BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489119
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22610.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1760 0.0
AT5G22600.1 | Symbols: | FBD / Leucine Rich Repeat domains con... 597 9e-170
AT5G22590.1 | Symbols: | Leucine Rich Repeat protein family | ... 206 6e-52
> AT5G22610.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:7515217-7516916 FORWARD LENGTH=1419
Length=1419
Score = 1760 bits (953), Expect = 0.0
Identities = 1226/1355 (90%), Gaps = 30/1355 (2%)
Strand=Plus/Plus
Query 57 TGCAAGAGAGGATCTGATAAGCAAATTACCCGAGGTTTTAATATCTCAGATACTCTCGTA 116
||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 42 TGCAATAGAGGATCTGATAAGCAAATTACCGGAGGTTTTGCTATCTCAGATACTCTCGTA 101
Query 117 TCTTCCGACAAAGGATATTGTCAGGACTAGTGTTTTGTCCAAGAGGTGGAAAAGTATCTG 176
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 102 TCTTCCGACAAAGGATATTGTCAGGACAAGTGTTTTGTCCAAGAGGTGGAAAAGTGTCTG 161
Query 177 GCTTTTGATTCCGGGGTTGGATTTGGACTCTTA-TGAGTTCCCAGATTACAATACCTTTG 235
|||||||||||| ||||||||||||||||| || |||||||||| ||||| |||||||||
Sbjct 162 GCTTTTGATTCCCGGGTTGGATTTGGACTC-TAGTGAGTTCCCACATTACGATACCTTTG 220
Query 236 TGGATTTTATGAACGACTTCCTATTTTCCTCTAGGGAACCGAAGT-CATGCTTGAACAAG 294
|||||||||||||||| |||||||||| |||||||||| ||| | |||||||| |||||
Sbjct 221 TGGATTTTATGAACGAATTCCTATTTTTCTCTAGGGAAGAGAA-TCCATGCTTGCACAAG 279
Query 295 CTCAAGCTAAGTATTCAGAAGGATGAGACTGATCCGTCTTGTGTCACGCTATGGACAGAC 354
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 280 CTCAAGCTAAGTATTCAGAAGAATGAGAATGATCCGTCTTGTGTCACGCTATGGACAGAC 339
Query 355 TTTGTGGCTAGGGGTAAACTTAC-GCATCTTGATGTTGAGTTTGGTGGTCGTTTACT-GA 412
| ||||||||||||||||||| | ||||||||||||||||||||||||||| || | ||
Sbjct 340 TGTGTGGCTAGGGGTAAACTT-CAGCATCTTGATGTTGAGTTTGGTGGTCGCGTAATGGA 398
Query 413 TGCGTGTGTATTGGGAACTGATGCCCCTAAGCCTCTATACCTGTAAGACGCTCCTTCACT 472
||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 399 -GCGTGAGTTTTGGGAAATGATGCCCCTAAGCCTCTATATCTGTAAGACGCTCCTTCACT 457
Query 473 TAAGACTGTATCGGGTATTGTTGCGTAAGTTTGATC-CTCGCGTTGATTCTTTACCTCGT 531
| ||||| ||||||||||||||| |||| ||||||| || ||||||||||||||| ||
Sbjct 458 TGAGACTCTATCGGGTATTGTTGGGTAACTTTGATCAGTC-TGTTGATTCTTTACCTAGT 516
Query 532 CTCAA-AACTTTGTGTTTAGAAGAAAATGTATATCCTAATGAGGCGAGTCTGGAGTCGCT 590
