BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489113
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22550.2 | Symbols: | Plant protein of unknown function (DU... 2128 0.0
> AT5G22550.2 | Symbols: | Plant protein of unknown function (DUF247)
| chr5:7483873-7485458 REVERSE LENGTH=1586
Length=1586
Score = 2128 bits (1152), Expect = 0.0
Identities = 1400/1519 (92%), Gaps = 20/1519 (1%)
Strand=Plus/Plus
Query 1 TAACAAGAGAGCCATGGATCCTCCCAGCCAAGCCAGTGAAGAGAGTGCCACGATCCCGGA 60
||| ||||||||||||||||||||||||||||| | | |||||||||||||||||| ||
Sbjct 13 TAAGAAGAGAGCCATGGATCCTCCCAGCCAAGCAAACGGAGAGAGTGCCACGATCCCAGA 72
Query 61 CGAAAACGAAGAAGAAGCTTATTTGCTCTTAGATAAAGTGATCCCACCAGTCCATCTAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 73 CGAAAACGAAGAAGAAGCTTATTTGCTCTTAGATAAAGTGATCCCACCAGTCCATCTCAA 132
Query 121 GGAATCAGCAGGTGATAGATCTTGTTGCATCTATAGAATCCCTCACACTCTCGAGCGAGT 180
|||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||
Sbjct 133 GGAATCAGCAGGTGATAGATTTTGTTGCATCTACAGAATCCCTCACACTCTCAAGCAAGT 192
Query 181 CAACGACAAAGCTTATGCACCCAAGATCGTTTCAATAGGCCCTTATCACCATTCAAGTGA 240
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 193 CAACGACAAAGCTTATGCACCTAAGATCGTTTCAATAGGTCCTTATCACCATTCGAGTGA 252
Query 241 TAAACAACATCTCAAGATGATAGAGGAGCATAAAAAACGTTATTTGGAGATTTTCGTGTC 300
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 253 TAAACAACATCTCAAGATGATAGAGGAGCACAAGAAACGTTATTTGGAGATGTTCGTGTC 312
Query 301 AAAGACTAAGGACAATGGTGTAAATTTAAGTCACTTAGTCGATGTCGTCTCAGGATTGGA 360
|||||||||||| |||||||| |||||| ||||||||||||| | ||||| ||||||||
Sbjct 313 AAAGACTAAGGAAAATGGTGTGTATTTAATTCACTTAGTCGATCTAGTCTCGGGATTGGA 372
Query 361 ACAGAAGATAAGAGACTCCTACTCTGAGAATCTTGAATTTAGTCGACAAAAGCTTATCAA 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 373 ACAGAAGATAAGAGACTCCTACTCTGAGAATCTTGAATTTAGTCAACAAAAGCTGATCAA 432
Query 421 GGTGATGATTCTTGATGGTTGTTTCATTCTTATGCTGTTCCTTGTGGTTTCACAAAAGAT 480
|||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 433 AGTGATGCTTCTTGATGGTTGTTTCATTCTTATGTTGTTCCTAGTGGTTTCACAAAAGAT 492
Query 481 TGAGTACACAAATTTCAAAGACCCAATTTTCAATCTGCGATGGATATTGCCAACACTTCG 540
||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 493 TGAATACACAAATCTCAAAGACCCAATTTTCAAGCTACGATGGATATTGCCAACACTTCG 552
Query 541 AAGCGACCTTCTTCTTCTCGAAAACCAGCTTCCTCTCTTTCTTCTTGAAGTTCTTTTAGA 600
|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 553 AAGCGACCTTCTTCTTCTCGAAAACCAGGTTCCTCTCTTTCTACTTAAAGTTCTTTTAGA 612
Query 601 GACATCAAAGTTAGCTCCATCCACTAGCTTAAACATGTTGGCCTTCAAATTCTTCAACTA 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 613 GACATCAAAGTTAGCTCCATCCACTAGCTTGAACATGTTGGCCTTCAAATTCTTCGACTA 672
Query 661 CTCAATaaaaaaaaCAGATGATTTCTGGAAGAAGCACAACAATCTTCGAGCAAAACATCT 720
||| ||||||||| |||| | |||||| |||| ||||||||||||||||||||||||||
Sbjct 673 CTCCATAAAAAAACCAGAAGGGTTCTGGGAGAAACACAACAATCTTCGAGCAAAACATCT 732
