BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489110
Length=2108
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22510.1 | Symbols: INV-E, At-A/N-InvE | alkaline/neutral in... 2964 0.0
> AT5G22510.1 | Symbols: INV-E, At-A/N-InvE | alkaline/neutral
invertase | chr5:7474810-7477941 REVERSE LENGTH=2191
Length=2191
Score = 2964 bits (1605), Expect = 0.0
Identities = 1930/2080 (93%), Gaps = 50/2080 (2%)
Strand=Plus/Plus
Query 1 TGTTTCGAAAACAAGGGTTTTTGGACCA---GTCACTTTACCGGATTTTGGTTCT-GT-C 55
|||||||||| ||||||||||||||||| |||||||||||||||||| ||| | || |
Sbjct 1 TGTTTCGAAAGCAAGGGTTTTTGGACCAGTCGTCACTTTACCGGATTTTTGTTTTGGTGC 60
Query 56 TCTCCAATCATCTGATTC-AAA-GTCTCTCTCTC-G-CAAGCTGAATCTGGATCATCAAA 111
|| | | | |||||||| ||| |||||||||| | ||||||||||||||||||||||
Sbjct 61 TCGACGA-C-TCTGATTCGAAATCTCTCTCTCTCGGAAAAGCTGAATCTGGATCATCAAA 118
Query 112 GTATTATTTTAAAGTTTGATCATTTCTTCTCTGAGTATATAGGGTAGTACTCAAAATGGC 171
|||| ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 119 GTATCATTTTAAAGTTTGATCATTTCTTCTTTGGGTATATAGGGTAGTATTCAAAATGGC 178
Query 172 AGCTTCAGAAACAGTTCTACGTGTTCCATTGGGATCTTTATCTCAATCTTGTTATCTAGC 231
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 179 AGCTTCAGAAACAGTTCTACGTGTTCCATTAGGATCTGTATCTCAATCTTGCTATCTAGC 238
Query 232 TTCTTTCTTTGTTAACTCCACTCCAAACCTCTCGTTTAAACCCGTTAGTATAAACAGAAA 291
||| |||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 239 TTCCTTCTTTGTTAACTCAACACCAAACCTCTCGTTTAAACCCGTTAGTAGAAACAGAAA 298
Query 292 GGGCGTCCGGTGTACAAGCTCGCACGAGTTCTCAACCGTATCAAACTCCGCGGTGCGAGG 351
| |||||||||||||| |||||| ||| |||||| |||| | || |
Sbjct 299 GACCGTCCGGTGTACAAACTCGCATGAGGTCTCAAGCGTA-CCAA------------A-- 343
Query 352 AAATTCATTTCATAGTTCAAACTGT-TCTTTGAAAGGTAAAAAGTTTG--T------T-T 401
| ||||||||||||||||||||| | | |||||||||||||||||||| | | |
Sbjct 344 ACATTCATTTCATAGTTCAAACTCTGT-TTTGAAAGGTAAAAAGTTTGTTTCCACGATAT 402
Query 402 GCAAATGCCAAAAACATGATGTTGAGGAGAGCATCAGATCCACGGTACTTCC-T-T--C- 456
||||||||||||||||||||||||||||||| || ||||| ||| ||||||| | | |
Sbjct 403 GCAAATGCCAAAAACATGATGTTGAGGAGAGTATTAGATCAACGTTACTTCCATCTGACG 462
Query 457 ---TGA-C-G-G-TTTGAAAAGCGACTTGGATGAAATGCCTCTACCGGTAAATGGAAGTC 509
||| | | | |||||||| ||||| |||||||||||| |||| || |||||||||
Sbjct 463 GTTTGAGCAGTGAATTGAAAAGTGACTTAGATGAAATGCCTTTACCTGTTAATGGAAGTG 522
Query 510 TTTCATCTAATGGTAATGCACAATCAGTTGGAACAAAGTCTATTGAGGATGAAGCTTGGG 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TTTCATCTAATGGTAATGCACAATCAGTTGGAACAAAGTCTATTGAGGATGAAGCTTGGG 582
Query 570 ATCTATTGAGGCAGTCTGTTGTTTTCTATTGTGGCAGTCCTATTGGAACCATTGCTGCTA 629
