BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489138
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22850.1 | Symbols: | Eukaryotic aspartyl protease family p... 2911 0.0
> AT5G22850.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:7633437-7636567 REVERSE LENGTH=2031
Length=2031
Score = 2911 bits (1576), Expect = 0.0
Identities = 1859/1989 (93%), Gaps = 46/1989 (2%)
Strand=Plus/Plus
Query 1 ACACTGGAACATTTTCTGTTTATCCGCTGTTATACTtctctctctctctATATCCCAAAA 60
||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 1 ACACTTGAACATTTTCTGTTTATCCGCTG-T-TACTTCTCTCTCTCTCTCTATCCCAAAA 58
Query 61 GACGACACAAGTACAAA-ACAAATCTGCAAA---TCTTCTTCTTCTGTCTTAATGAATTT 116
||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 59 GACGACACAAGTACAAACACAAATCTGCAAATCTTCTTCTTCTTCTGTCTTCATGAATTT 118
Query 117 CAAGACTACCGATTCGTAGCCGTTAACAATTTGACGGCTCAA---TTC--T-C----C-A 165
|||| ||| | |||| |||||||| ||||||||||||| ||| ||| | | |
Sbjct 119 CAAGTCTAACAATTCCTAGCCGTTTACAATTTGACGGCACAATTCTTCATTCCTTGTCGT 178
Query 166 G--AAGaa--aaaaaaaTGATCTTTTTGATTTTTGACGAGAT--TA-AGAGATCTTGTTA 218
| ||| ||||| |||||||||||| ||| ||| ||||| | |||||||||||||
Sbjct 179 GCCCGGAAGTAAAAAGATGATCTTTTTGGTTTCTGATGAGATAAAACAGAGATCTTGTTA 238
Query 219 ACACTTCA-AAGCATACCCAACTCGGGAAGCTATGGTGGCTATTCGTTTCGCGGCGGCGA 277
|||||| | ||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 239 ACACTT-ATAAGCAGACCCAACTCGGGAAGCTATGGCCGCTATTCGTTTTGCGGCGGCGA 297
Query 278 TTCTGATTTATTGTTTAGTACCGGCGGCGGTTTTATCTTACGGTTTCCCGGCGGCGCTGA 337
||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 298 TTCTGATTTGCTGTTTATTACCGGCGGCGGTTTTGTCTTACGGTTTCCCGGCGGCGTTGA 357
Query 338 AACTTGAAAGAGTGATTCCGGCGAATCACGAGATGGAACTTAGTCAGCTCAAGGCTCGTG 397
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 358 AACTTGAAAGAGTTATTCCAGCGAATCACGAAATGGAACTTAGTCAGCTCAAGGCTCGTG 417
Query 398 ATGAAGCTAGACACGGCAGATTGTTACAGTCTTTAGGCGGAGTCATAGATTTTCCCGTCG 457
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 418 ATGAAGCTAGACACGGCAGATTGTTACAGTCTTTAGGTGGAGTCATAGATTTTCCCGTGG 477
Query 458 ATGGAACTTTTGATCCTTTCGTTGTTGGATTATACTACACGAAAATACGATTAGGATCTC 517
| ||||||||||||||||||||||||||| | |||||||||||| ||||||||||| |||
Sbjct 478 ACGGAACTTTTGATCCTTTCGTTGTTGGACTGTACTACACGAAACTACGATTAGGAACTC 537
Query 518 CTCCAAGAGATTTTTATGTACAGGTTGATACAGGAAGTGATGTTTTGTGGGCTAGTTGTG 577
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 538 CTCCAAGAGATTTTTATGTACAGGTTGATACAGGAAGTGATGTTTTGTGGGTTAGTTGTG 597
Query 578 CTTCTTGTAATGGCTGCCCTCAAACCAGTGGACTCCAAATTCAGTTGAATTTCTTTGATC 637
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTTCTTGTAATGGCTGTCCTCAAACCAGTGGACTCCAAATTCAGTTGAATTTCTTTGATC 657
Query 638 CAGGGAGTTCTGTAACAGCAACACCGGTCTCATGTTCTGATCAAAGATGCAGTTGGGGTA 697
||||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 658 CAGGGAGCTCTGTAACAGCATCACCGATTTCATGTTCTGATCAAAGATGCAGTTGGGGTA 717
Query 698 TTCAGTCCTCTGCTTCTGGCTGTTCTGTTCAGAACAACCTTTGTGCTTATACGTTTCAGT 757
||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 718 TTCAGTCTTCTGATTCAGGCTGTTCTGTTCAGAACAACCTTTGTGCTTACACGTTTCAGT 777
Query 758 ATGGGGATGGAAGTGGCACCTCAGGGTTTTACGTCTCGGATGTCTTGCAATTTGACATGA 817
||||||||||||||||||| |||||||| ||||| || ||||||||||||||||| ||||
Sbjct 778 ATGGGGATGGAAGTGGCACTTCAGGGTTCTACGTATCTGATGTCTTGCAATTTGATATGA 837
Query 818 TTGTTGGAAGCTCTTTGGTCCCAAACTCAACGGCTCCGGTTGTGTTTGGTTGCAGCACCT 877
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTGTGGGAAGCTCTCTGGTCCCAAACTCAACGGCTCCGGTTGTGTTTGGTTGCAGCACCT 897
Query 878 CGCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGATGGAATCTTCGGGTTTGGCC 937
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 CTCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGATGGAATCTTCGGGTTTGGGC 957
