BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489122
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22670.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1543 0.0
AT5G22660.2 | Symbols: | FBD, F-box, Skp2-like and Leucine Ric... 235 7e-61
AT5G22700.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 165 9e-40
> AT5G22670.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:7538192-7539685 REVERSE LENGTH=1332
Length=1332
Score = 1543 bits (835), Expect = 0.0
Identities = 1071/1182 (91%), Gaps = 28/1182 (2%)
Strand=Plus/Plus
Query 4 TTTGACGTTTTAGAGTTCCGTGGTTACTATGAATTTGCGAGTGTTGTCCATGGCTTTCTA 63
||| |||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 163 TTTAACGTTTCAGAGTTCCATGGTTACTATGAATTTGCGCGTGTTGTCCATGGTTTTCTA 222
Query 64 GATATCC-CTAGGGAGACATGTATACACAAGCTTAAACTTGCTCTT-AATAGAAATCAGC 121
|||| || |||| |||||||| |||||||| || ||||||||| || || | ||| ||||
Sbjct 223 GATA-CCTCTAGAGAGACATGCATACACAAACTCAAACTTGCTTTTGAA-AAAAAACAGC 280
Query 122 GTGATCA-GTCTTACTTGACGCAGTGGATACACAATGCGGTTATGCTTGAAGTTCAAGAT 180
|||| | ||||||||||||||||||||| ||||||||||||| || | |||| ||| ||
Sbjct 281 ATGAT-AGGTCTTACTTGACGCAGTGGATCCACAATGCGGTTAAGCGTAAAGTACAACAT 339
Query 181 TTGGATATTTTATCATGTGGTTGGAGTTATTTAGGTAC-GGAGCTGATGCCCCTTAGCCT 239
|||| | ||| | || ||||||||||||||||| | ||||||||| |||| ||||||
Sbjct 340 TTGG--A---TAT-AGGTCGTTGGAGTTATTTAGGT-CAGGAGCTGATACCCCATAGCCT 392
Query 240 TTACACCTGTGAGACTCTTGTATCCTTGAAACTCCATTATGTGTCATTGCCTGATTTTGA 299
|||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 393 TTACACCTGTGAGACTCTGGTATCCTTGCGACTCCATAATGTGTCATTGCCTGATTTTGA 452
Query 300 TTATGTTTCTCTACCTCGTCTCAAGATC-ATGCATTTAGA-AGACAACATTTACCCTAAT 357
| |||||||||||||||||||||| | | ||||||||| | |||||||||||||||||||
Sbjct 453 TCATGTTTCTCTACCTCGTCTCAA-AACAATGCATTTA-ATAGACAACATTTACCCTAAT 510
Query 358 GATGCTCTGCTGGAGAATCTTATCTCATCTTGCCCAGTTCTTGAAGATTTAAATGTCTCT 417
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 511 GATGCTCTTCTGGAGAATCTAATCTCATCTTGCCCAGTTCTTGAAGATTTAAATGTCTCT 570
Query 418 AGAGATTTAGAGAATATCGTTAAGGTTTTACGAGTGTGTTCTCTGTCATTAAAGAGTCTC 477
|||||| ||||||| || |||||||||||||||||| |||||||||| ||||||||||||
Sbjct 571 AGAGATGTAGAGAACATTGTTAAGGTTTTACGAGTGCGTTCTCTGTCGTTAAAGAGTCTC 630
Query 478 ATACTTGTTCTCGATGGTGATCGG--T----ATATTGAGGATGATGGTTGGGAGGTTGTG 531
||||||| |||||||||||||||| | ||||||| |||||| ||||||||||||||
Sbjct 631 ATACTTGCTCTCGATGGTGATCGGTATGGGGATATTGAAGATGATAGTTGGGAGGTTGTG 690