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 583 ATCTGTTGAGGCAGTCTGTTGTTTTCTATTGTGGAAGTCCTATTGGAACTATTGCTGCTA 642
Query 630 ATGACCCGAGCTCTACTAGTGTTCTGAATTATGATCAGGTCTTCATTCGTGATTTCATAC 689
|||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 643 ATGATCCGAACTCTACTAGTGTTTTGAATTATGATCAGGTCTTTATTCGTGATTTCATAC 702
Query 690 CCTCGGGGATTGCCTTTCTTCTTAAAGGAGAGTATGATATTGTTCGCAATTTCATCCTTT 749
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CTTCGGGGATCGCCTTTCTTCTTAAAGGAGAGTATGATATTGTTCGCAATTTCATCCTTT 762
Query 750 ACACCCTCCAGTTACAGAGTTGGGAGAAAACCATGGATTGCCATAGCCCAGGTCAAGGTT 809
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 763 ACACTCTCCAGTTACAGAGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTT 822
Query 810 TGATGCCTTGTAGTTTCAAGGTGAAAACTGTTCCTCTTGATGGCGATGATTCAATGACCG 869
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 823 TGATGCCTTGTAGTTTCAAGGTGAAAACTGTTCCTCTCGATGGCGATGATTCAATGACCG 882
Query 870 AAGAAGTGTTAGATCCTGATTTTGGGGAAGCAGCTATTGGACGTGTTGCCCCGGTAGATT 929
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 883 AAGAAGTGTTAGATCCTGATTTTGGTGAAGCAGCTATTGGACGTGTTGCCCCGGTTGATT 942
Query 930 CTGGTTTGTGGTGGATTATATTGTTAAGAGCATATGGAAAATGCACGGGTGATCTTTCAG 989
|||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
Sbjct 943 CTGGCTTGTGGTGGATTATTTTGTTGAGAGCATATGGAAAATGCACTGGTGATCTTTCCG 1002
Query 990 TGCAGGAAAGAGTTGATGTGCAGACTGGAATCAAGATGATCTTGAAGCTGTGTCTCGCTG 1049
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1003 TGCAGGAAAGAGTTGATGTGCAGACTGGAATCAAGATGATCTTAAAGCTGTGTCTCGCTG 1062
Query 1050 ATGGTTTCGATATGTTCCCTACTTTATTAGTCACTGATGGGTCCTGCATGATAGACCGTC 1109
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1063 ATGGTTTCGATATGTTTCCTACTTTGTTAGTTACTGATGGGTCCTGCATGATAGACCGTC 1122
Query 1110 GAATGGGAATCCATGGTCATCCCCTGGAGATTCAGGCACTCTTTTATTCGGCTTTGGTCT 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 GAATGGGAATCCATGGTCATCCCCTGGAGATTCAGGCACTCTTTTATTCGGCTTTGGTCT 1182
Query 1170 GTGCACGTGAGATGCTTACGCCAGAGGATGGGTCAGATGATCTAATCCGAGCTCTCAACA 1229
| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1183 GCGCTCGTGAGATGCTTACGCCAGAGGACGGGTCAGCTGATCTAATCCGAGCTCTCAACA 1242
Query 1230 ATCGTCTTGTTGCATTGAATTTCCACATCAGGGAATACTACTGGTTGGACCTGaaaaaaa 1289
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1243 ATCGTCTTGTTGCTTTAAATTTCCACATCAGGGAATACTACTGGTTGGACCTGAAAAAGA 1302
Query 1290 TTAACGAAATATACCGTTACCAGACGGAAGAATACTCTTACGATGCGGTTAATAAATTCA 1349
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1303 TTAATGAAATATACCGTTACCAGACCGAGGAATACTCTTACGATGCGGTTAATAAATTCA 1362
