BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489115
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22560.1 | Symbols: | Plant protein of unknown function (DU... 2414 0.0
AT5G22550.2 | Symbols: | Plant protein of unknown function (DU... 398 1e-109
AT3G44710.1 | Symbols: | Plant protein of unknown function (DU... 54.7 3e-06
> AT5G22560.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr5:7491356-7493176 REVERSE LENGTH=1821
Length=1821
Score = 2414 bits (1307), Expect = 0.0
Identities = 1538/1645 (93%), Gaps = 34/1645 (2%)
Strand=Plus/Plus
Query 1 TTTTCTTGTTaaaagaaaaaagaacaagaaaaaT-CAAGAACAAGATCAGAGCCATGTAT 59
||||||||| || |||||||||| |||||||||| |||| || |||| ||||||||||||
Sbjct 35 TTTTCTTGTCAAGAGAAAAAAGATCAAGAAAAATACAAGTACTAGATGAGAGCCATGTAT 94
Query 60 CTTCCCAAGCAACCA-ACAGGAGGAAGCACAACAATCTCAGGGGTAGATGATTGCATCGT 118
|||||||||||| || || ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 95 CTTCCCAAGCAA-CACACTGGAGGAAGCACAACAATTTCAGGGGAAGATGATTGCATCGT 153
Query 119 AGAAATCTC-AAGGGCAGATGAAGATTCCAAAATACTTCTGAGAAATTCAGCAGCTCACC 177
| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 ACAAATC-CGAAGGGTAGATGAAGATTCCAAAATACTTCTGAGAAATTCAGCAGCTCACC 212
Query 178 AATCTTGTTGCATCTTTAGAATCCCTCACACTCTCGTCCAATCCAATGAGACAGCGTACA 237
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 213 AATCTTGTTGCATCTTTAGAATCCCTCACACTCTCGTTCAATCCAATGATACAGCGTACA 272
Query 238 AACCGAAGATTGTCTCGATCGGTCCTTATCACCATCATGACGGT-AA----AT----CCG 288
||||||||||||||||||||||||||||||||||| || ||||| || || ||
Sbjct 273 AACCGAAGATTGTCTCGATCGGTCCTTATCACCATGATCACGGTAAAGCTGATAAAGTCG 332
Query 289 ATAAAGCC----AA----A-AAATCACGTTTTCAGATGATCCAGCAGCACAAACAACGGT 339
|||||||| || | ||| |||||||| ||||||||||||||||||||||||| |
Sbjct 333 ATAAAGCCGATAAAGCGGATAAAGCACGTTTTAAGATGATCCAGCAGCACAAACAACGAT 392
Query 340 ATCTTGATATCTTCTTGTCCAAGACGACGAAAAAGGGCGTGGGTTTAGAAGACTTGCACA 399
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 393 ATCTTGATATCTTCTTGTCCAAGACTACGAAAAAGGGCGTGGGCATAGAAGACTTGCAAA 452
Query 400 AGGTGGTATGGAGAAAGGAACATCTCATACGAGATTCCTATTCCGAGGAACTACAACTTA 459
| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 453 ACGTGGTCTGGAAAAAGGAACATCTCATACGAGATTCCTACTCCGAGGAACTACAACTTA 512
Query 460 ATCAAGTAGAGCTGATCGATCTGATGGTTCTTGATGGTTGCTTCATCCTTATGTTGTTCC 519
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 513 ATCAAGTAGAGCTGATCGATCTCATGGTTCTTGATGGTTGCTTCATCCTTATGTTGTTCC 572
Query 520 TCATGGTTTCACGTAAGGTTCTACATAAAACATTTGAGGATCCCATCTTCATGTTGCGGT 579
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct 573 TCTTGGTTTCACGTAAGGTTCCGCATAAAGCATTTGAGGATCCCATCTTCATGTTGAGGT 632
Query 580 GGATTTTACCGACTCTACGAAGTGATCTCCTCCTCCTTGAAAACCAGGTTCCGCTTTTCC 639
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 633 GGATTTTACCAACTCTACGAAGTGATCTCCTCCTCCTTGAAAATCAGGTTCCGCTTTTCC 692
Query 640 TTCTTCGAGATCTTTTTGAGACATCAAAGTTAGCTACTAAAACTAGCTTAAACGAGATGA 699
||||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||
