BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489120
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22620.1 | Symbols: | phosphoglycerate/bisphosphoglycerate ... 2254 0.0
> AT5G22620.1 | Symbols: | phosphoglycerate/bisphosphoglycerate
mutase family protein | chr5:7517591-7520253 REVERSE LENGTH=1619
Length=1619
Score = 2254 bits (1220), Expect = 0.0
Identities = 1398/1485 (94%), Gaps = 7/1485 (0%)
Strand=Plus/Plus
Query 2 AAAAATAAAATAAAATGATTTCTCTACCACTCACTACACCGATTTTACCCAGCCGGTGTC 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 AAAAATAAAATAAAATGATTTCTCTACCACTCACTACACCGATTTTACCCAGCCGGTGTC 76
Query 62 TCCTCCACCAAACCCGCCGGCAAAATTCGACTCACCGCCGCTTCTGGATTCGATCATCGT 121
| |||||| |||||||||||||||| ||||||| ||||||||| | |||||||||||| |
Sbjct 77 TTCTCCACAAAACCCGCCGGCAAAACTCGACTCGCCGCCGCTTATTGATTCGATCATCAT 136
Query 122 CGAGCTTACATGAGCAAGTCACCGCGAAGACGACGAAGCGAGTAGTTCTTGTCAGACATG 181
|||||||||| || ||| |||||| | |||||||||||||||| |||||||| |||||||
Sbjct 137 CGAGCTTACAAGACCAATTCACCGTGGAGACGACGAAGCGAGTGGTTCTTGTGAGACATG 196
Query 182 GACAGAGCACGTGGAACGAAGAAGGGAGAATTCAAGGAAGCTCCGATTTCTCCGTTTTGA 241
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 197 GACAGAGCACGTGGAACGAAGAAGGGAGGATTCAAGGAAGCTCCGATTTCTCCGTTTTGA 256
Query 242 CGAAGAAAGGCGAGTCTCAGGCCGACATTTCTCGCCAGATGCTCATCAACGACTCATTCG 301
|||||||||||||||||||||| || |||||||| |||||||| ||| ||||||| ||||
Sbjct 257 CGAAGAAAGGCGAGTCTCAGGCTGAAATTTCTCGTCAGATGCTTATCGACGACTCCTTCG 316
Query 302 ATGTCTGCTTCACCAGTCCATTGAAGAGATCAAAGAAAACAGCTGAAATCATATGGGGAA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 ATGTCTGCTTCACCAGTCCATTGAAGAGATCAAAGAAAACAGCTGAAATCATATGGGGAA 376
Query 362 GTCGAGAAAATGAGATGATTTTCGACTACGAGCTTAGAGAAATCGATCTCTACTCGTTTC 421
|| |||||| ||||||||||||||| ||||| || |||||||||||||||||||| ||||
Sbjct 377 GTAGAGAAAGTGAGATGATTTTCGATTACGATCTCAGAGAAATCGATCTCTACTCTTTTC 436
Query 422 AAGTAAGTCTACTTAAGAAAGAAGGGAAAGAGAAGTTCGGTGAAGCTTTTAAGCAATGGC 481
||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 437 AAG---GTCTACTTAAGAAAGAAGGGAAAGAGAAGTTTGGGGAAGCTTTTAAGCAATGGC 493
Query 482 AAGAAGATCCGGCGAACTTCATCATCGATGGTCATTATCCCGTGAGAGAGTTATGGTCAC 541
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 494 AAGAAGATCCGGCGAACTTTATCATCGATGGTCATTATCCCGTAAGAGAGTTATGGTCAC 553
Query 542 GTGCTAGAAGCTGTTGGCCCGGTATTCTTGCTCATGAGAGCAAGTCTGTTCTTGTTGTTG 601
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 554 GTGCTAGAAGCTGTTGGCCTGGTATTCTTGCTCATGAGAGCAAGTCTGTTCTCGTTGTTG 613
Query 602 CTCATAATGCTGTTAATCAGGCTCTTGTGGCAACAGCAATTGGACTGGGAACAGAATATT 661
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 614 CTCATAATGCTGTTAATCAGGCTCTTCTGGCAACAGCAATTGGACTGGGAACAGAATATT 673
Query 662 TTAGGAGTTTGTTGCAGAGCAATTGCGGTGTAAGTGTACTGGACTTCACACCAAGAGCTG 721
||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 674 TTAGGAGTTTGTTGCAGAGCAATTGTGGTGTAAGTGTATTGGACTTCATACCAAGAGCTG 733
