BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489121
Length=2736
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22640.1 | Symbols: emb1211 | MORN (Membrane Occupation and ... 4189 0.0
> AT5G22640.1 | Symbols: emb1211 | MORN (Membrane Occupation and
Recognition Nexus) repeat-containing protein | chr5:7529368-7533784
FORWARD LENGTH=2814
Length=2814
Score = 4189 bits (2268), Expect = 0.0
Identities = 2535/2662 (95%), Gaps = 25/2662 (1%)
Strand=Plus/Plus
Query 30 CTCTCCCATGGCTAACGAAGAACTCACTGAGTCACAGCAACAAGAAGACCCAAGTCAACA 89
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 CTCTCTAATGGCTAACGAAGAACTCACTGAGTCACAGCAACAAGAAGACCCAAGTCAACA 108
Query 90 ATCACCCAATGCGGATGAAGAAAACGGCTCCA-ACTCCGACTCAGACTCAGACTCAGACT 148
|| ||||||||| ||||||||||| |||| || ||||||||||| ||||||||||||||
Sbjct 109 ATTACCCAATGCAGATGAAGAAAAGGGCT-CAGACTCCGACTCAAACTCAGACTCAGACG 167
Query 149 CATCATCCCAATCCTCCGGCGACGATTTCTACATCTCCGAGTCAGAAAACGAAGCAGAAG 208
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 168 CATCATCCCAATCCTCCGGCGACGATTTCTACATCTCCGAGTCAGAAAATGAAGCAGAAG 227
Query 209 GAGACAACGCCATCTTCAACTACGTAAGACCAAGTGACATACCTCCTGACCCAAACGCAA 268
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GAGACAACACAATCTTCAACTACGTAAGACCAAGTGACATACCTCCTGACCCAAACGCAA 287
Query 269 ACCCAGAAACCAACATCCGCCGATTCAATCGCGTCCTCGATGGGAAACGAGTGAAGCGTA 328
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 288 ACCCAGAAACCAACATTCGCCGATTCAATCGAGTCCTCGATGGCAAACGAGTGAAGCGTA 347
Query 329 TGCaagaagaagaagaagagaaATACACATTCTATGAGGATCTTTTCGATTTCCCTAGAG 388
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 348 TGCAAGAAGAAGAAGAAGATAAATACACTTTCTATGAAGATCTTTTCGATTTCCCTAGAG 407
Query 389 ACCCAGAACGGTGGAAGGAACAAGATTTAAGGGAGATTTGGGCAGATGCTCCATTGGAGA 448
|||||||||| |||||||| ||||||||||| ||||||||||| |||| |||||||||||
Sbjct 408 ACCCAGAACGTTGGAAGGAGCAAGATTTAAGAGAGATTTGGGCTGATGGTCCATTGGAGA 467
Query 449 TGACTAAACCTGGTTGGGATCCAGTTTGGGCTGATGAAGATGATTGGGAAGTTGTTAACG 508
|||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct 468 TGACGAAACCTGGTTGGGATCCTGCTTGGGCTGATGAAGATGATTGGGATGTTGTTAACG 527
Query 509 ATGAGATTCAAGAAGGACGAGATCCTGGGATTCAACCTTTTTATGTTCCTTATAGGAAAC 568
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 528 ATGAGATTCAAGAAGGTCGAGATCCTGGGATTCAACCTTTTTATGTTCCGTATAGGAAAC 587
Query 569 CTTATCCAGCGATTCCAGATAATCATTATGATATTGAGAATGCTAAAGGTGTTGTTGAAG 628
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 CTTATCCAGCTATTCCAGATAATCATTATGATATTGAGAATGCTAAAGGTGTTGTTGAAG 647
Query 629 AGCTTGATAGGATTGAAGAGTTTCTTCAATGGGTCAGCTATATTTTCCCTGATGGAAGCT 688
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 648 AGCTTGATAGGATTGAAGAGTTTCTTCAGTGGGTCAGCTATATTTTTCCTGATGGAAGCT 707
Query 689 CGTACGAAGGCACAGTCTGGGATGACTTGGCTCAAGGCAAAGGTGTTTATATTGCTGAAA 748
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CGTACGAAGGCACAGTTTGGGATGACTTGGCTCAAGGCAAAGGTGTTTATATTGCTGAAA 767
Query 749 ATGGGCTTGTGAGGTATGAGGGTGAATGGCTTCAGAATGACATGGAAGGTCATGGGGTTG 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ATGGGCTTGTGAGGTATGAGGGTGAATGGCTTCAGAATGACATGGAAGGTCATGGGGTTA 827
Query 809 TCGAAGTTGATATTCCTGACATTGAGCCCATGCCAGGTTCCAAGCTTGAAGCTAAGATGC 868
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 828 TCGACGTTGATATTCCTGACATTGAGCCCATACCAGGTTCCAAGCTTGAAGCTAAGATGC 887
