BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489136
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22830.1 | Symbols: ATMGT10, GMN10, MGT10, MRS2-11 | magnesi... 2342 0.0
> AT5G22830.1 | Symbols: ATMGT10, GMN10, MGT10, MRS2-11 | magnesium
(Mg) transporter 10 | chr5:7627597-7630993 FORWARD LENGTH=1736
Length=1736
Score = 2342 bits (1268), Expect = 0.0
Identities = 1419/1490 (95%), Gaps = 17/1490 (1%)
Strand=Plus/Plus
Query 1 tttttttGTAAAATTATCC-TCAAGCTAAAATTCTCCATAACCAAAGCTTC--C-TTCCA 56
|||||| |||||||||||| | ||||||||| ||||||||||||||||||| | |||||
Sbjct 3 TTTTTTGGTAAAATTATCCTTAAAGCTAAAAATCTCCATAACCAAAGCTTCTTCGTTCCA 62
Query 57 CCAGCACCAAACCAACAATGGCGTTAACTCCAATTCCTTCAACATTCACTTCACTCATCA 116
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 63 CCAGCACCAAACCAACAATGGCGTTAACTCCAATTCCTTCAACATTCACTTCTCTCTTCA 122
Query 117 A-Tatctccgatcattctccatatccatctccatctctccattatcttcttcctggatct 175
| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ACT-TCTCCGATCACTCTCCATATCCATCTCCATCTCTCCATTATCTTCTTCCTGGATCT 181
Query 176 tctccttccttttctctccaCTTATCGGC-TCTGAGTAGAACTCCGATCTATTTCGAGGC 234
|||||||||||||||||||| ||||| || | ||||||||||||||||||| ||||||||
Sbjct 182 TCTCCTTCCTTTTCTCTCCAGTTATCTGCGT-TGAGTAGAACTCCGATCTACTTCGAGGC 240
Query 235 ACTTAAAGTTTTATCGAGATCGAAATGTTTCGCCAAGTCTCCCACAACTGCCGAGGATTT 294
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 241 ACTTAAAGTTTTATCGAGATCGAAATGTTTCGCCAAGTCTCCGACAACCGCCGAGGATTT 300
Query 295 CGTCGGAGATTACGAAACCCTAAACGTTA--G-CGACGATGATGGTAGTGACAGTAATAG 351
|||||| ||||||||| |||| ||||||| | |||||| ||||||||||||||||||||
Sbjct 301 CGTCGGCGATTACGAATCCCTTAACGTTAGCGACGACGACGATGGTAGTGACAGTAATAG 360
Query 352 TAGTGATGGAGATAAC---GGAGGAAGAGAGGATTTAAAGAAGATCGAttcttcttcttc 408
|||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 361 TAGTGATGGAGATAACGGAGGAGGAAGAGATGATTCAAAGAAGATCGATTCTTCTTCTTC 420
Query 409 ttc-t--tcAAGTGATTCTACATCGCTAGGAATTCGTGAACCGGTTTATGAGGTTGTGGA 465
||| | |||||||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 421 TTCTTCATCAAGTGACTCTACGTCTCTGGGAATTCGTGAACCGGTTTATGAGGTTGTGGA 480
Query 466 AGTGAAGGCGACTGGAGCAATATCTACAAGGAAGATTAACAGACGACAGCTGCTCAAATC 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 AGTGAAGGCGACTGGAGCAATATCTACAAGGAAGATTAACAGACGACAGCTGCTTAAATC 540
Query 526 CAGTGGTCTTCGTCCGAGAGATATCCGAAGCGTTGATCCTTCGTTGTTTATGACAAACTC 585
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 CAGTGGTCTTCGTCCAAGAGATATACGAAGCGTTGATCCTTCGTTGTTTATGACAAACTC 600
Query 586 AGTGCCATCTTTATTGGTCCGTGAACATGCGATTTTGCTAAATTTGGGCTCCCTGAGAGC 645
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 AGTGCCATCTCTATTGGTCCGTGAACATGCGATTCTGCTAAATTTGGGCTCCCTGAGAGC 660
Query 646 AATAGCAATGCGAGACCGTGTCCTTATATTTGATTATAACCGGAGAGGAGGAAGAGCTTT 705