||||| | | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 517 CTCAAGAGC-ATGTGTTTAGAAGAAAATGTATATTCTAATGAGGCGAGTCTGGAGTCGCT 575
Query 591 TATCTCGTCTTGCCCCGTTCTCGAAGATTTGACCATTGTTAGGGCAGATGATAATGTTAG 650
|||||||||||||| |||||||||||||||||||||||||| | ||||||||| || ||
Sbjct 576 TATCTCGTCTTGCCGCGTTCTCGAAGATTTGACCATTGTTAAGATAGATGATAACGTAAG 635
Query 651 -G--A-A--CAACTCGGGGCTTGTGGTTGATGCCCCTAGACTCAAGTATTTGACTTTCAA 704
| | | |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 636 AGATAGAGGGAACTCGGGACTTGTGATTGATGCCCCTAGACTCAAGTATTTGACTTTCAA 695
Query 705 CAATGAAAAATCCAAAAGTAAAACCATAAGCAATTTGGGTTCCTTAGTTAAGGTCAATAT 764
|||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 696 CAATGACCAATCGAAAAGTAAAACCATAAGCAATTTAGGTTCCTTAGTTAAGGTCACTAT 755
Query 765 TCTAGGCCCCTTTAATATTTCAAGTGTAGTTGGCTGTTCGAAGGAACAAATGGCCCATAA 824
||| |||||| | || |||||||| ||||| |||||| || || ||||||||||||||||
Sbjct 756 TCTTGGCCCCATAAAGATTTCAAGGGTAGTGGGCTGTACGGAGCAACAAATGGCCCATAA 815
Query 825 CTTTCTCGCGGGTATCTCGACAGTTAGGTATCTCATCGTCTCTGAGGATATGATGGAGTT 884
|||||| |||| ||||| | |||||||||||||||||||||||| |||||||||||| |
Sbjct 816 GTTTCTCACGGGCATCTCAAGAGTTAGGTATCTCATCGTCTCTGAAGATATGATGGAGGT 875
Query 885 AATCTA-TTCCTACTTGAAAGTGGATTCATTGCCACAGTTTTGCAACTTGTCCTGTTTGA 943
||| | |||||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct 876 CATC-AGTTCCTACTTGAAAGAAGATTCATTGCCACAGTTTGGCAACTTGTCCTATTTGA 934
Query 944 AAGCAAGTGTTTGGTTATCATCCTTTGACTTCCTGGACATCCTGCCAAAGCTTCTTGAAA 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 AAGCAAGTGTTTGGTTATCATCCTTTGACTTCCTGGACATCCTGCCAAAGCTTCTTGAAA 994
Query 1004 GCTGTCCGAATCTCAAATTTATCGTCTTGGATACAACTTGTATAGTTAATCGAACGAAAG 1063
||||||||||||| |||| ||||||||||| ||||||||||||||| |||| |||||||
Sbjct 995 GCTGTCCGAATCTAAAATCCATCGTCTTGGAAACAACTTGTATAGTTGATCGTACGAAAG 1054
Query 1064 CAATGGTAGAAAGGAGAGTCTCGCCTGTGCCTAAGTGTTTGTTGTCATCGCTGGAGTTTG 1123
| | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1055 CTACGGTAGAAAGGAGAGTCTCGTCTGTGCCTGAGTGTTTGTTGTCATCGCTGGAGTTTG 1114
Query 1124 TAGAGATAAAAAACAGAATCTCCGTAGATGATGGTGCATTGGAGGTTGCAAGGTACTTTG 1183
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1115 TAGAGATAAAAAACAGAATCTCGGTAGATGATGGTGCATTGGAAGTTGCAAGGTACTTTG 1174
Query 1184 TAGAGAACTCTATGAATCT-CAAGAAACTTGTTCTGGGTTTGGCATCTTCCTTTCTAAGA 1242