Query 869 GTGCGGAAGGAAGGATTATCAAAAGAGATTACATGACTCCAGAAGACAGAAAGTGGTTGG 928
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 888 GTGCGGAAGGAAGGATTATCAAGAGAGATTACATGACTCCAGAAGACAGAAAGTGGTTGG 947
Query 929 AAATGGATGTCGAGGACAGTGTTGCACTTACTGATGGGAATTACCAAGTTCCTTTCTATG 988
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 948 AAATGGATGTCGAGGATAGTGTTGCACTTACTGATGGGAATTTTCAAGTTCCTTTCTATG 1007
Query 989 AAAACGAAGAGTGGGTCACACAGTTTGGCAAGAAACCGGAGAAAGGTCGGTATCGCTATG 1048
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1008 AAAACGAAGAATGGGTCACACAGTTTGGCGAGAAACCGGAGAAAGGTCGGTATCGCTATG 1067
Query 1049 CTGGTCAATGGAAGCACAGTCGAATGCATGGGTGTGGTGTCTATGAAGTTAACGAACGCA 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CTGGTCAATGGAAGCACAGTCGAATGCATGGGTGTGGTGTCTATGAAGTTAACGAACGCA 1127
Query 1109 TCCTATATGGTAGATTCTACTTTGGGGAGCTATTGGAGGAGGAGCATGGCTGTACCGTAG 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TCCTATATGGTAGATTCTACTTTGGGGAGCTATTGGAGGAGGAGCATGGCTGTACCGTAG 1187
Query 1169 ATATTTGTGCGCTGCATTCTGGTTTGGCGGAGGTGGCTGCAGCTAAGGCTCGAATGTTTG 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 ATATTTGTGCGCTGCATTCTGGTTTGGCGGAGGTGGCTGCAGCTAAGGCTCGAATGTTTG 1247
Query 1229 TAAACAAACCCGACGGAATGATTAGGGAAGAGAGGGGTCCATATGGTGATCCTCAACATC 1288
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1248 TAAACAAACCCGACGGAATGATTAGGGAAGAGAGGGGACCATATGGTGATCCTCAACATC 1307
Query 1289 CGTATTTTTATGAAGAAGATGATGTGTGGATGGCACCGGGTTTCATTAACCAATTTTATG 1348
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 1308 CGTATTTTTATGAAGAAGATGATGTGTGGATGGCGCCTGGTTTTATTAACCAATTTTATG 1367
Query 1349 AAGTACCTGAGTATTGGGAAACCTATGTAGACGAGGTGGATCAAGAAAGGGAAATGTGGT 1408
||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||
Sbjct 1368 AAGTACCTGAGTATTGGGAAACCTACGTAGGCGAGGTGGATCAAGAGAGGGAAATGTGGT 1427
Query 1409 TGAACTCTTTTTACAAAGCTCCTTTGAGGTTACCAATGCCTGCTGAGCTCGAACATTGGT 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TGAACTCTTTTTACAAAGCTCCTTTGAGGTTACCAATGCCTGCTGAGCTCGAACATTGGT 1487
Query 1469 GGGAAAATGTGGAGGTGACACCAGAGTTTGTCTTACTGAACAAAGAACCTGAACCTGATC 1528
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1488 GGGAAAATGTGGAGGTGACACCGGAGTTTGTTTTACTGAACAAAGAACCTGAACCTGATC 1547
Query 1529 CAAATGATCCTTCAAAACTTGTCCAGAAGGAGGACCCTGTTATTTTACATACACCAACAG 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CAAATGATCCTTCAAAACTTGTCCAGAAGGAGGACCCTGTTATTTTACATACACCAACAG 1607
Query 1589 GTCGAATAATCAACTATGTAGAGGACGAAAAGCACGGCATTCGACTCTTTTGGCAGCCTC 1648
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1608 GTCGAATAATCAACTATGTAGAGGATGAAAAGCATGGCATTCGACTATTTTGGCAGCCTC 1667
Query 1649 CTCTGGAGGAAGGAGAAGATGTGGATCCTTCAAAAGTTGAGTTTCTGCCACTTGG-TTAC 1707
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 1668 CTCTGGAGGAAGGAGAAGAAGTGGATCCTTCAAAAGTTGAGTTTCTGCCACTTGGGTT-C 1726
Query 1708 GACGAGTTCTATGGGAAAGAAGTGGCAGTGAAAAAGGAACACCCAATAAAAAGATTCGTA 1767
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 1727 GACGAGTTCTATGGGAAAGAAGTGGTAGTGAAAAAGGAACACCCAATAAAAAGCTTTGTA 1786
Query 1768 CTTGGAATCGAAAAATCGGTGAAGCCAATGCTTGACGGATTAGAGAAATGGACAGAAGAG 1827
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1787 CTTGGAATCGAGAAATCGGTGAAGCCGATGCTTGACGGATTAGAGAAATGGACAGAAGAG 1846