Query 938 AGCAAGGAATGTCTGTGATTTCTCAGCTTGCTTCACAGGGATTAGCTCCAAGAGTGTTCT 997
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 958 AGCAAGGAATGTCTGTCATTTCTCAGCTTGCTTCACAGGGAATAGCTCCAAGAGTGTTCT 1017
Query 998 CTCACTGCTTGAAAGGAGAGAATGGAGGCGGAGGCATACTGGTTCTTGGAGAGATTGTGG 1057
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 CTCACTGCTTGAAAGGAGAGAATGGAGGCGGAGGCATATTGGTTCTTGGAGAGATTGTGG 1077
Query 1058 AGCCAAACATGGTCTTTACTCCTCTTGTCCCCTCGCAGCCTCATTACAATGTGAATCTTC 1117
|||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
Sbjct 1078 AGCCAAACATGGTCTTTACTCCACTTGTTCCCTCACAGCCTCATTACAATGTGAATCTGC 1137
Query 1118 TGAGCATCTCAGTGAATGGCCAAGCTTTACCTATCAATCCATCGGTCTTCTCTACATCAA 1177
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGAGCATCTCAGTAAATGGCCAAGCTTTACCTATCAATCCATCGGTCTTCTCTACATCAA 1197
Query 1178 ACGGTCAGGGAACAATCATTGACACTGGTACAACATTGGCATACCTTTCTGAAGCAGCCT 1237
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ACGGCCAGGGAACAATCATTGACACTGGTACAACATTGGCATACCTTTCTGAAGCAGCCT 1257
Query 1238 ATGTTCCTTTCGTTGAAGCTATTACAAATGCTGTTTCGCAGTCTGTCAGGCCCGTTGTTT 1297
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 ATGTTCCTTTCGTTGAAGCTATTACAAATGCTGTTTCGCAGTCTGTCAGACCCGTTGTTT 1317
Query 1298 CGAAAGGGAACCAATGTTACGTAATAGCCACAAGTGTCGCAGACATATTTCCTCCAGTTA 1357
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1318 CGAAAGGGAACCAATGTTACGTAATAACCACAAGTGTCGGAGACATATTTCCTCCAGTTA 1377
Query 1358 GCTTGAACTTTGCTGGTGGAGCATCCATGTTCTTGAATCCTCAGGATTACCTTATACAGC 1417
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1378 GCTTGAACTTTGCTGGTGGAGCATCTATGTTCTTGAATCCTCAGGATTACCTCATACAGC 1437
Query 1418 AGAACAATGTCGGAGGTACTGCAGTGTGGTGCATCGGTTTTCAAAGGATACAGAATCAAG 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AGAACAATGTCGGAGGTACTGCAGTGTGGTGCATCGGTTTTCAAAGGATACAGAATCAAG 1497
Query 1478 GGATAACAATCCTTGGAGATTTGGTTCTTAAAGACAAGATCTTTGTCTATGATCTGGTCG 1537
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GGATAACGATCCTTGGAGATTTGGTTCTTAAAGACAAGATCTTTGTCTATGATCTGGTCG 1557
Query 1538 GTCAGAGAATCGGATGGGCAAACTACGACTGTTCAATGTCGGTAAATGTCTCAGCGACTA 1597
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1558 GTCAGAGAATCGGATGGGCAAACTACGACTGTTCGACGTCGGTAAATGTCTCAGCGACTA 1617
Query 1598 GCAGCAGCGGAAGAAGCGAATATGTGAACGCAGGACAGTTTAGTGACAATTCTGCTGCAC 1657
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 1618 GCAGCAGCGGAAGAAGCGAATATGTGAACGCAGGACAGTTTAGTGAGAATGCTGCAGCAC 1677
Query 1658 CGCAGAAGTTATCTTTGGACATTGTTGGAAACACTCTAATGTTGTTACTAATGGTAATCA 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 CGCAGAAGTTATCTTTGGACATTGTTGGAAACACTCTAATGTTGTTACTAATGGTAATCA 1737
Query 1718 ACATGTTCTTATAGCACGTACAGCTTTTG-CAACGTTGCCTAAAATTGTAGTTTCTTCTA 1776
||||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||| |
Sbjct 1738 ACATGTTCTTATAGCAC--ACAGCTTTTCACAACTTTGCCTAAA-TTGTAGTTTCTTCGA 1794
Query 1777 TACCCCTTTTGATGTGGTCGTCGGCGTGTTA-TTTGTGGTCACCGGAGAGTAAGTTTCTC 1835
||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1795 TACCC-TTTTGATGTGGTCGTCGGCGTGTTAATTTGTGGTCACCGGCGAGTAAGTTTCTC 1853
Query 1836 CCAACCGGCGAAGCCCAGCAGAAGAAAAGTTAAC--GTTTGTTGTTTGttt-t-t-tttt 1890
|||||||||||| ||||||| ||||||| ||||| ||||||||||||||| | | ||||
Sbjct 1854 CCAACCGGCGAATCCCAGCAAAAGAAAAATTAACTTGTTTGTTGTTTGTTTGTATGTTTT 1913
Query 1891 tt-A--CC-ATTTCATTGTTATAGTTTTGGATGTACTGTACATAATTCCTTTTATACATA 1946
|| | || ||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1914 TTTATTCCTATTTCATTGTTATAGTTTT---TG-A-TGTACATAATTCCTTTTATACATA 1968
Query 1947 ATGGTGTCT 1955
| ||||||
Sbjct 1969 GTTGTGTCT 1977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96836851305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5