Score = 1376 bits (745), Expect = 0.0
Identities = 963/1067 (90%), Gaps = 19/1067 (2%)
Strand=Plus/Plus
Query 1 GAATTCATATAGATATTTCAACCAAAAATGGCCGTGAAGATCTCAACCATAT-CAGTATT 59
||||||||||||| |||||||| ||||||||||||||||||||| ||||| | ||||||
Sbjct 7 GAATTCATATAGAAATTTCAACTAAAAATGGCCGTGAAGATCTCGACCAT-TGAAGTATT 65
Query 60 GATCCTTTCCCTTGCTCTACTTAGCTTCGGCCATTGTTGTTATGGCCAGCTTCGAATCGG 119
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 66 GATCCTCTCCCTTGCTCTACTTAGCTTCGGCCATGGTTGTTATGGCCAGCTTCGACTCGG 125
Query 120 ATTCTACAGTAC-AAAGTGCCCAAATGTCGAAAACATTGTATCTAAAGTTGTTGGAGAGG 178
|||||||||| | ||| |||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 126 ATTCTACAGT-CAAAATTGCCAAAACGTCGAAAACATCGTATCTAAAGTTGTTGGAGAGG 184
Query 179 CATTCATCAAGGGTTCGTCCATTGCACCCGCAATGATCCGCCTTTATTTTCACGATTGTT 238
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CATTCATCAAGGATTCATCGATTGCACCCGCAATGATCCGCCTTTATTTTCACGATTGTT 244
Query 239 TTAGCAACGGATGTGATGCATCGCTTCTTCTAGACGGTGCGAGCAGTGAGAAAAAGGCGT 298
|||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||
Sbjct 245 TTAGCAACGGGTGTGATGCATCGCTTCTTCTAGATGGTTCGAACAGTGAGAAAAAGGCGT 304
Query 299 CGCCAAATCTAAGTGTACGAGGATACGAATTGATAGATGACATTAAATCTGCGGTCGAGC 358
| ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 305 CACCAAATCTAAGTGTACGCGGATACGAAGTGATAGATGACATTAAGTCTGCGGTCGAAA 364
Query 359 AAGAATGCGATAGGGTCGTTTCTTGTGCTGATATCATAGCTCTTGCGACTAGAGATCTTG 418
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 365 AAGAATGTGACAGGGTCGTTTCTTGTGCTGATATCATAGCTCTCGCGACTAGAGATCTTG 424
Query 419 TTACTCTTGCAAGCGGAGGGAAAACACGATATGAGATACCAACAGGACGATTAGACGGCA 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 425 TTACTCTTGCAAGCGGAGGGAAAACACGATATGAGATACCAACAGGACGATTGGACGGTA 484
Query 479 AAGTCTCTTTGGCTTTGCTCGTGGATTTACCGTCTCCTCGGATGACCGTCTCGCAAACTG 538
|| |||||| ||||||||| || ||||| |||||||| |||||||||| || ||||||
Sbjct 485 AAATCTCTTCGGCTTTGCTTGTCGATTTGCCGTCTCCAAAGATGACCGTCGCGGAAACTG 544
Query 539 CTGCGAAATTTGCTGACAGGAAACTAAGCCTTACCGATATGGTTCTACTTCTTGGTGGAC 598
|||| ||||||| | | |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 545 CTGCTAAATTTGATCAGAGGAAACTTAGCCTTAACGATATGGTTCTACTTCTTGGTGGAC 604
Query 599 ATACGATCGGAGTTG-CACATTGTTCGTTCGTTATGGACCGGCTATATAA-TTTCCAAAA 656
||||||| ||||| | |||||||||| ||| |||||||| | ||||||| |||| ||||
Sbjct 605 ATACGATTGGAGT-GACACATTGTTCCTTCATTATGGACAGATTATATAACTTTC-AAAA 662
Query 657 TACGCAACAA-CCTGATCCATCCATGGATCCTAAATTGGTCCAAGAACTAAGACTC-AAA 714
|||||| || ||||||||||| |||||||||||||||||| |||||||||| | | |||
Sbjct 663 CACGCAA-AAGCCTGATCCATCTATGGATCCTAAATTGGTCGAAGAACTAAG-CGCCAAA 720
Query 715 TGCCCTAAG-GATTCGTCAATTGATGGCATCATTAATCTGGATCAAAATTTTACGAGTTC 773
||||||||| | ||| |||| ||||||||||||| ||||||||||||| ||| || ||
Sbjct 721 TGCCCTAAGAG-TTCATCAACCGATGGCATCATTAGTCTGGATCAAAATGCTACTAGCTC 779
Query 774 GAATACTATGGATGTATCTTTCTATAAACAGATAAATTTTCA-CCGCGGAATCCTTCATA 832
|||||||||||||||||||||||| ||| ||||||| || | ||| ||| |||||||||
Sbjct 780 GAATACTATGGATGTATCTTTCTACAAAGAGATAAAAGTT-AGCCGTGGAGTCCTTCATA 838
Query 833 TCGATCAACAACTTGCCATCGATGGGATGACGAGTAAGATGGTGACGGATATAGCCAATG 892
|||||||| ||||||||||||| | |||| |||||||||||||||||||||||||| |
Sbjct 839 TCGATCAAAAACTTGCCATCGACGATTTGACAAGTAAGATGGTGACGGATATAGCCAACG 898
Query 893 GTAACGACTTCTTGGCTAGGTTTGGTCAGGCAATGGTGAATTTGGGATCGGTGAGACTTA 952
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 899 GTAACGATTTCTTGGTTAGGTTTGGTCAGGCAATGGTGAATTTGGGATCGGTGAGAGTTA 958
Query 953 TTAGTAAGGCCAAAGACGGGGAGATAAGAAAATCATGTCGTTCT--T-GCAACAATCCAT 1009
|||||||| ||||||||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct 959 TTAGTAAGCCCAAAGACGGGGAGATAAGAAGATCATGTCGTTCTACTTGCAACAATCCAT 1018
Query 1010 CATGCGTATAAACAGTTGAATAAAATTACGCGCTGttttttttGTTT 1056
||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 1019 TATGCGTATAAACAGTTGAATAAAGTTACGCGCTATATTTTTTGTTT 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5