||||||||||| ||||||| || |||| |||||||| |||||||||||||||||||||||
Sbjct 1175 TAGAGAACTCTGTGAATCTACA-GAAAGTTGTTCTGCGTTTGGCATCTTCCTTTCTAAGA 1233
Query 1243 CTAAGACTAGCAAATCGGGCTGTCTTAAAGGATCTCCTTGCATTGCCGAGGCGATCTAGC 1302
| | | | ||||| |||||||| |||||| |||||| |||||||||||||||||||
Sbjct 1234 CGA-G----G-AAATCAAGCTGTCTTGAAGGATATCCTTGAATTGCCGAGGCGATCTAGC 1287
Query 1303 ATGTGTCAAATCGAAGTTTTTAATGCGCTAAACGGCCGTGCTCTTTGTTATCGaaaaaac 1362
|||||||| |||||||| ||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1288 ATGTGTCAGATCGAAGTCTTTAATGCGCTAAACGGCCATGCTCTTTGTTTTCGCAAAAAC 1347
Query 1363 aaaaaaaCCGGCCGTGTTGG-T-AGAATATTTTGA 1395
|||| ||||||||||||| | ||| ||||||||
Sbjct 1348 AAAATAACCGGCCGTGTTTTCTTAGACTATTTTGA 1382
> AT5G22600.1 | Symbols: | FBD / Leucine Rich Repeat domains containing
protein | chr5:7510023-7511788 FORWARD LENGTH=1573
Length=1573
Score = 597 bits (323), Expect = 9e-170
Identities = 512/600 (85%), Gaps = 26/600 (4%)
Strand=Plus/Plus
Query 57 TGCAAGAGAGGATCTGATAAGCAAATTACCCGAGGTTTTAATATCTCAGATACTCTCGTA 116
||| ||||| ||||||||||||||||||||| | | ||| |||||||| || ||||||||
Sbjct 42 TGCCAGAGAAGATCTGATAAGCAAATTACCCAACGCTTTGATATCTCACAT-CTCTCGTA 100
Query 117 TCTTCCGACAAAGGATATTGTCAGGACTAGTGTTTTGTCCAAGAGGTGGAAAAGTATCTG 176
||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 101 TCTTCGGACAAAGGATGTTGTCAGGACTAGTGTTTTATCCAAGAGGTGGAAAAGTGTCTG 160
Query 177 GCTTTTGATTCCGGGGTTGGATTTGGACTCTTATGAGTTCCCAGATTACAATACCTTTGT 236
|| |||| |||| |||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 161 GCGTTTGGTTCCCGGGTTGGATTTGGACTCTTATGAGTTCCTAGAATACTATACCTTTGT 220
Query 237 G-GATTTTATGAACGACTTCCT--ATTTTCCTCTAGGGAACCGAAGTCATGCTTGAACAA 293
| | |||| |||| | |||| ||||| | ||||||| | ||||||| |||||||||
Sbjct 221 GCG-TTTTGCGAACAAGATCCTAGATTTT--TGTAGGGAA-CAAAGTCATTCTTGAACAA 276
Query 294 GCTCAAGCTAAG-TATTCAGAAGGATGAGACTGATCCGTCTTGTGTCACG-CTATGGACA 351
||||||||| || ||||||||||||| |||||| || ||||||||||||| || |||| |
Sbjct 277 GCTCAAGCT-AGTTATTCAGAAGGATAAGACTGGTCAGTCTTGTGTCACGCCT-TGGATA 334
Query 352 GACTTTGTGGCTAGGGGTAAACTTAC-GCATCTTGATGTTGAGTTTGGTGGTCGT-T-TA 408
|||| ||| ||||||||||| ||| | ||| |||||||||||||| |||||| || | ||
Sbjct 335 GACTATGTCGCTAGGGGTAACCTT-CAGCACCTTGATGTTGAGTTAGGTGGTTGTGTATA 393
Query 409 CTGATGCGTGTGTATTGGGAACTGATGCCCCTAAGCCTCTATACCTGTAAGACGCTCCTT 468