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATAGCCATGCGAGACCGTGTCCTTATATTTGATTATAACCGGAGAGGAGGAAGAGCTTT 720
Query 706 TGTAGATACATTGATGCCTCGGCTTAACCCAAGAAGTATGAATGGAGGACCCTCTATGCC 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTAGATACATTGATGCCTCGGCTTAACCCAAGAAGTATGAATGGAGGACCCTCTATGCC 780
Query 766 ATTTGAATTAGAGGTTGTTGAATCAGCGCTTATATCAAGGATACAACGATTAGAGCAAAG 825
||||||| |||||| ||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 781 ATTTGAACTAGAGGCTGTTGAATCGGCGCTAATCTCAAGGATACAACGATTAGAGCAAAG 840
Query 826 GCTTATGGACATTGAACCCCGTGTCCAAGCTCTTCTTGAAGTTTTGCCCAATCGCTTAAC 885
||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 841 GCTTATGGACATTGAACCCCGTGTCCAAGCTCTACTTGAGGTTTTACCCAACCGCTTAAC 900
Query 886 TGCTGATATATTGGAGGAACTTCGTATTAGCAAACAAAGACTGGTTGAATTGGGCTCCAG 945
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 TGCCGATATATTGGAGGAACTTCGTATTAGCAAACAAAGACTGGTTGAATTGGGCTCCCG 960
Query 946 AGCTGGAGCTCTTAGACAAATGCTCCTGGATCTTTTAGAGGATCCCCATGAAATACGCCG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGCTGGAGCTCTTAGACAAATGCTCCTGGATCTTTTAGAGGATCCCCATGAAATACGCCG 1020
Query 1006 CATATGCATCATGGGAAGAAATTGCACTCTTAGAAGAGGAGACGATGATTTGGAGTGTAC 1065
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1021 CATATGCATCATGGGAAGAAATTGCACACTTAGAAGAGGAGACGATGATTTGGAGTGTAC 1080
Query 1066 GTTACCCTCAGACAAGCTGATTGCCGAGGAAGAAGAGGAGGAAATTGAAATGCTCTTGGA 1125
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1081 ATTACCCTCAGATAAGCTGATTGCTGAGGAAGAAGAGGAGGAAATCGAAATGCTCTTGGA 1140
Query 1126 GAACTATCTGCAAAGATGTGAGTCATGCCATGGACAAGCAGAAAGACTTCTGGATTCTGC 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAACTATCTGCAAAGATGTGAGTCATGCCATGGACAAGCAGAAAGACTTCTGGATTCTGC 1200
Query 1186 AAAGGAAATGGAAGACTCAATTGCTGTCAATCTAAGTTCTCGGAGGCTTGAGGTCAGCAG 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAAGGAAATGGAAGACTCAATTGCTGTCAATCTAAGTTCTCGGAGGCTTGAGGTCAGCAG 1260
Query 1246 ATTCGAGCTGCTTCTTCAGGTCGGTACATTCTGTGTTGCAGTTGGTGCTCTCATCGCAGG 1305
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1261 GTTCGAGTTGCTTCTTCAGGTCGGTACATTTTGTGTTGCAGTTGGTGCTCTCATCGCAGG 1320
Query 1306 TATATTCGGCATGAACTTGAGGTCCTATCTTGAAGAACAAGCTTCTGCATTCTGGCTAAC 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TATATTCGGCATGAACTTGAGGTCCTATCTTGAAGAACAAGCTTCTGCATTCTGGCTAAC 1380
Query 1366 AACAGGTGGAATCATCATAGGCGCTGCAGTCGGCTTCTTCCTCATGTATTCCTATCTCAG 1425
||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1381 AACGGGTGGAATCATCATAGGCGCTGCAGTCGCCTTCTTTCTCATGTATTCCTATCTCAG 1440
Query 1426 TAGACGAAAAATCTTCTGAACCTTCAATCCTAAAAGATGGAACAAGAGGT 1475
|||||| |||||||| ||||||||||||||||||||| | || |||||||
Sbjct 1441 TAGACGCAAAATCTTTTGAACCTTCAATCCTAAAAGACGAAAGAAGAGGT 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5