Query 1828 AAAAAGAAAGCAAACGAGGAGAGAAAGGAGATGATACAG-AATGAGCTTGAGTTAGTAGA 1886
|||||||||||| | |||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1847 AAAAAGAAAGCATATGAGGAGAGAAAGGAGATGATACAGCAA-GAACTTGAGTTAGTAGA 1905
Query 1887 GGCTGAGATTTGCTTAGAGGAAGCTATAGAAGATATGGATGAAGTATTGAAGCAGAAAGA 1946
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1906 GGCTGAGATTTGCTTAGAGGAAGCTATAGAAGATATGGATGAAGAATTGAAGAAGAAAGA 1965
Query 1947 ACAAGAAGAGGAAAAGAAAACTGAAATGGGTTTGGCTGAAGAGGATGAAGATGTTTTGGT 2006
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1966 ACAAGAAGAGGAAAAGAAAACTGAAATGGGTTTAACTGAAGAGGATGAAGATGTTTTGGT 2025
Query 2007 CCCGGTTTATaaagaagagaaagttgtcactgccaaagagaagatacaagagaagaaaca 2066
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2026 CCCGGTTTATAAAGAAGAGAAAGTTGTCACTGCCAAAGAGAAGATACAAGAGAATAAACA 2085
Query 2067 agaagagaaatacaaagatgatgatgatgaggatga-g--gatg---atgatgatgacga 2120
|||||||||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 2086 AGAAGAGAAATACAAAGATGATGATGATGAGGATGATGACGATGGTGATGATGATGACGA 2145
Query 2121 tgatgatgatgat------CTTGGGCCATCAAGTTTTGGATCTGCAGACAAGGGCAGGAG 2174
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2146 TGATGATGATGATGATGATCTTGGGCCATCAAGTTTTGGATCTGCAGACAAGGGAAGGAG 2205
Query 2175 GAATTCTCCTTTTTCTTCATCCTCTTTGTCTTTTGCTTCGTGTACCCTCTTTCCCGCGGT 2234
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2206 GAATTCTCCTTTTTCTTCATCCTCATTGTCTTTTGCTTCGTGTACCCTCTTTCCTGCGGT 2265
Query 2235 ACAATCAACACTAGAAAGCTCGTTTCTAGCATGGAAGCAACACCGAGCAGAACCATCAAA 2294
|||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2266 ACAATCAAGACTAGAAAGCTCATTTCTAGCATGGAAGCAACATCGAGCAGAACCATCAAA 2325
Query 2295 AGTGAACACAGGAATCATCAAAGGTGCAGATAACTCATCAGCTTCTATCCATTTTCCTCC 2354
||||||||||||||||||||||||||| |||| | |||||||||| ||||||||||||||
Sbjct 2326 AGTGAACACAGGAATCATCAAAGGTGCTGATACCGCATCAGCTTCAATCCATTTTCCTCC 2385
Query 2355 ATTGCCAAGAAACAAAGCCAGATTGAAGATGGGAAAGGTAGCAAACCAAGGTTGTGTCCA 2414
|||| | || ||||| || |||||||||||||||||||||||||||| ||||||||||||
Sbjct 2386 ATTGTCGAGTAACAATGCTAGATTGAAGATGGGAAAGGTAGCAAACCGAGGTTGTGTCCA 2445
Query 2415 GAGAAGCTATGGAAGCTCAAGATCCCAGTCTCAGTTAATGTCTCTCTCTCGACTACTATC 2474
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||
Sbjct 2446 GAGAAGCTATGGAAGCTCAAGATCTCAGTCTCAGTTAATGTCTCTATCACGACTACTTTC 2505
Query 2475 TTGCAATGCATCATGTTCT-C--CTCCTCCTGATAGCAGCTCCGGTGAAGACCTCAGAGA 2531
|||||| ||||||| ||| | ||||||| |||||||||||| ||||| |||||| |||
Sbjct 2506 TTGCAACGCATCATCATCTTCTTCTCCTCCCGATAGCAGCTCCAGTGAATACCTCAAAGA 2565
Query 2532 TTCCGGCCTCTGGAAAACACCGGTTGGGGACATGAGCACGGTTTTGTCGCTGCAAATTCA 2591
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2566 CTCCGGCCTCTGGGAAACACCGGTTGGGGACATGAGCGTGGTTTTGTCGCTGCAAATTCA 2625
Query 2592 GACAAAATGTTCTGATTTGGTTGCAGAGACTCCTCCAGTCTTGTCTTGAGTCTCTCGTCT 2651
||||||||||||||||||| |||| ||||||||| | || |||||||||||||| |||
Sbjct 2626 GACAAAATGTTCTGATTTGTTTGCTGAGACTCCTGCTGT---GTCTTGAGTCTCTCTTCT 2682
Query 2652 TCTGTAGC-TTTAGCTCGAGTT 2672
|||||||| |||||||||||||
Sbjct 2683 TCTGTAGCATTTAGCTCGAGTT 2704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135902248587
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5