BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489123
Length=2254
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22740.1 | Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 | cellu... 3284 0.0
AT1G23480.1 | Symbols: ATCSLA03, CSLA03, ATCSLA3, CSLA3 | cellu... 359 7e-98
> AT5G22740.1 | Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 | cellulose
synthase-like A02 | chr5:7554928-7560073 REVERSE LENGTH=2263
Length=2263
Score = 3284 bits (1778), Expect = 0.0
Identities = 2135/2295 (93%), Gaps = 73/2295 (3%)
Strand=Plus/Plus
Query 1 TTAAACCACAtttctccttctggctctctctcttcctaagttttctctctctttAAAACT 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1 TTAAACCACATTTCTCCTTCTGGCTCTCTCTCTTCCTAAGTTTCCTCTCTCTTTAGAACT 60
Query 61 ATAGAGAGAGAAAAGCTTCCA-TTTTCTCAAGGCAAtctctctctctc--CATCATTC-C 116
||||||||||||||| |||| |||||||||||||||||||||||||| | ||| || |
Sbjct 61 GTAGAGAGAGAAAAGCCTCCATTTTTCTCAAGGCAATCTCTCTCTCTCTGCCTCA-TCTC 119
Query 117 ATAAACCCATT--------A---CA-C--A-A-A-AG-----C-CC-GCCATTGTTACAC 152
||||||||||| | || | | | | || | || ||||||||||||
Sbjct 120 ATAAACCCATTACACCAAAACCTCATCGTAGAGAGAGAAACACACCAACCATTGTTACAC 179
Query 153 TCAAAGAGAAGAGAAGAGACAAGGAAAAAATGGAAGGTGTATCACCAAAGTTTGTGTTGC 212
|| |||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct 180 TCTAAGAGAAGAGAAGAGAGAAGG-AAAAATGGACGGTGTATCACCAAAGTTTGTGTTGC 238
Query 213 CGGAGACATTCGACGGTGTGAGGATGGAGATCACAGGGCAACTAGGCATGATCTGGGAGC 272
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 CGGAGACATTCGACGGCGTGAGGATGGAGATCACAGGCCAACTAGGCATGATCTGGGAGC 298
Query 273 TTGTAAAAGCACCAGTGATTGTCCCTCTTCTTCAATTAGCTGTTTACATCTGTTTGCTTA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTGTAAAAGCACCAGTGATTGTCCCTCTTCTTCAATTAGCTGTTTACATCTGTTTGCTTA 358
Query 333 TGTCTGTCATGCTTTTATGTGAGAGGGTTTACATGGGAATCGTCATCGTCCTTGTCAAAC 392
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 TGTCTGTCATGCTTTTATGTGAGAGGGTTTACATGGGAATCGTCATCGTCCTCGTCAAAC 418
Query 393 TCTTCTGGAAAAAACCAGACAAACGTTACAAATTCGAGCCCATTCACGATGATGAAGAGC 452
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TCTTCTGGAAAAAACCAGACAAACGTTACAAGTTCGAGCCCATTCACGATGATGAAGAGC 478
Query 453 TTGGCAGCTCCAATTTCCCAGTCGTCCTCGTACAAATCCCCATGTTCAACGAACGAGAGG 512
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGGTAGCTCCAATTTCCCCGTCGTCCTCGTACAAATCCCCATGTTCAACGAACGAGAGG 538
Query 513 TTTATAAGCTATCAATAGGAGCGGCGTGTGGACTCTCTTGGCCGTCCGATCGTCTCGTGA 572
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 539 TTTATAAGCTATCAATAGGAGCGGCGTGTGGACTTTCCTGGCCGTCCGATCGTCTCGTGA 598