Sbjct 693 TTCTTCGAGATCTTTTTAACACAACAAAGTTAGCTACTAAAACTAGCTTAAATGAGATGA 752
Query 700 TCTTCAACTTCTTTGGCTATTCAATAAAAAGGCCACAAAAATTTTGGGATGAAAGAATGA 759
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 753 TCTTCAACTTTTTTGGCTATTCGATAAAAAGGCCACAAAAATTTTGGGATGAAAGAATGA 812
Query 760 ATCTTGATGCAAGCCATCTTCTTGATCTCATCCGTAAGACTTTCGTACCCGA-TCAATCG 818
||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |
Sbjct 813 ATCTTGATGCAAGCCATCTTCTTGATCTCATCCGTAAGACTTTCGTA-CCAAGTCAACCT 871
Query 819 AAAAAAGACAAAGGAGAAAGGTGGACCAATATGTTCTGCGGTTCCAGATGCTTCAATATA 878
||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 872 AAAAAAGCCGAAGGAGAAAGGTGGACCAATATGTTTTGCGGTTCCAGATGCTTCAATATG 931
Query 879 TTAAGT-CTTGTTAAAAATAAAGTTCAAACGGAGACATCaacaccaccaccgatagaaac 937
|||||| |||| |||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 932 TTAAGTCCTTG-GAAAAATAAAGTTCAAAGGGAGACATCAACACCACCACCAATAGAAAC 990
Query 938 aaaaacacca-c-c-accaccaccaccaccaacactaacacaaccacatccaaaaccacc 994
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 AAAAACACCACCACTACCACCACCACCACCAACACTAACACAACCACATCCAAAACCACT 1050
Query 995 aacaccGCCTCCTCGTCC-TTTCCTCAAGTTGGTTGTCTCAGCCAGAAAACTTCAACTCC 1053
||||||||||||||| || |||||||||||||||||||||||| |||||||||| |||||
Sbjct 1051 AACACCGCCTCCTCG-CCGTTTCCTCAAGTTGGTTGTCTCAGCTAGAAAACTTCGACTCC 1109
Query 1054 GAGGAATAAAATTCCAACAAAAGAAGAAATTTCAGACACCTCTTCACATAACTCTCAAGA 1113
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1110 GAGGAATAAAATTCCAACAAAAGAAGAAATTTGAGACACCTCTTGACATAACTCTCAAGA 1169
Query 1114 ACGGTGTACTAAAAATACCGCCACTACTATTTGATGACTTTTTCAGCTCTCTTTTAATCA 1173
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1170 ACGGTGTACTTAAAATACCGCCACTACTATTTGATGACTTTTTCAGCTCGCTTTTAATCA 1229
Query 1174 ACTGCGTCGCCTTTGAGCAATTTAATGTGCAAGGCACAACCGAAATGACGAGCTATGTTA 1233
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1230 ACTGCGTCGCCTTTGAGCAATTTAACGTGCAAGGCACGACCGAAATGACGAGCTATGTTA 1289
Query 1234 CTTTCATGGGCTGCCTCATAAATACTGCAGATGATGCAACGTTCTTAAGCGAGAAAGGTA 1293
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1290 CTTTCATGGGCTGCCTCATAAACACGGCAGATGATGCAACGTTCTTAAGCGAGAAAGGTA 1349
Query 1294 TCATAGAGAACTATTTTGGAACGGGAGAACAATTATCCGTGTTCTTCAAGGATACAGGTA 1353
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1350 TCATAGAGAACTATTTTGGAACGGGAGAACAATTATCTGTGTTCTTCAAGAATACAGGTA 1409
Query 1354 AAGACATTGT-GTTCACAATATCCAAGAGTTACTTGGCAAATGTGTTCGAGGGAGTCAAC 1412
|||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1410 AAGACATT-TCGTTCACAATATCGAAAAGTTACTTGGCAAATGTGTTCGAGGGAGTCAAC 1468
Query 1413 AAGTACACTTCACAAGGATACCATGTACACTGGGCAGGAGTCAAGTACACATATTTCAAA 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 AAGTACACTTCACAAGGATACCATGTACACTGGGCAGGAGTCAAGTACACATATTTCAAA 1528
Query 1473 AGTCCGTGGACATTTCTATCATCTTGTGCTGCTTTGTTGCTTATTCTGCTTACCATTTTC 1532
||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct 1529 AGTCCGTGGACATTTCTATCATCTTTTGCTGCTTTGGTACTTATTCTGCTTACCATTTTC 1588
Query 1533 CAAGCTTTCTTCGCAGGCTACGCGTATTTTCGCCCTCCAAAGTGATTACACCTTTGGCTC 1592
