BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489144 Length=526 Score E Sequences producing significant alignments: (Bits) Value AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-76... 833 0.0 AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 394 5e-109 AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19... 331 4e-90 AT2G28720.1 | Symbols: | Histone superfamily protein | chr2:12... 315 4e-85 AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:29... 243 2e-63 AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:57... 222 2e-57 > AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-7652622 REVERSE LENGTH=666 Length=666 Score = 833 bits (451), Expect = 0.0 Identities = 502/527 (95%), Gaps = 1/527 (0%) Strand=Plus/Plus Query 1 TTTGAAAATGGCGAAGGCAGACAAGAAACCAGCAGAGAAGAAACCGGCAGAGAAAACTCT 60 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 49 TTTGAAAATGGCGAAGGCAGATAAGAAACCAGCGGAGAAGAAACCGGCAGAGAAAACTCC 108 Query 61 GGCAGCCGAGCCCGCAGCGGCGGCAGAGAAGAAACCAAAAGCCGGCAAGAAGCTCCCAAA 120 ||||||||| || ||||| |||||||||||||||||||||||||| ||||| ||||| || Sbjct 109 GGCAGCCGAACCAGCAGCAGCGGCAGAGAAGAAACCAAAAGCCGGAAAGAAACTCCCGAA 168 Query 121 GGAACCTGCCGTCGCCGGAGACAAGAAGAAGAAGAGATCTAAGAAGAACGTCGAGACGTA 180 |||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct 169 GGAACCAGCCGGCGCCGGAGACAAGAAGAAGAAGAGATCAAAGAAGAACGTTGAGACATA 228 Query 181 CAAGATCTACATCTTCAAGGTGTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAA 240 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 229 CAAGATCTACATCTTCAAGGTGTTGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAA 288 Query 241 AGCCATGGGAATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTTGCTGGTGAGTC 300 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 289 AGCCATGGGAATCATGAACAGTTTCATCAATGATATCTTTGAGAAACTTGCTGGTGAGTC 348 Query 301 TTCGAAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGC 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 349 TTCGAAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGC 408 Query 361 GGTGAGACTTGTGTTGCCTGGTGAGTTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGC 420 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 409 GGTGAGACTTGTGTTGCCTGGAGAGTTGGCGAAACATGCTGTTTCTGAAGGGACTAAGGC 468 Query 421 GGTTACGAAGTTTACGAGTACTTAGATTTGGAATGTG-TTTTGTAATGGAGGTgtagtag 479 ||||||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||| Sbjct 469 GGTTACGAAGTTTACGAGTTCTTAGATTTGGAATGTGGTTTTGTAATGGAGGAGAAGTAG 528 Query 480 tagtagtagtTGGAATGTGAAATAGAGTTTATGCTTTTGGGTATCTT 526 ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 529 TAGTAGTAGTTGGAATGTGAAATAGGGTTTATGCTTTTGGGTATCTT 575 > AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | chr3:16913448-16914131 REVERSE LENGTH=684 Length=684 Score = 394 bits (213), Expect = 5e-109 Identities = 362/431 (84%), Gaps = 21/431 (5%) Strand=Plus/Plus Query 14 AAGGCAGACAAGAAACCAGCAGAGAAGAAACCGGCAGA-GA-AAACTCTGGCAGCCGAGC 71 |||||||| ||||| || |||||||||||||| | ||| || ||| || ||||||| Sbjct 90 AAGGCAGAGAAGAAGCCGGCAGAGAAGAAACCAGTAGAGGAGAAA-TC-AAAAGCCGAG- 146 Query 72 CCGCAGCGGCGGCAGAGAAGAAACCAAAAGCCGGCAAGAAGCTCCCAAAGGAA-CCTGCC 130 ||| | ||||||||||||||||||||||||||||| ||||| |||||| || | Sbjct 147 --AAAGCTCCTGCAGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAGGAAGCC-GGT 203 Query 131 GTCGCCGGAGACAAGAAGAAGAAGA-GATCTAAGAAGAACGTCGAGACGTACAAGATCTA 