Query 573 TTCAAGTGTTAGATGACTCAACAGATCCTACTGTTAAGCAAATGGTGGAAATGGAGTGCC 632
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 599 TTCAAGTGTTAGATGACTCTACAGATCCTACTGTTAAGCAAATGGTGGAAGTGGAGTGTC 658
Query 633 AAAGATGGGCAAGTAAAGGAATCAATATTAGGTATCAAATAAGAGAAAATAGAGTTGGTT 692
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 AAAGATGGGCAAGTAAAGGAATCAATATTAGGTATCAAATAAGAGAGAATAGAGTTGGTT 718
Query 693 ACAAAGCCGGTGCTTTAAAGGAAGGACTCAAACGTAGTTATGTCAAACATTGCGAGTATG 752
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 ACAAAGCCGGTGCTTTAAAGGAAGGACTCAAACGTAGTTATGTCAAGCATTGCGAGTATG 778
Query 753 TTGTCATCTTCGACGCCGATTTTCAGCCGGAACCGGATTTTCTTCGCCGTAGCATTCCTT 812
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 779 TTGTCATCTTCGACGCCGATTTTCAGCCCGAACCTGATTTTCTTCGCCGTAGCATTCCTT 838
Query 813 TTCTCATGCACAATCCCAACATTGCCTTGGTTCAGGCCCGATGGCGGTTCGTAAATTCTG 872
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 839 TCCTCATGCACAATCCCAACATTGCCTTGGTTCAGGCTCGATGGCGGTTCGTAAATTCTG 898
Query 873 ATGAGTGCTTATTGACAAGGATGCAAGAAATGTCGTTGGATTACCATTTCACTGTTGAGC 932
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 899 ATGAGTGCTTATTGACGAGAATGCAAGAAATGTCATTGGATTACCATTTCACTGTTGAGC 958
Query 933 AAGAAGTCGGTTCATCGACACATGCTTTTTTCGGCTTCAACGGAACCGCCGGAATCTGGA 992
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 AAGAAGTGGGTTCATCAACACATGCTTTTTTCGGCTTCAACGGAACCGCCGGAATATGGA 1018
Query 993 GAATAGCGGCGATAAATGAAGCCGGCGGGTGGAAAGATAGGACCACCGTGGAAGATATGG 1052
|||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 1019 GAATAGCGGCGATAAATGAAGCTGGTGGGTGGAAAGATCGGACCACCGTGGAAGATATGG 1078
Query 1053 ATCTCGCCGTCCGAGCTAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAGG 1112
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATCTCGCCGTCCGAGCAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAGG 1138
Query 1113 TGAAAAGTGAACTTCCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGATGGTCTT 1172
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGAAAAGTGAGCTTCCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGATGGTCTT 1198
Query 1173 GTGGACCTGCAAATCTCTTTAGGAAAATGGTTATGGAGATCATAAGAAACAAGAAAGTGA 1232
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1199 GTGGACCTGCAAATCTCTTTAGGAAAATGGTTATGGAGATCGTAAGAAACAAGAAAGTGA 1258
Query 1233 GATTCTGGAAGAAAGTGTATGTGATCTACAGCTTCTTCTTTGTGAGGAAAATCATTGCAC 1292
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1259 GATTCTGGAAGAAAGTGTACGTGATATACAGCTTCTTCTTTGTGAGGAAAATCATTGCAC 1318
Query 1293 ATTGGGTCACATTTTGTTTCTACTGCGTTGTTCTTCCTCTTACCATCCTCGTCCCCGAAG 1352
|||||||||||||||||||||||||||||||||||||||| || || |||||||| || |
