BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489143

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22875.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   483    8e-136


> AT5G22875.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 
chr5:7650633-7651776 FORWARD LENGTH=502
Length=502

 Score =  483 bits (261),  Expect = 8e-136
 Identities = 363/410 (89%), Gaps = 16/410 (4%)
 Strand=Plus/Plus

Query  74   TTTCTTGTTTGGGTTTCAAAGGCAAAAC--GAGATTACAATGGCACCATCACGTAACATA  131
            ||| ||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||| 
Sbjct  81   TTTTTTGTTTGGGTTACAAAGCCAAAACGAGAGATTACAATGGCACCATCACGTAACATC  140

Query  132  GTTGTAGCCACCGGTCTGGTTGTTTTCGCATCTGCAGGCTTAGCATTCCCCTTTTACATG  191
            ||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  141  GTTGTAGCCACCGGTTTGGTTCTTTTCGCATCTGCAGGCTTAGCTTTCCCCTTTTACATG  200

Query  192  GCATCGTCTAAACAACCAGTGATCGATCCAACAAAACCGTTACCTCCTCAAGCAACGTTT  251
            ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct  201  GCATCTTCGAAACAACCAGTTATCGATCCAACAAAACCATTACCTCCTCAAGCAACTTTT  260

Query  252  AGAGGACCTTACATAAACACTGGTTCACGCGATGTTGGACCTGACCATCGAACTTACCCA  311
            |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct  261  AGAGGACCTTACATAAACACAGGCTCACGCGATGTTGGACCTGATCATCGAACTTACCCA  320

Query  312  AAGAAATGATCCAATCAAGTCAAGATAATCAAGCAGGTGTTTTCATTGTGAA----G-A-  365
            ||||||||||||||||||||||| | ||| | |||||||||||||||||||     | | 
Sbjct  321  AAGAAATGATCCAATCAAGTCAAAACAATTACGCAGGTGTTTTCATTGTGAGCTTTGTAT  380

Query  366  -CA-A---TA-T--CGTTTTGAAGTTTGTGCTCGAATCCATGTAACTCGTTATGCTTCAT  417
             || |   || |  ||||||| ||||||| ||| ||||||| ||| ||||| | ||||||
Sbjct  381  TCATAAGATAATATCGTTTTGTAGTTTGTTCTCCAATCCATTTAAGTCGTTGTCCTTCAT  440

Query  418  GTAACACCAGTCCAACCTAACCATTGAATGAAACTGAAGAATCGGATTTA  467
            |||||||||||||||| ||||||||||||| |||||||||| | ||||||
Sbjct  441  GTAACACCAGTCCAACTTAACCATTGAATGTAACTGAAGAAACAGATTTA  490


 Score = 75.0 bits (40),  Expect = 6e-13
 Identities = 42/43 (98%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  29  CCCAAATGTTTCACTGAGTCGACTCGACCTCCTCATATCCCAA  71
           |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  7   CCCAAATGATTCACTGAGTCGACTCGACCTCCTCATATCCCAA  49



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22203492974


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5