Query 532 ATTGATGCTCCTAGACTCAGCTATTTGAGTCTTAGAGATGACCAGTCTAAAAGTTTCGTA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 ATTGATGCTCCTAGACTCAGCTATTTGAGTCTTAGAGATGACCAGTCTAAAAGTTTCGTA 750
Query 592 TTAAGCAGTTTGAGTTCACCTACCAAGGTAGATATTGATATCAGTTTCGAT-TCGGTGAG 650
||||| ||| ||| ||||||| ||||||||||||||||| | | ||||||| | ||||||
Sbjct 751 TTAAGTAGTGTGACTTCACCTGCCAAGGTAGATATTGATGTAACTTTCGATGT-GGTGAG 809
Query 651 AAGTGTATTGAGAAATGTCTCT-TTAAAGAGAAGTGTAGTGAGAAACTTCTTCACCAGGC 709
||||||||||| |||| || || |||| ||||||||||||||||||||||||||||||||
Sbjct 810 AAGTGTATTGAAAAATTTC-CTGTTAACGAGAAGTGTAGTGAGAAACTTCTTCACCAGGC 868
Query 710 TCTCGAGCGTAAGGGACATGACTATGAGTGGAACAACTTTGAAGGTCCTCTCTCGCTCCA 769
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 869 TCTCGAGCGTAAGGGACATGACTATGAGTGGAACAACTTTAAAGGTCCTCTCTCGCTACA 928
Query 770 TGAGACACGAACCGCTGCCACAGTTTCCTAACATGATCCAATTCTATGCGGTCTTCTATA 829
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 929 TGAGACACGAACCACTGCCTCAGTTTCCTAACATGATCCAATTCTATGCGGTCTTTTGTA 988
Query 830 ACTCTGATTTGGAAAAGCTACCAAACTTTCTTGAGAGCTGTCCAAATCTCAAATCTCTTG 889
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 989 ACTCTGATTTGGAAAAGTTGCCAAACTTTCTTGAGAGCTGTCCAAATCTCAAATCTCTTG 1048
Query 890 TACTGGAGCTGGAGGAATTTAAGAAGAATGAAATACTTATTCTCTCATCATCAATCCCAA 949
|| |||| ||||||| |||||||||||| || |||||||||||||||||||||| ||||
Sbjct 1049 TATTGGAACTGGAGGTATTTAAGAAGAACGACTTACTTATTCTCTCATCATCAATTCCAA 1108
Query 950 AATGTTTAAGATCATCCCTGGAGTACGTTGAGATTCATACACGGATAAGCGGAGCTGAAC 1009
||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1109 AATGTTTGAGATCATCTCTGGAGCACGTTGAGATTCATACACCGATAAGCGGAGCTGAAG 1168
Query 1010 CGGAAATGAAATTAGTAAAGTATTTCCTCGAGAATTCGGCAGTGCTCAAGAAGTTTATGC 1069
| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1169 CTGAAATGAAACTAGTAAAGTACTTCCTCGAGAATTCGGCAGTGCTCAAGAAGTTTACAT 1228
Query 1070 TGCGATTGGGTGGTAAAAGAATGGAGGAAGATTCTATCATCTTCAGGGAACTCCTGAGAT 1129
||| ||||||| |||| |||||||| ||||| ||||||||||||| ||||||| ||||||
Sbjct 1229 TGCAATTGGGTTGTAAGAGAATGGACGAAGAGTCTATCATCTTCAAGGAACTCTTGAGAT 1288
Query 1130 TTAGGAGATGTTCTGCTTCGTGTGAAGTTGTTGTTGAAGTTT 1171
||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1289 TTAGGAGATGTTCTGCTTCTTGTGAAGTTGTTGTTGAAGTTT 1330
> AT5G22660.2 | Symbols: | FBD, F-box, Skp2-like and Leucine Rich
Repeat domains containing protein | chr5:7536290-7537990
REVERSE LENGTH=1528
Length=1528
Score = 235 bits (127), Expect = 7e-61
Identities = 591/804 (74%), Gaps = 76/804 (9%)
Strand=Plus/Plus
Query 311 TACCTCGTCTCAAGATCATGCATTTAGAAGACAACATTTACCCTAATGATG-CTCTGCTG 369