Sbjct 1319 ATTGGGTCACATTTTGTTTCTACTGCGTTGTTCTTCCTCTCACAATTCTCGTCCCGGAGG 1378
Query 1353 TTAAAGTTCCGATTTGGGGCTCCGTTTATATCCCTTCCATCATCACTATCCTCAACTCCG 1412
||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct 1379 TTAAAGTTCCGATTTGGGGTTCGGTTTATATCCCATCCATCATCACTATCCTCAATTCCG 1438
Query 1413 TCGGTACTCCAAGGTCGATTCATCTGCTGTTCTATTGGATTCTATTTGAGAATGTGATGT 1472
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1439 TCGGTACTCCAAGGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGT 1498
Query 1473 CGCTGCACCGGACAAAGGCCACTCTCATTGGTCTCTTTGAGGCTGGAAGGGCTAACGAAT 1532
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1499 CGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCTAACGAGT 1558
Query 1533 GGGTCGTGACTGCTAAGCTTGGAAGCGGTCAGAGTGCTAAAGGAAACACAAAAGGGCTCA 1592
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 1559 GGGTAGTGACTGCTAAGCTTGGAAGCGGTCAGAGCGCTAAAGGAAACACTAAAGGGATCA 1618
Query 1593 AAAGGTTCCCAAGAATCTTCAAATTGCCTGATCGATTGAATACATTGGAGCTTGGATTTG 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AAAGGTTCCCAAGAATCTTCAAATTGCCTGATCGATTGAATACATTGGAGCTTGGATTTG 1678
Query 1653 CGGCGTTCTTGTTCGTGTGTGGATGCTATGACTTTGTGCACGGGAAGAACAATTACTTCA 1712
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CGGCTTTCTTGTTCGTGTGCGGATGCTATGACTTTGTGCACGGGAAGAACAATTACTTCA 1738
Query 1713 TCTACTTGTTTCTTCAGACAATGTCTTTCTTCATCAGTGGGCTTGGCTGGATCGGGACTT 1772
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1739 TCTACCTGTTTCTTCAGACAATGTCTTTCTTCATCAGTGGGCTGGGCTGGATCGGGACTT 1798
Query 1773 ATGTCCCGAGTTAGTAGAGTTGTGTTGTTACAGGGAGAAAAGAGAAGGTTATTAATTTTT 1832
||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||
Sbjct 1799 ATGTCCCGAGTTAGTAG--TTGTGTTGTTTCAGAGAGAAAAGAGAATGTTATTAATTTT- 1855
Query 1833 CTGGAGAAATAAAGACAATTTT-A---AA-TGACAAAGGAAAATTGATAGGGGAGATAGA 1887
|| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 1856 CTTGAGAAATAAAGACAATTTTCATTGAAATGACAAAGGAAAATTGATAGGGGAGATAGA 1915
Query 1888 GACGTACCGGTAACAA---GTAGGAAGAAAGGAGA---CTTTTATCAAAAGACAAGGAAA 1941
|||||||||||||||| |||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1916 GACGTACCGGTAACAACAAGTAGGAAGAAAGGAGAAGACTTTTATCAAA-GACCAGGAAA 1974
Query 1942 GAGGAGAAACTCCGAAGTGtttcttttgatttattttcaatttttctgtgttttatttac 2001
|||||||| |||| ||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1975 GAGGAGAAGCTCC-AAGGGTT-CTTTTGATTTATTTTTAATTTTTCTGTGTTTTATTTA- 2031
Query 2002 aaatatttagctatgggatttatttGTGATTCAGTTATTGTGAGACTTCAAtttttgttc 2061
||| ||||||||||||| ||||||||||| |||||||| || |||||| ||||
Sbjct 2032 ---TAT--AGCTATGGGATTT----GTGATTCAGTTGTTGTGAGATTTTAATTTTCGTTC 2082