Query 722 ATGGTGGATCTCCTCACGTATGTCTTAATCGACTAAATCAGACACCTAATTCGCCTCTAG 781
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 ACGGTGGATCTCCTCACGTATGTCTTAATCGACTAAATCAGACACCTAATTCGCCTCTAG 793
Query 782 CTGGTGGAAGTTCTGGTGGCCGGAAAGCTAGTAAGCAGGTCATACTTGTCTGCCATGGTC 841
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 794 CTGGTGGAAGTTCTGGTGGCCGGAAAGCTAGTAAGCAGATTATACTTGTCTGCCATGGTC 853
Query 842 AGGGGAATAATGAGGATTCTGCAGTTATTAACCAAGCAGCCACTAATGATCAGTCAATGA 901
|||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||
Sbjct 854 AGGGGAATAATGAGGATTCTGCTGTTATTAACCAAGCAGCTAATAATGATCAGGCAATGA 913
Query 902 ACATGCTTGGTGTGATACAGTCACAGAAAACCGCAGAGCTTCTTCTTGATCTAAGGGTTA 961
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 914 ACATGCTTGGTGTGATACATTCACAGAAAACCGCAGAGCTTCTACTTGATCTAAGGGTTA 973
Query 962 GTTCTATAGTTTGCAGCCCTAAAGCAGCCTCCGTTGAGACTGCTGGAGTAATATCCCGGG 1021
|||| |||||||||||||||||| |||||||| ||||| || ||||||||||||||||||
Sbjct 974 GTTCAATAGTTTGCAGCCCTAAAACAGCCTCCATTGAGTCTTCTGGAGTAATATCCCGGG 1033
Query 1022 TGCAAAAAGCTGCTGGTTGTTTAGGTGTAGATAGTGTGCCTCGCCACGTGAAAACGAAAC 1081
||||| ||||||| ||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1034 TGCAAGAAGCTGCGGGTTGTTTAGGTGTAGATAATGTGCCTCACTACGTGAAAACGAAAC 1093
Query 1082 AAATGAATGAGCTCGATGTTGAGGGTGTTCTTCGCAAATCTAATCAGGACAACGATGTGA 1141
||||||||||||| ||||||||| |||||||||||||||| ||| ||||||| |||||||
Sbjct 1094 AAATGAATGAGCTTGATGTTGAGAGTGTTCTTCGCAAATCCAATAAGGACAATGATGTGA 1153
Query 1142 TTGCAAGTCAGTTAGACGAAGAAGCGGTTTCAGCTCTATGGAACAGATCCG-GAAAAGCA 1200
|||||||||| ||||||||||||||| |||||||||| ||||||||||||| |||| |||
Sbjct 1154 TTGCAAGTCAATTAGACGAAGAAGCGTTTTCAGCTCTGTGGAACAGATCCGAGAAA-GCA 1212
Query 1201 TGGGAATCACTCTTAGACGAACTATCGGACGAGGAGTCAAACCCAGGAGAAATCATGGTG 1260
||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 1213 TGGGAATCACTCTTAGACGAACTATCGGATGAGAAGTCAAACCCTGGAGAAATCATGGTG 1272
Query 1261 GTGGTTGGTCCTCCAATGACTCACATATCGCTCATCGCACAATGCCTTAACCTCACTAAA 1320
|||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1273 GTGGTTGGTCCTGCAATGACTCACATTTCACTCATAGCACAATGCCTTAACCTCACTAAA 1332
Query 1321 GAAGGGCTCGGGCTGTTCCACCTAGACGCAGGTAGCATCAGTGTCATAGATTTCCCGGAT 1380
|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GAAGCGCTCGGGTTGTTTCACCTAGACGCAGGTAGCATCAGTGTCATAGATTTCCCGGAT 1392
Query 1381 GGTCCTAGCAG-AAGAGGAGTAATCCGTTGTACAAACTACACCGCTCATCTTGGAAGATG 1439
|||||||| || || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1393 GGTCCTAGTAGCAA-AGGAGTAATCCGTTGCACAAACTACACCGCTCATCTTGGAAGATG 1451
Query 1440 GTGCATCCCGATCACAAGACCCGCCTGAAGAATCCTGTCTTAAAC 1484
|| |||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 1452 GTCCATCCCTATCACAAAACCCGCCTGAAGAATCTTGTCTTAAAC 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73192394610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5