| | |||| |||||||| |||||||| ||||||| |||| |||| |||||||||||
Sbjct 394 -T-TTTCGTGAATATTGGGAGGTGATGCCCGTAAGCCTTTATATCTGTGAGACGCTCCTT 451
Query 469 CACTTAAGACTGTATCGGGTATTGTTGCGTAAGTTTGATCCTCGCGTTGATTCTTTACCT 528
||||||||||| |||||||||| | || |||| ||||| | | || ||||||||||
Sbjct 452 CACTTAAGACTCTATCGGGTATCGATGGGTAACTTTGA--GT--C--TGTTTCTTTACCT 505
Query 529 CGTCTCAAAACTTTGTGTTTAGAA-GAAAATGTATATCCTAATGAGGCGAGTCTGGAGTC 587
| ||| || ||||||||||||||| | |||| |||||||||||||||||||| |||||||
Sbjct 506 CATCTTAAGACTTTGTGTTTAGAACG-AAATATATATCCTAATGAGGCGAGTGTGGAGTC 564
Query 588 GCTTATCTCGTCTTGCCCCGTTCTCGAAGATTTGACCATTGTTAGGGCAGATGATAATGT 647
|||||||||||||||||||||||| ||||||||||||||| ||||| | ||||||||||
Sbjct 565 GCTTATCTCGTCTTGCCCCGTTCTTGAAGATTTGACCATTCTTAGGATAAATGATAATGT 624
Score = 558 bits (302), Expect = 4e-158
Identities = 580/708 (82%), Gaps = 43/708 (6%)
Strand=Plus/Plus
Query 639 TGATAATGTTAGGA-ACAACTCGGGGCTTGTGGTTGATGCCCCTAGACTCAAGTATTTGA 697
||| || |||| || | ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 715 TGAAAAGGTTA-GAGAGAACTCGGGGCTTGTGATTGATGCGCCTAGACTCAAGTATTTGA 773
Query 698 CTTTCAACAATGAAAAATCCAAAAGTAAAACCATAAGCAATTTGGGTTCCTTAGTTAAGG 757
|||||||| | |||| ||| |||||||||| ||| || |||||| |||||||||||||||
Sbjct 774 CTTTCAACTACGAAAGATCGAAAAGTAAAATCATGAGAAATTTGAGTTCCTTAGTTAAGG 833
Query 758 TCAATATTC-TAGGCCCCTTTAATATTTCAAGTGTAGTTGGCTGTTCGA-AGGAACAAAT 815
| || ||| || || ||||| ||||||||||||||| ||||||||| | || |||||||
Sbjct 834 TTAACGTTCTTA-GCTCCTTTGATATTTCAAGTGTAGCTGGCTGTTC-AGAGCAACAAAT 891
Query 816 GGCCCATAACTTTCTCGCGGGTATCTCGACAGTTAGGTATCTCATCGTCTCT-GAGGATA 874
||||||||| ||| || | |||||||||| ||||||| |||| ||| ||||| | |||||
Sbjct 892 GGCCCATAATTTTTTCACCGGTATCTCGAGAGTTAGGGATCTGATCATCTCTCG-GGATA 950
Query 875 TGATGGA-GTTAATCTATTCCTACTTGAAAGTG-GATTCATTGCCACAGTTTTGCAACTT 932
|||| || |||||||| || ||||||||||| | | ||| |||||||||||||||||||
Sbjct 951 TGAT-GAGGTTAATCTTTTACTACTTGAAAG-GAAACTCACTGCCACAGTTTTGCAACTT 1008
Query 933 GTCCTGTTTGAAAGC-AA-GTGTTTGGTTATCATCCTTTGAC-TTCCTGGACATCCTGCC 989
||| | ||||||| | || | | | | | ||||| ||| | |||||||||||| | |
Sbjct 1009 GTCTTATTTGAAAACAAACTTATCT-G-AAACATCC-TTGGCATTCCTGGACATCTTTAC 1065
Query 990 AAAGCTTCTTGAAAGCTGTCCGAATCTCAAATTTATCGTCTTGGATACAACTTGTATAGT 1049
||||||||||||||||||||||||||| |||| |||| ||||| | ||||||| | |