||||| ||| ||| | |||||||||||||| || || || || ||| || || ||
Sbjct 607 TACCTAATCTTAAGGTGATGCATTTAGAAGAGAATATCTATTCTTATGCTGAGACT-ATG 665
Query 370 GAGAA-TCTTATCTCATCTTGCCCAGTTCTTGAAGATTTAAATG-TCTCTAGAGATTTAG 427
||||| | |||||||||| ||||| |||||||||||||||| || | | |||| || |||
Sbjct 666 GAGAAGT-TTATCTCATCATGCCCGGTTCTTGAAGATTTAACTGTTGT-TAGAAATGTAG 723
Query 428 A-GAA--TATC-GTTAAGGTTTTACGAGTGTGTTCTCTGTCATTAAAGAGTCTCATACTT 483
| ||| | | | ||||||||| | ||| | |||| |||| |||| ||||||| |||
Sbjct 724 ATGAAGCCA-CTGAGAAGGTTTTAAGGGTGAGCTCTCAGTCACTAAACAGTCTCAAACTC 782
Query 484 GTTCTCGAT-G------GTGATCGGTATATTGA-G-GA-TGATGGTTGGGAGGTTGTGAT 533
||| | ||| | ||| | |||||| ||| | | ||| | |||| ||||||| ||
Sbjct 783 GTTATTGATAGTTCCAAGTG-TTGGTATAATGATGATAGTGACGATTGGAAGGTTGTCAT 841
Query 534 TGATGCTCCT-AGACTCAG-CTATTTGAGTCTTAGAGATGACCAGTCTA-AAAGTTTCGT 590
|||||||||| || ||| | ||| | ||||||| |||||| ||||| | ||||| ||
Sbjct 842 TGATGCTCCTCAG-CTC-GTGTATCTAAGTCTTAAAGATGATCAGTC-AGTGAGTTTTGT 898
Query 591 -ATTAAGCAGTTTGAGTTCACCTACCAAGGTAGATATTGATATCAGTTTCGATTCG-GT- 647
| ||| || |||| ||||| || | |||| |||||| | ||||||| | | | ||
Sbjct 899 GA-TAAACAATTTGTGTTCATCTGCAAAGGCAGATATCAAGGTCAGTTT-TAAT-GTGTC 955
Query 648 -GAGAAGT-GTAT-TGAGAAATGTCTCTTTAAAGAGAAGTGTA-GT-GAG-AAACTTCTT 701
|| | | | || | || | | || || ||||||| | || | | ||| ||| |
Sbjct 956 CGATATTTGGGATCT-AG--AGGAGTCGTTCGAGAGAAG-CAATGTCG-GTAAATTTC-T 1009
Query 702 CACCAGGCTCTCGAGCGTAAGGGACATGACTATGAGTGGAACAACTTTGAAGGTCCTCTC 761
|||| ||||||| ||| |||||||||||||||| |||||||||||||||||| || | |
Sbjct 1010 CACCGGGCTCTCAAGCTTAAGGGACATGACTATTAGTGGAACAACTTTGAAGATCATTTG 1069
Query 762 TCGCTCCATG-AGACACGAACCGCTGCCACAGTTTCCTAACATGATC-CAATT-CTATGC 818
|| || | || || ||||| ||| |||| ||||||| |||||||| | | || | ||||
Sbjct 1070 TCACTACTTGAAG-CACGAGCCGATGCCTCAGTTTCGTAACATGA-CGCGGTTAC-ATGC 1126
Query 819 GGTCTTCTATAACTCTGATTTGGAAAAGCTACCAAACTTTCTTGAGAGCTGTCCAAATCT 878
| |||||| | ||||||||||| | | ||| | ||||||||||||||||||||||
Sbjct 1127 GAAATTCTATGTTTGTGATTTGGAAATGTTGCCATGCGTTCTTGAGAGCTGTCCAAATCT 1186
Query 879 CAAATCTCTTGTACTGGA-GCTGGA-GG--AATTT-AAGAA-GAATGAAATACTTATTCT 932
|||||| ||||| || || |||| | || || | || || ||| ||||| | | |||
Sbjct 1187 CAAATCACTTGT-CTTGAAGCTGAAAGGTGAAATGGAA-AATGAA-GAAAT-C--AGTCT 1240
Query 933 CTCATCATCAATCCCAAAATGTTTA-AGATCATCCCTGGAGTACGTTGAGATTCATAC-A 990
||||||||| | || || ||||| | |||| ||| ||| | ||||||||| |||| |
Sbjct 1241 ATCATCATCAGTGCCGAAGTGTTTGCA-ATCAAGCCTTGAGAATGTTGAGATT-ATACGA 1298
Query 991 CGGA--TAAGCGGAGCTGAACCGGAAATGAAATTAGT-AAAGTATTTCCTCGAGAATTCG 1047