Query 721 TCTTGATCTCATTCGTAAGACTTTCAAACCCGTCCCGCCTCCACCAACAATTCCAAGGCA 780
||||||||| |||||||||||||||| ||||| |||||||||| |||| | || |||||
Sbjct 733 TCTTGATCTTATTCGTAAGACTTTCATACCCGCCCCGCCTCCATCAACCACCCCCAGGCA 792
Query 781 ATGTTGTATCAATATTTTCAG-GG----A---AA-ATTCAAGAACCGAGACATCTAAAAA 831
|||||||||||||||||||| || | || |||||||||| |||||||| |||||
Sbjct 793 ATGTTGTATCAATATTTTCAATGGTCCTAGGGAATATTCAAGAACAGAGACATCCAAAAA 852
Query 832 TACTTGTCTCGGTAAGATAAGTTGCTCAAAGGAGATAACTGGAGCGCAAACATCATCGcc 891
|| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 853 TATTTGTCTCGGTAAGATAAGTTGTTCAAAGGAGATAACGGGAGCGCAAACATCATCGCC 912
Query 892 tcctcttcctcctcctcctcGACCTTTTCTTGGGCTAATTGTGTCAGCCAGAAAACTTCA 951
||||| | |||||||| ||| |||||||||||||||||||| ||||| |||||||| |
Sbjct 913 TCCTC--C-TCCTCCTCGTCGTCCTTTTCTTGGGCTAATTGTCTCAGCAAGAAAACTACG 969
Query 952 ACTTCGGGGAATAAAATTCAAGCGGAAGGAGAATGTAGAGACACCGTTAGACATCAGTTT 1011
|||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||
Sbjct 970 ACTTCGGGGAATAAAATTTATGCGGAAGGAGAATGTTGAGACACCGTTAGACATAAGTTT 1029
Query 1012 CAAGAGCGGTATTC-TTGAAGTACCACTACTTGTCTTTGATGACTTTATCAGCACTCTAC 1070
|||||| ||| || ||||| |||||||||| || ||||| ||||||||||||| |||
Sbjct 1030 CAAGAGTGGT-TTGGTTGAAATACCACTACTAGTGTTTGACGACTTTATCAGCAATCTTT 1088
Query 1071 TGATCAACTGTGTTGCCTTTGAGCAGTTTAATATGAGCTGCTCCACTGAGATTACTAGCT 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TGATCAACTGTGTTGCCTTTGAGCAGTTTAATATGAGCTGCTCCACTGAGATTACTAGCT 1148
Query 1131 ATGTAACTTTCATGGGTTGCTTGATAAACACAGAAGAGGATGCGACCTTCTTAATCGAGA 1190
||||| |||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 1149 TTGTAATTTTCATGGGTTGCTTGATCAACACAGAAGACGATGCGACTTTCTTAATCGAGA 1208
Query 1191 AAGGGATCTTAGAGAACTATTTCGGAACGGGTGAACAAGTTTCTTTATTCTTCAAGAACA 1250
|||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||||
Sbjct 1209 AAGGGATCTTAGAGAACTATTTTGGAACGGGTGAAGAAGTTTCTTTATTTTTTAAGAACA 1268
Query 1251 TTGGGAAAGACATCTCATTCAGCATATCCAAGAGTTTTCTA-TCAAAAGTGTTCGAGGGA 1309
|||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1269 TTGGAAAAGACATCTCATTCAGCATATCCAAGAGTTT-CTTGTCAAATGTGTTCGAGGGA 1327
Query 1310 GTGAACGAGTACACTTCACAAGGATACCACGTACAATGGGCAGGGTTCAAGTACACACAT 1369
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1328 GTGAATGAGTACACTTCACAAGGATACCACGTACACTGGGCAGGGTTCAAGTACACACAT 1387
Query 1370 TTCAACACTCCATGGACATTTTTATCATCTTGTGCTGCTTTGATGCTTCTTCTCCTTACC 1429
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1388 TTCAACACTCCATGGACATTTCTATCATCTTGTGCTGCTTTGGTGCTTCTTCTCCTTACC 1447
Query 1430 ATTTTCCAAGCCTTCTTTGCAGCTTATGCTTACTTTCGTCCTCCCAAAAACAGTT-AACT 1488
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1448 ATTTTCCAAGCCTTCTTTGCAGCTTATGCTTACTTTCGTCCTCCCAAAAACAATTGAA-T 1506
Query 1489 -GTAAGGGCCTCCTTTATC 1506
||| | | || |||||||
Sbjct 1507 AGTA-GTGTCTTCTTTATC 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74447408235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5