Query 2062 tttctttttctttttcttttcttggtttttgggttttttttt-tttt-aaagtgttagtt 2119
||| ||||| | ||| | ||||||||||| |||||| |||| |||||||||||
Sbjct 2083 TTTGTTTTT-TATTT-T------GGTTTTTGGGTATTTTTTCGTTTTGAAAGTGTTAGTC 2134
Query 2120 ttttttttcttttgttttttATGATTTAGAATTCAAGGTTCTGCTTGAGCTACAAGTGTT 2179
||||| || || |||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 2135 TTTTTGTT-TT--GTTTTT-ATGATTTAGAATTCAAGATTCTGCGTGAGCTACAAGTGTT 2190
Query 2180 TAGATTGATGCAAGGGTTCAAAATCCCTAGTTGTCATCAACAGTGTATCCATTTTATAGT 2239
|||||||||||| |||||||||| ||| ||||||||||||| | |||||||||||||||
Sbjct 2191 -AGATTGATGCAAAGGTTCAAAATTCCTTGTTGTCATCAACAAT-TATCCATTTTATAGT 2248
Query 2240 AATTGATTTACAGTC 2254
|||| ||||||||||
Sbjct 2249 AATTAATTTACAGTC 2263
> AT1G23480.1 | Symbols: ATCSLA03, CSLA03, ATCSLA3, CSLA3 | cellulose
synthase-like A3 | chr1:8333020-8336385 FORWARD LENGTH=2015
Length=2015
Score = 359 bits (194), Expect = 7e-98
Identities = 822/1116 (74%), Gaps = 80/1116 (7%)
Strand=Plus/Plus
Query 469 CCCAGTCGTCCTCGTACAAATCCCCATGTTCAACGAACGAGAGGTTTATAAGCTATCAAT 528
|||| | || ||| | || ||||| |||| ||| ||| |||||||| | || |||| ||
Sbjct 546 CCCAATGGTTCTCATTCAGATCCCAATGTACAATGAAAAAGAGGTTTGTCAGTTATCTAT 605
Query 529 AGGAGCGGCGTGTGGACTCTCTTGGCCGTCCGATCGTCTCG-TGA-TTCAAGT-GTTAGA 585
|||||| || ||| |||| |||||||| | ||||| | | | | ||||||| || ||
Sbjct 606 AGGAGCAGCCTGTAGACTTTCTTGGCCATTGGATCGAAT-GAT-AGTTCAAGTACTT-GA 662
Query 586 TGACTCAACAGATCCTA-CT-GTTAAGCAAATGGTGGAAAT--GGAGTGCCA-AAGATGG 640
||| || |||||||| | || | |||| || |||| | ||| ||| || | || ||||
Sbjct 663 TGATTCCACAGATCC-AGCTAG-TAAGGAATTGGT-G-AATGCGGAATGTGATAA-ATGG 717
Query 641 GCAAGTAAAGGAATCAATATTAGGTATCA-A-ATAAGAGAAAATAGAGTTGGTTACAAAG 698
|| || ||||| || || | || | ||| | || ||||| || ||| |||| |||||||
Sbjct 718 GCGAGGAAAGGTATAAACA-TA-ATGTCAGAGATTAGAGACAACAGAATTGGATACAAAG 775
Query 699 CCGGTGCTTTAAAGGAAGGACTCAAACGTAGTTATGTCAAACATTGCGAGTAT-GTTGTC 757
| || || ||||||| |||| | | | | ||||| ||||| ||||| | | || | |
Sbjct 776 CAGGAGCATTAAAGGCAGGAATGATGCACAACTATGTGAAACAATGCGAAT-TCGTCGCC 834
Query 758 ATCTTCGACGCCGATTTTCAGCCGGAACCGGATTTTCTTCG-CCGTAGCATTCCTTTTCT 816
|| ||||| || ||||||||||| || || || |||||| | || | ||||||||||||
Sbjct 835 ATTTTCGATGCTGATTTTCAGCCTGATCCTGACTTTCTT-GAACGAACCATTCCTTTTCT 893
Query 817 CATGCACAATCCCA--ACAT-TGC-CTTGGTTC-AGGCCCGATGGCGGTTCGTAAATTCT 871
|| ||||| ||| | || | | ||| |||| | | ||| ||| ||| || ||| |
Sbjct 894 TATTCACAA--CCATGAAATCT-CTCTT-GTTCAATG-CCGTTGGAAGTTTGTGAATGCA 948
Query 872 GATGAGTGCTTATTGACAAGGATGCAAGAAATGTCGTTGGATTACCATTTCACT-GTTGA 930
