BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489131
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22792.1 | Symbols: | pseudogene of F-box family protein | ... 915 0.0
AT2G32470.1 | Symbols: | F-box associated ubiquitination effec... 163 2e-39
AT5G22791.2 | Symbols: | F-box family protein | chr5:7603500-7... 108 8e-23
> AT5G22792.1 | Symbols: | pseudogene of F-box family protein
| chr5:7606735-7607667 REVERSE LENGTH=609
Length=609
Score = 915 bits (495), Expect = 0.0
Identities = 573/610 (94%), Gaps = 8/610 (1%)
Strand=Plus/Plus
Query 1 GACGTCCATGCTCGTCTAGGATACGATCCAGTCGAAGATCAATACAAAGTGTTGTGTGTG 60
|||||||| || |||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 7 GACGTCCAGGCACGTCTAGGGTACGATCCAGTGGAAGATCAATACAAAGTGCTGTGTGTG 66
Query 61 ATGATGTT-CGATGGCTACGGCCGCGGTGGGAATAAAGACATAGAACAGGAGCATTTCGT 119
|||||||| || | |||||||||||| | || |||||||||||||||||||||||||||
Sbjct 67 ATGATGTTCCG-TCGCTACGGCCGCGAT-GG--TAAAGACATAGAACAGGAGCATTTCGT 122
Query 120 TATCACACTGAGATCTCAACAAAAAGAGTGGAGAAAGATTGAAGTCACCGGAGATTCTTA 179
| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 123 TTTCACTCTGAGATCTCAACAAAAAGAGTGGAGAAAGATTGACGTCACCGGAGATTCTTA 182
Query 180 CACAGATGTCCAAGGAGGAATATGCATCGATGGTGCTATATACTATGGAGGTGTTGGACA 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 183 CACAGATGTCCAAGGAGGAATATGCATCGATGGTGCTATATACTATGGAGGAGTTGGACA 242
Query 240 CAAAATGTTAGCTAGATTTGATGTTAGATCCGAGAAAGTGGAGTTTATTAAAACACAGAA 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CAAAATATTAGCTAGATTTGATGTTAGATCCGAGAAAGTGGAGTTTATTAAAACACAGAA 302
Query 300 AGACGATATAGTAAACGTTTATCGTTGGACTTTTATAAACCACCAAGGAAAGTTAGGAGG 359
|||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||
Sbjct 303 AGACGAAATAGTAAACGTTTATAGTTGGACTTTTATAAATCACCAAGGAAAATTAGGAGG 362
Query 360 AATAGAGGACAAGAGACGACTATCTTCTCCGGGAGAGATTCACACTGGAGAAGTTATGTT 419
|||||||| | ||| ||||||||||||| ||||||||| | || ||||||||||||||
Sbjct 363 AATAGAGG-GGA-AGA-GACTATCTTCTCCAGGAGAGATTTATACCGGAGAAGTTATGTT 419
Query 420 GGTTTCTGATCGTTTAGAATCATCTAAACCTTTCTCTGTTTTCTATTACGATCCGATCAA 479
||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 420 GGTTTCTTCTCGTTTAGAATCATCTAAACCTTTTTCTGTTTACTATTACGATCCGATCAA 479
Query 480 AGACAGTTTCAGAAGTGCGGAAGTTGAAGGAATTGCGGACCATGAGTTTAGACGTATCCA 539
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 AGAGAGTTTCAGAAGTGCGGAAGTGGAAGGAATTGCGGACCATGAGTTTAGACGTATCCA 539
Query 540 CGGAATTGGTAAGCGTGCTCGTGAGATGTTGTGTTTTCCAGGTCATATTGAGAATATCAT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 CGGAATTGGTAAGCGTGCTCGTGAGATGTTGTGTTTTCCAGGTCATATTGAGAACATCAT 599
Query 600 GTTCTTGTAA 609
||||||||||
Sbjct 600 GTTCTTGTAA 609
> AT2G32470.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:13787172-13788894 FORWARD LENGTH=1723
Length=1723
Score = 163 bits (88), Expect = 2e-39
Identities = 232/297 (78%), Gaps = 28/297 (9%)
Strand=Plus/Plus
Query 13 CGTCTAGGATACGATCCAGTCGAAGATCAATACAAAGTGTTG-T-G-TGTGATGATGTTC 69
||||| |||||||||||||| ||||||||||||||||||||| | | |||||||||||||
Sbjct 578 CGTCTCGGATACGATCCAGTGGAAGATCAATACAAAGTGTTGTTGGTTGTGATGATGTTC 637
Query 70 GATGGCTACGGCCGCGGTGGGAATAAAGACATAGAACAGGAGCATTTCGTTATCACACTG 129
|| ||||| | | | | ||| | ||| ||||| |||||||| |||| ||
Sbjct 638 GACGGCTA---------T-AG-A-ACAGATACAGATCAGGAATATTTCGTTTTCACGCTA 685
Query 130 AGATCTCAACAAAAAGAGTGGAGAAAGATTGAAGTCACC---GGAGATTCTTA-CACAGA 185
|| |||||||||||||||||||||||||||||| |||| ||||| |||| ||||
Sbjct 686 AGTTCTCAACAAAAAGAGTGGAGAAAGATTGAAAACACCACTGGAGAAACTTATCACA-- 743
Query 186 TG-TCCAAGGAGGAATATGCATCGATGGTGCTATATACTATGGAGGTGTTGGACACAAAA 244
|| || | ||||| |||||||| |||||||||||||||||||| ||| || ||| ||
Sbjct 744 TGGTCTATGGAGGGATATGCATAGATGGTGCTATATACTATGG-GGT-TTC-ACAGTCAA 800
Query 245 TGTTAGCTAGATTTGATGTTAGATCCGAGAA-AGTGGAGTTTATTAAAACACA-GAA 299
| ||| || ||| |||||||| || ||||| | |||| || ||| || |||| |||
Sbjct 801 TAATAGTTAAATTCGATGTTAGGTCTGAGAAGA-TGGAATTCATTCAAGCACACGAA 856
> AT5G22791.2 | Symbols: | F-box family protein | chr5:7603500-7604822
REVERSE LENGTH=1198
Length=1198
Score = 108 bits (58), Expect = 8e-23
Identities = 145/184 (79%), Gaps = 17/184 (9%)
Strand=Plus/Plus
Query 115 TTCGTTATCACACTGAGATCTCAACAAAAAGAGTGGAGAAAGATTGA-AGTCACC---G- 169
|||||| |||| || || ||||||||||||||||||||||||||||| | | ||| |
Sbjct 499 TTCGTTTTCACGCTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGACA-TAACCAAAGA 557
Query 170 -GA-GATTCTTACA-C-AGATGTCCAAGGAGGAATATGCATCGATGGTGCTATATACTAT 225
|| ||| ||||| | | ||| |||| || || ||||| |||||||||||| |||||
Sbjct 558 AGAAGATCCTTACCGCCACATGA--AAGGTGGGATTTGCATAGATGGTGCTATACACTAT 615
Query 226 GGAGGTGTTGGACACAAAATGTTAGCTAGATTTGATGTTAGATCCGAGAA-AGTGGAGTT 284
|||| | ||| | | |||| | ||||||||||||||||||| ||||||| | || ||||
Sbjct 616 GGAGTT-TTGTATAGAAAAA-T-AGCTAGATTTGATGTTAGAACCGAGAAGATTG-AGTT 671
Query 285 TATT 288
|||
Sbjct 672 CATT 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5