189 | || ||| || ||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 204 GCCGGCGGCGATAAGAAGAAGAAGATGA-AGAAGAAGAGTGTTGAGACGTACAAGATCTA 262 Query 190 CATCTTCAAGGTGT-TGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGG 248 |||||||||||| | |||||||||||||||||||||| || || ||||||||||| |||| Sbjct 263 CATCTTCAAGGT-TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGCAAAGCTATGG 321 Query 249 GAATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTTG-C-TGGTGAGTCTTCGAA 306 | || |||||||||||||||||||| |||||||||||| ||| | | | || || ||||| Sbjct 322 GGATTATGAACAGTTTCATCAACGACATCTTTGAGAAA-TTGGCATCG-GAATCGTCGAA 379 Query 307 GCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAG 366 ||| |||||||| || ||||||||||||||||||||| ||||||||||||| || || || Sbjct 380 GCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAG 439 Query 367 ACTTGTG-TTGCCTGGTGAG-TTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGCGGTT 424 |||||| || ||||||||| ||| | |||||||||||||||||||| ||||||||||| Sbjct 440 ACTTGTTCTT-CCTGGTGAGCTTG-CGAAACATGCTGTTTCTGAAGGAACTAAGGCGGTG 497 Query 425 ACGAAGTTTAC 435 || |||||||| Sbjct 498 ACTAAGTTTAC 508 > AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19889358-19889774 FORWARD LENGTH=417 Length=417 Score = 331 bits (179), Expect = 4e-90 Identities = 252/287 (88%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 143 AAGAAGAAGAAGAGATCTAAGAAGAACGTCGAGACGTACAAGATCTACATCTTCAAGGTG 202 ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 115 AAGAAGAAGAAGAAATCGAAGAAGAACATCGAGACGTACAAGATCTACATCTTCAAGGT- 173 Query 203 T-TGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATCATGAACAG 261 | |||||||||||||||| |||||||||||||| | ||||| ||||| ||||||||||| Sbjct 174 TCTGAAACAAGTTCATCCTGATATCGGAATCTCCGGGAAAGCGATGGGGATCATGAACAG 233 Query 262 TTTCATCAACGATATCTTTGAGAAACTTGCT-GGTGAGTCTTCGAAGCTT-GCGAGGTAC 319 |||||||||||| ||||| |||||||| ||| | || || ||| | || || |||||| Sbjct 234 TTTCATCAACGACATCTTCGAGAAACTAGCTCAG-GAATCATCG-CGATTGGCTAGGTAC 291 Query 320 AACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTTGTGTTGCCT 379 |||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||| Sbjct 292 AACAAGAAACCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCT 351 Query 380 GGTGAGTTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTAC 426 || ||| | | ||||| |||||||||||||| |||||||||||||| Sbjct 352 GGAGAGCTCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTAC 398 > AT2G28720.1 | Symbols: | Histone superfamily protein | chr2:12326978-12327678 FORWARD LENGTH=701 Length=701 Score = 315 bits (170), Expect = 4e-85 Identities = 315/381 (83%), Gaps = 25/381 (7%) Strand=Plus/Plus Query 83 GCAGAGAAGAAACCAAAAGCCGGCAAGAAGCTCCCAAAGGAACCTGCCGTCGCCGGA-GA 141 ||||||||||||||||||||||| || || || ||||| ||| || ||| ||||| || Sbjct 156 GCAGAGAAGAAACCAAAAGCCGGAAAAAAACTACCAAAAGAA---GCAGTCACCGGAGGA 212 Query 142 --CAAGAAGAAGAAG--A-GA-TCTAAGAAGAACG-TC-GAGACGTACAAGATCTACATC 193 | ||||||||||| | || || ||||| || | | ||||| ||||||||||||||| Sbjct 213 GTCGAGAAGAAGAAGAAACGAGTC-AAGAA-AA-GCACAGAGACATACAAGATCTACATC 269 Query 194 TTCAAGGTGTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATC 253 |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| || Sbjct 270 TTCAAGGTGTTGAAACAAGTTCATCCAGATATTGGAATCTCAAGTAAAGCTATGGGGATT 329 Query 254 ATGAACAGTTTCATCAACGATATCTTTGAGAAACTTGCTGGT-GA-GTCTTCGAAGCTT- 310 ||||||||||| ||||| ||||| || ||||||||||| | || | |||| || || Sbjct 330 ATGAACAGTTTTATCAATGATATATTCGAGAAACTTGC-GCAAGAAG-CTTCAAAA-TTA 386 Query 311 GCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTT 370 || ||||| || ||||| || |||||||||||||||||||||||||| || || ||||| Sbjct 387 GCTAGGTATAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGACAGCTGTTAGACTA 446 Query 371 GTGTTGCCTGGTGAG-TTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTACGAA 429 ||||| |||||||| ||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 447 GTGTTACCTGGTGAACTTG-CTAAGCATGCTGTTTCTGAAGGAACTAAGGCTGTTACTAA 505 Query 430 GTTTACGAG-TACTTAGATTT 449 |||||| || | ||||| ||| Sbjct 506 GTTTACTAGCT-CTTAGGTTT 525 > AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:2914714-2915321 REVERSE LENGTH=608 Length=608 Score = 243 bits (131), Expect = 2e-63 Identities = 252/310 (81%), Gaps = 10/310 (3%) Strand=Plus/Plus Query 144 AGAAGAAGAAG-AGATCTAAGAAGAACGTC-GAGACGTACAAGATCTACATCTTCAAGGT 201 ||| ||||||| ||| ||||||||| | | |||||||||||||||||| | |||||||| Sbjct 131 AGAGGAAGAAGAAGA-CTAAGAAGAGC-ACAGAGACGTACAAGATCTACCTATTCAAGGT 188 Query 202 GTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATCATGAACAG 261 |||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||| Sbjct 189 GTTGAAACAAGTTCATCCTGATATCGGGATCTCTGGAAAAGCCATGGGAATCATGAACAG 248 Query 262 TTTCATCAACGATATCTTTGAGAAACTTGCTGGTG-AGTCTTCGAAGCTTG-CGAGGTAC 319 |||||||||||| | ||| |||||| ||||| || | || ||| | ||| | ||||| Sbjct 249 TTTCATCAACGACACCTTCGAGAAAATTGCTC-TGGAATCGTCGC-GATTGGCTAGGTAT 306 Query 320 AACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTTGTGTTGCCT 379 |||||||| |||||||| || || |||| || || || || || || || ||||||||| Sbjct 307 AACAAGAAACCGACGATCACGTCCCGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCT 366 Query 380 GGTGAGTTGGCAAAACATGCTGTTTCTGAAGGG-ACTAAGGCGGTTACGAAGTTTACGAG 438 ||||| || || || || ||||||||||| ||| || || || || || || || || || Sbjct 367 GGTGAATTAGCGAAGCACGCTGTTTCTGA-GGGTACCAAAGCCGTCACCAAATTCACCAG 425 Query 439 TACTTAGATT 448 | |||||||| Sbjct 426 TTCTTAGATT 435 > AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:576742-577140 REVERSE LENGTH=399 Length=399 Score = 222 bits (120), Expect = 2e-57 Identities = 227/277 (82%), Gaps = 14/277 (5%) Strand=Plus/Plus Query 142 CAAGAAGAAGAAG-AGATCTAAGAAGAACGTC-GAGACGTACAAGATCTACATCTTCAAG 199 ||||||||||||| ||| | ||||||| | | |||||||||||||||||||| |||||| Sbjct 96 CAAGAAGAAGAAGAAGA-CGAAGAAGAGC-ACAGAGACGTACAAGATCTACATTTTCAAG 153 Query 200 GTGTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATCATGAAC 259 || |||||||| |||||||||||||| |||||||| | ||||| ||||||||||||||| Sbjct 154 GTATTGAAACAGGTTCATCCAGATATTGGAATCTCTGGTAAAGCGATGGGAATCATGAAC 213 Query 260 AGTTTCATCAACGATATCTTT-GAGAAACTTGCTG-GTGAGTC-T-TCGAAGCTTGCGAG 315 |||||||||||||| || ||| |||||||| ||| | || || | ||| || || | Sbjct 214 AGTTTCATCAACGACAT-TTTCGAGAAACTCGCTCAG-GAATCGTCTCGT--CTCGCTCG 269 Query 316 GTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTTGTGT- 374 ||||| ||||| |||||||| || ||| | || || || || || ||||||||||| | Sbjct 270 TTACAATAAGAAACCGACGATCACGTCTCGTGAAATCCAAACCGCCGTGAGACTTGT-TC 328 Query 375 TGCCTGGTGAGTTGGCAAAACATGCTGTTTCTGAAGG 411 |||||||||| ||||| || ||||| || |||||||| Sbjct 329 TGCCTGGTGAATTGGCTAAGCATGCCGTCTCTGAAGG 365 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25167307647 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5