| ||||||||| ||||||| |||||||| ||||| | | |||||||| | | |||
Sbjct 949 AACGAGTGCTTAATGACAAGAATGCAAGAGATGTCACTAAACTACCATTT-TGTGGCTGA 1007
Query 931 GCAAGAAGTC-GGTTCATCGACACATGCTTT-TTTCGGCTTCAACGGAACCGCCGGAATC 988
||||||| || || || || | ||||||||| ||| || ||||| |||||||| || |
Sbjct 1008 GCAAGAA-TCTGGATCTTCAATACATGCTTTCTTT-GGATTCAATGGAACCGCGGGTGTA 1065
Query 989 TGGAGAATAGCGGCGATAAATGAAGCCGGCGGGTGGAAAGATAGGACCACCGTGGAAGAT 1048
|||||||| || || |||| ||||| || || ||||||||| | || ||||| ||||||
Sbjct 1066 TGGAGAATCGCAGCTTTAAACGAAGCTGGAGGATGGAAAGATCGAACAACCGTAGAAGAT 1125
Query 1049 ATGGATCTCGCCGTCCGAGCTAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTT 1108
|||||| | || || ||||| |||||| || ||||||||| |||| || ||| | |
Sbjct 1126 ATGGATTTAGCAGTAAGAGCTTGTCTTCATGGTTGGAAATTTGTCTATGTCCATGA-CGT 1184
Query 1109 C-AGGTGAAAAGTGAACTT-CCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGAT 1166
| ||||||||| |||| || |||||||| || | ||| | | | ||||||||||||||||
Sbjct 1185 CGAGGTGAAAAATGAA-TTGCCAAGTACATTCAAAGCATACAGGTTTCAGCAACATAGAT 1243
Query 1167 GGTCTTGTGGACCTGCAAATCTCTTTAGGAAAATGGTTATGGAGATCATA-AGAAACAAG 1225
||||||||||||| || ||||| | ||||| ||| ||||| ||| || |||| ||||
Sbjct 1244 GGTCTTGTGGACCAGCTAATCTATGGAGGAAGATGACAATGGAAATCTTACAGAA-CAAG 1302
Query 1226 AAAGTGA-GATTCTGGAAGAAAGTGTATGTGATCTACAGCTTCTTCTTTGTGAGGAAAAT 1284
|||||| | |||||||||| ||||| | || |||| |||||||| | ||||| ||
Sbjct 1303 AAAGTGTCGGC-CTGGAAGAAATTGTATCTCATATACAATTTCTTCTTCATAAGGAAGAT 1361
Query 1285 CATTG--CACAT-TGGGTCACATTTTGT-TTCTACTG-CGTTGTTCTT-CCT-CTTACCA 1337
| | ||||| | |||||||| || |||||||| | | | | || || | ||
Sbjct 1362 TGTAGTACACATCT---TCACATTT-GTCTTCTACTGTC-T-GATATTACCAACA-ACTG 1414
Query 1338 TCCTCGTCCCCGAAGTTA-AAGTTCCGATTTGGGGCTCC-GTTTATATCCCTTCCATCA- 1394
| || |||| || | | ||||||| | |||| | | |||||| | ||| | | ||
Sbjct 1415 TGCTATTCCCTGA-GCTCCAAGTTCCTAAATGGG-CAACTGTTTATTTTCCTACTA-CAA 1471
Query 1395 TCACTATCCTCAACTCCGTCGGTACTCCAAGGTCGATTC-ATCTGCT-GTTCTATTGGAT 1452
|||||||||| ||| | ||| ||| || | || | || |||| || || || ||||||
Sbjct 1472 TCACTATCCTTAACGCAATCGCTACACCTCGATC-ACTCCATCTTCTTGT-CTTTTGGAT 1529
Query 1453 TCT-ATTTGAGAATGTGATGTCGCTGCACCGGACAAAGGCCAC-TCTCATTGG-TCT-CT 1508
|| ||| |||||||| |||||| |||| || ||||| || || | |||| || | | ||
Sbjct 1530 -CTTATTCGAGAATGTAATGTCGATGCATCGCACAAAAGCGACAT-TCATCGGGT-TACT 1586
Query 1509 TTGAGGCTGGAAGGGCTAACGAATGGGTCGTGACTG 1544
||||| ||| ||| |||||||||||| || ||||
Sbjct 1587 A-GAGGCAGGACGGGTTAACGAATGGGTTGTTACTG 1621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111846814260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5