Query 1350 ACATATATCCAGATCAGATCCCTTCATGGTTAGTGGACTTTATGCCCAACAGAGGAGGGT 1409
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1363 ACATATATCCAGATCAGATCCCTTCATGGTTAGTGGACTTTATGCCGAACAGAGGAGGAT 1422
Query 1410 ATTTGATTGGAAACCTTCAGCCCGCCCACATGGATTTCAGATTCTTTACTCTGGGGAACC 1469
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1423 ATTTGATTGGAAACCTTCAGCCTGCTCACATGGATTTCAGATTCTTTACTCTGGGGAACC 1482
Query 1470 TTTGGTCTATAGTGAGCAGTTTGGCTACAAATGATCAGTCACATGCAATTCTTGATCTCA 1529
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct 1483 TTTGGTCTATAGTGAGCAGTTTGGCTTCAAATGATCAATCACATGCAATTCTTGATTTCA 1542
Query 1530 TTGAAGCCAAATGGGCAGAGCTTGTAGCAGACATGCCGCTCAAGATCTGTTACCCTGCTA 1589
| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 1543 TCGAAGCCAAATGGGCAGAACTTGTAGCAGACATGCCACTTAAGATCTGTTACCCTGCTA 1602
Query 1590 TGGAAGGTGAAGAATGGCGAATTATAACCGGAAGTGATCCAAAGAACACTCCTTGGTCTT 1649
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1603 TGGAAGGTGAAGAATGGCGAATTATAACCGGAAGTGATCCAAAGAATACTCCTTGGTCTT 1662
Query 1650 ATCACAATGGAGGTGCATGGCCAACTCTGTTATGGCAGCTGACAGTAGCAAGCATCAAAA 1709
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1663 ATCACAATGGAGGTGCATGGCCAACTCTGCTATGGCAGCTGACAGTTGCAAGCATCAAAA 1722
Query 1710 TGGGTAGACCAGAAATTGCAGAAAAGGCGGTTGAGTTAGCCGAGAGACGGATTTCCTTAG 1769
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 TGGGTAGACCAGAGATTGCAGAAAAGGCGGTTGAGTTAGCCGAGAGACGGATTTCCTTAG 1782
Query 1770 ACAAATGGCCTGAGTACTACGATACCAAAAGAGCAAGATTTATCGGTAAACAGGCACGGC 1829
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1783 ACAAATGGCCCGAGTACTACGATACCAAAAGAGCAAGATTCATCGGTAAACAGGCACGGC 1842
Query 1830 TTTACCAGACTTGGTCCATTGCAGGTTACCTCGTGGCCAAGCTCCTTTTGGCAAATCCAG 1889
| ||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||
Sbjct 1843 TATACCAGACTTGGTCCATCGCAGGTTACCTAGTGGCCAAGCTCCTCTTAGCAAATCCAG 1902
Query 1890 CTGCAGCAAAATTCCTCACTAGTGAAGAGGATTCAGATTTGAGAAACGCATTCTCTTGCA 1949
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1903 CTGCAGCAAAGTTCCTCACTAGTGAAGAGGATTCGGATTTGAGAAACGCATTCTCTTGCA 1962
Query 1950 TGTTCAGCGCTAACCCGAGAAGGACAAGAGGACCCAAAAAGGCTCAACAACCATTTATTG 2009
|| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1963 TGCTCAGCGCTAACCCGAGGAGGACAAGAGGACCCAAAAAAGCTCAACAACCATTTATTG 2022
Query 2010 TATGAGAAGCTCAGACTTATTT-TTTCAAAGTGAGCCATG 2048
||||||| |||||||||||||| |||||||||||||||||
Sbjct 2023 TATGAGAGGCTCAGACTTATTTATTTCAAAGTGAGCCATG 2062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104517534690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5