Sbjct 1066 AAAGCTTCTTGAAAGCTGTCCGAATCTAAAATCCATCGCCTTGGGTTTAACTTGTTTCCT 1125
Query 1050 TAATCGAACGAAAGCAATGGTAGAAAGGAGAGTCTCG-CCTGTGCCTAAGTGTTTGTTGT 1108
| || ||| || |||| |||| ||| |||| | || |||||||| |||||| |||
Sbjct 1126 T----GA-CGA---CA-TGGTTGAAATGAGTGTCTGGTCC-GTGCCTAAATGTTTGCTGT 1175
Query 1109 CATCGCTGGAGTTTGTAGAGATAAAAAACAGAAT-CTC-CGTAGATGATGGTGCATTGGA 1166
||||||| || |||||||||||||||||| ||| | | | | |||||||||| | || |
Sbjct 1176 CATCGCTCGAATTTGTAGAGATAAAAAAC-GAACACCCACCT-GATGATGGTGTACTGAA 1233
Query 1167 GGTTGCAAGGTACTTTGTAGAGAACTCTATGAATCTCAAGAAACTTGTTCTGGGTTTGGC 1226
||||||||||||||||||||||||||| | |||||||||||||||| ||| |||| |
Sbjct 1234 AGTTGCAAGGTACTTTGTAGAGAACTCTGTAAATCTCAAGAAACTTGCTCTACATTTG-C 1292
Query 1227 ATCTTCCTTTCTAAGACTAAGACTAGCAAATCGGGCTGTCTTAAAGGATCTCCTTGCATT 1286
|| || ||||| ||| || || ||||| ||||||||||| ||||||||||||||
Sbjct 1293 AT-TT--TTTCTTT--CTA-GA--AGGAAATCCAGCTGTCTTAAACGATCTCCTTGCATT 1344
Query 1287 GCCGAGGCGATCTAGCATGTGTCAAATCGAAGTTTTTAATGCGCTAAA 1334
|||||| ||||||||||||||||| |||||||||||||||| || |||
Sbjct 1345 GCCGAGACGATCTAGCATGTGTCAGATCGAAGTTTTTAATGTGC-AAA 1391
> AT5G22590.1 | Symbols: | Leucine Rich Repeat protein family
| chr5:7504536-7505838 FORWARD LENGTH=915
Length=915
Score = 206 bits (111), Expect = 6e-52
Identities = 202/244 (83%), Gaps = 14/244 (6%)
Strand=Plus/Plus
Query 104 AGATACTCTCGTATCTTCCGACAAAGGATATTGTCAGGACTAGTGTTTTGTCCAAGAGGT 163
||||||||| |||||| |||||||| || | | | | ||||||||||||||||||||
Sbjct 29 AGATACTCTTGTATCTCCCGACAAA-GA-A-AG-C-TG-TTAGTGTTTTGTCCAAGAGGT 82
Query 164 GGAAAAGTATCTGGCTTTTGATTCCGGGGTTGGATTTGGACTCTTATGAGTTCCCAGATT 223
|||||||| ||||||||| | |||| ||||| ||||| |||||| | ||||||||| |||
Sbjct 83 GGAAAAGTCTCTGGCTTTCGTTTCCCGGGTTAGATTTCGACTCTGAAGAGTTCCCAAATT 142
Query 224 ACAATACCTTTGTG-GATTTTATGAAC-GACTTCCTAT-TTTCCTCTAGGGAACCGAAGT 280
||||| |||||||| | ||||||| || | ||| || |||| |||||||||| |||||
Sbjct 143 ACAATGCCTTTGTGAG-TTTTATGGACAGG-TTCGTAGATTTC-TCTAGGGAACGGAAGT 199
Query 281 CATGCTTGAACAAGCTCAAGCTAAGTATTCAGAAG-GATGAGACTGATCCGTCTTGTGTC 339
|||||||| ||||||||||||||||||| |||||| | || || ||||| || | || ||
Sbjct 200 CATGCTTGCACAAGCTCAAGCTAAGTATCCAGAAGAGTTG-GAGTGATCAGTATCGTATC 258
Query 340 ACGC 343
||||
Sbjct 259 ACGC 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5