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1589 CAAGCATTCTTCGCAGGCTACGCGTATTTTCGCCCTCCAAAATGATTACACCTTTGGCTC 1648
Query 1593 TGGATCTCACCAATGTTGCACCTTT 1617
|||||||||| ||||||||| ||||
Sbjct 1649 TGGATCTCACTAATGTTGCATCTTT 1673
> AT5G22550.2 | Symbols: | Plant protein of unknown function (DUF247)
| chr5:7483873-7485458 REVERSE LENGTH=1586
Length=1586
Score = 398 bits (215), Expect = 1e-109
Identities = 466/585 (80%), Gaps = 25/585 (4%)
Strand=Plus/Plus
Query 1002 CCTCCTCGTCCTTTCCTCAAGTTGGTTGTCTCAGCCAGAAAACTTCAACTCCGAGGAATA 1061
|||| ||||||||| || | | |||||||||| |||||||| | ||| || ||||||
Sbjct 923 CCTCGTCGTCCTTTTCTTGGGCTAATTGTCTCAGCAAGAAAACTACGACTTCGGGGAATA 982
Query 1062 AAATTCCA-ACAAAAGAAGAAAT-TTCAGACACCTCTT-CACATAACTCTCAAGAACGGT 1118
||||| | | ||| || ||| || ||||||| || |||||| | |||||| |||
Sbjct 983 AAATT-TATGCGGAAGGAG-AATGTTGAGACACC-GTTAGACATAAGTTTCAAGAGTGGT 1039
Query 1119 GTACTAAAAATACCGCCACTACTATTTGATGACTTTTTCAGCTCTCTTTTAATCAACTGC 1178
| | ||||||| | |||| | ||||| |||||| ||||| |||||| ||||||||
Sbjct 1040 TTGGTTGAAATACCACTACTAGTGTTTGACGACTTTATCAGCAATCTTTTGATCAACTGT 1099
Query 1179 GTCGCCTTTGAGCAATTTAATGTGCAAG--GCACAACCGAAATGACGAGCTATGTTACTT 1236
|| ||||||||||| |||||| || || || | || || || || |||| ||| | ||
Sbjct 1100 GTTGCCTTTGAGCAGTTTAATATG--AGCTGCTCCACTGAGATTACTAGCTTTGTAATTT 1157
Query 1237 TCATGGGCTGCCTCATAAATACTGCAGATGATGCAACGTTCTTAAGCGAGAAAGGTATCA 1296
||||||| ||| | || || || | ||| ||||| || ||||||| ||||||||| |||
Sbjct 1158 TCATGGGTTGCTTGATCAACACAGAAGACGATGCGACTTTCTTAATCGAGAAAGGGATCT 1217
Query 1297 TAGAGAACTATTTTGGAACGGGAGAACAA-TTATCCGTGTTCTTCAAGGATACA--GGTA 1353
|||||||||||||||||||||| ||| || || || | || || || || ||| || |
Sbjct 1218 TAGAGAACTATTTTGGAACGGGTGAAGAAGTT-TCTTTATTTTTTAA-GA-ACATTGGAA 1274
Query 1354 AAGACATTGT-GTTCA-CAATATCCAAGAGTTACTTGGCAAATGTGTTCGAGGGAGTCAA 1411
|||||| | | |||| | ||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 1275 AAGACA-TCTCATTCAGC-ATATCCAAGAGTTTCTTGTCAAATGTGTTCGAGGGAGTGAA 1332
Query 1412 CAAGTACACTTCACAAGGATACCATGTACACTGGGCAGGAG-TCAAGTACACATATTTCA 1470
|||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||
Sbjct 1333 TGAGTACACTTCACAAGGATACCACGTACACTGGGCAGG-GTTCAAGTACACACATTTCA 1391
Query 1471 AAAGTCCGTGGACATTTCTATCATCTTGTGCTGCTTTGTTGCTTATTCTGCTTACCATTT 1530
| | ||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 1392 ACACTCCATGGACATTTCTATCATCTTGTGCTGCTTTGGTGCTTCTTCTCCTTACCATTT 1451
Query 1531 TCCAAGCTTTCTTCGCAGGCT-ACGCGTATTTTCGCCCTCC-AAA 1573
||||||| ||||| |||| || | || || ||||| ||||| |||
Sbjct 1452 TCCAAGCCTTCTTTGCAG-CTTATGCTTACTTTCGTCCTCCCAAA 1495
> AT3G44710.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr3:16251834-16253535 REVERSE LENGTH=1702
Length=1702
Score = 54.7 bits (29), Expect = 3e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 481 TGATGGTTCTTGATGGTTGCTTCATCCTTATG 512
|||||||||||||||||||||||||||| |||
Sbjct 495 TGATGGTTCTTGATGGTTGCTTCATCCTGATG 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5