| | || | | || || | || |||||| || | ||| |||||||| |||||||||
Sbjct 1299 CCAAACTATG-GAAG-TGGAGAAGAGATGAAACTA-TCAAAATATTTCCTTGAGAATTCG 1355
Query 1048 GC-AGTGCTCAAGAAGTTTATGCT 1070
| ||| ||||||||||||| |||
Sbjct 1356 -CTAGTCCTCAAGAAGTTTAAGCT 1378
> AT5G22700.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:7545516-7547595 REVERSE LENGTH=1583
Length=1583
Score = 165 bits (89), Expect = 9e-40
Identities = 408/555 (74%), Gaps = 50/555 (9%)
Strand=Plus/Plus
Query 367 CTGGAGAATCTT-ATCTCATCTTGCCCAGTTCTTGAAGATTTAAATG-TCTCTAGAGATT 424
|||||||| ||| |||||||| ||||| |||||||||||||||| | | | |||| |||
Sbjct 637 CTGGAGAA-CTTCATCTCATCATGCCCGGTTCTTGAAGATTTAACCGTTGT-TAGA-ATT 693
Query 425 -TAGAGA--AT-ATCGTTAAGGTTTTACGAGTGTGTTCTCTGTCA-TTAAAGAGTCTCAT 479
|||| | || | || ||| ||||||| ||| | ||| |||| || || |||||||
Sbjct 694 GTAGATATTATCACCGAGAAGATTTTACGGGTGCGCTCTAGGTCACTT-AACAGTCTCAA 752
Query 480 ACTTGTTCTCGAT-GGT-----GATCGGTATATTGA-G-GAT-GATG-GTTGGGAGGTTG 529
||| ||||| ||| | | | | ||| |||||| | || || | | ||| |||||
Sbjct 753 ACTCGTTCTTGATAGTTCCAACGGTTGGTTTATTGATGATATCGACGAG-TGGAAGGTTA 811
Query 530 TGATTGATGCTCCTAGACTCAGC-TATTTGAGTCTTAGAGATGACCAGTCTAAAAGTTTC 588
| |||||||||||| | || || ||| ||||||||| |||||| ||||| |||||
Sbjct 812 TCATTGATGCTCCTCGGCT-GGCGTATCTGAGTCTTAAAGATGATCAGTCGGCGAGTTTT 870
Query 589 GT-ATTAAGCAGTTTGAGTTCA-CCTACCAAGGTAGATATTGATATCAGTTTCGATTCGG 646
|| | |||||| |||| ||||| || | || | |||||| | | ||||| | | |
Sbjct 871 GTGA-TAAGCAATTTGGGTTCATCC-GCAAAAGCAGATATCAAGGTTAGTTT-TAAT--G 925
Query 647 TGAGAAGTGTA-TTGAGA---A-ATGTCTCTTTAAAGAGAAGTGTA-G-TGAG-AAACTT 698
||| | | || ||| || | |||| | || ||||||| | | || | ||| ||
Sbjct 926 TGA-ACG-ATATTTGGGATCTACCTGTCACGTTCGAGAGAAG-CAATGTTG-GTAAA-TT 980
Query 699 -CTTCACCAGGCTCTCGAGCGTAAGGGACATGACTATGAGTGGAACAACTTTGAAGGTCC 757
| ||||| ||||||| ||| |||||||| | ||||| |||||||||||||||| | ||
Sbjct 981 AC-TCACCGGGCTCTCAAGCATAAGGGACCTAACTATAAGTGGAACAACTTTGATGATCA 1039
Query 758 TCTCTCGCTCCATG-AGACACGAACCGCTGCCACAGTTTCCTAACATGATCCAATTCTAT 816
| | || || | || || ||||||||| |||| |||||| ||||||| | | || ||
Sbjct 1040 TTTGTCACTACTTGAAG-CACGAACCGATGCCTCAGTTTTGTAACATGGTGCGGTTAAAT 1098
Query 817 GCG-GTCTTCTATAACTCTGATTTGGAAAAGCTACCAAACTTTCTTGAGAGCTGTCCAAA 875
||| | |||||| | | ||||||||||| | | ||| | |||||||||||||||||||
Sbjct 1099 GCGAG-ATTCTATGATTGTGATTTGGAAATGTTGCCATGCGTTCTTGAGAGCTGTCCAAA 1157
Query 876 TCTCAAATCTCTTGT 890
||||||||| |||||
Sbjct 1158 TCTCAAATCCCTTGT 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5