BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489144
Length=526
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-76... 833 0.0
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 394 5e-109
AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19... 331 4e-90
AT2G28720.1 | Symbols: | Histone superfamily protein | chr2:12... 315 4e-85
AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:29... 243 2e-63
AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:57... 222 2e-57
> AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-7652622
REVERSE LENGTH=666
Length=666
Score = 833 bits (451), Expect = 0.0
Identities = 502/527 (95%), Gaps = 1/527 (0%)
Strand=Plus/Plus
Query 1 TTTGAAAATGGCGAAGGCAGACAAGAAACCAGCAGAGAAGAAACCGGCAGAGAAAACTCT 60
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 49 TTTGAAAATGGCGAAGGCAGATAAGAAACCAGCGGAGAAGAAACCGGCAGAGAAAACTCC 108
Query 61 GGCAGCCGAGCCCGCAGCGGCGGCAGAGAAGAAACCAAAAGCCGGCAAGAAGCTCCCAAA 120
||||||||| || ||||| |||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 109 GGCAGCCGAACCAGCAGCAGCGGCAGAGAAGAAACCAAAAGCCGGAAAGAAACTCCCGAA 168
Query 121 GGAACCTGCCGTCGCCGGAGACAAGAAGAAGAAGAGATCTAAGAAGAACGTCGAGACGTA 180
|||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 169 GGAACCAGCCGGCGCCGGAGACAAGAAGAAGAAGAGATCAAAGAAGAACGTTGAGACATA 228
Query 181 CAAGATCTACATCTTCAAGGTGTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAA 240
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 229 CAAGATCTACATCTTCAAGGTGTTGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAA 288
Query 241 AGCCATGGGAATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTTGCTGGTGAGTC 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 289 AGCCATGGGAATCATGAACAGTTTCATCAATGATATCTTTGAGAAACTTGCTGGTGAGTC 348
Query 301 TTCGAAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 349 TTCGAAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGC 408
Query 361 GGTGAGACTTGTGTTGCCTGGTGAGTTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGC 420
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 409 GGTGAGACTTGTGTTGCCTGGAGAGTTGGCGAAACATGCTGTTTCTGAAGGGACTAAGGC 468
Query 421 GGTTACGAAGTTTACGAGTACTTAGATTTGGAATGTG-TTTTGTAATGGAGGTgtagtag 479
||||||||||||||||||| ||||||||||||||||| |||||||||||||| | |||||
Sbjct 469 GGTTACGAAGTTTACGAGTTCTTAGATTTGGAATGTGGTTTTGTAATGGAGGAGAAGTAG 528
Query 480 tagtagtagtTGGAATGTGAAATAGAGTTTATGCTTTTGGGTATCTT 526
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 529 TAGTAGTAGTTGGAATGTGAAATAGGGTTTATGCTTTTGGGTATCTT 575
> AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
chr3:16913448-16914131 REVERSE LENGTH=684
Length=684
Score = 394 bits (213), Expect = 5e-109
Identities = 362/431 (84%), Gaps = 21/431 (5%)
Strand=Plus/Plus
Query 14 AAGGCAGACAAGAAACCAGCAGAGAAGAAACCGGCAGA-GA-AAACTCTGGCAGCCGAGC 71
|||||||| ||||| || |||||||||||||| | ||| || ||| || |||||||
Sbjct 90 AAGGCAGAGAAGAAGCCGGCAGAGAAGAAACCAGTAGAGGAGAAA-TC-AAAAGCCGAG- 146
Query 72 CCGCAGCGGCGGCAGAGAAGAAACCAAAAGCCGGCAAGAAGCTCCCAAAGGAA-CCTGCC 130
||| | ||||||||||||||||||||||||||||| ||||| |||||| || |
Sbjct 147 --AAAGCTCCTGCAGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAGGAAGCC-GGT 203
Query 131 GTCGCCGGAGACAAGAAGAAGAAGA-GATCTAAGAAGAACGTCGAGACGTACAAGATCTA 189
| || ||| || ||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 204 GCCGGCGGCGATAAGAAGAAGAAGATGA-AGAAGAAGAGTGTTGAGACGTACAAGATCTA 262
Query 190 CATCTTCAAGGTGT-TGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGG 248
|||||||||||| | |||||||||||||||||||||| || || ||||||||||| ||||
Sbjct 263 CATCTTCAAGGT-TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGCAAAGCTATGG 321
Query 249 GAATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTTG-C-TGGTGAGTCTTCGAA 306
| || |||||||||||||||||||| |||||||||||| ||| | | | || || |||||
Sbjct 322 GGATTATGAACAGTTTCATCAACGACATCTTTGAGAAA-TTGGCATCG-GAATCGTCGAA 379
Query 307 GCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAG 366
||| |||||||| || ||||||||||||||||||||| ||||||||||||| || || ||
Sbjct 380 GCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAG 439
Query 367 ACTTGTG-TTGCCTGGTGAG-TTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGCGGTT 424
|||||| || ||||||||| ||| | |||||||||||||||||||| |||||||||||
Sbjct 440 ACTTGTTCTT-CCTGGTGAGCTTG-CGAAACATGCTGTTTCTGAAGGAACTAAGGCGGTG 497
Query 425 ACGAAGTTTAC 435
|| ||||||||
Sbjct 498 ACTAAGTTTAC 508
> AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19889358-19889774
FORWARD LENGTH=417
Length=417
Score = 331 bits (179), Expect = 4e-90
Identities = 252/287 (88%), Gaps = 6/287 (2%)
Strand=Plus/Plus
Query 143 AAGAAGAAGAAGAGATCTAAGAAGAACGTCGAGACGTACAAGATCTACATCTTCAAGGTG 202
||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 115 AAGAAGAAGAAGAAATCGAAGAAGAACATCGAGACGTACAAGATCTACATCTTCAAGGT- 173
Query 203 T-TGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATCATGAACAG 261
| |||||||||||||||| |||||||||||||| | ||||| ||||| |||||||||||
Sbjct 174 TCTGAAACAAGTTCATCCTGATATCGGAATCTCCGGGAAAGCGATGGGGATCATGAACAG 233
Query 262 TTTCATCAACGATATCTTTGAGAAACTTGCT-GGTGAGTCTTCGAAGCTT-GCGAGGTAC 319
|||||||||||| ||||| |||||||| ||| | || || ||| | || || ||||||
Sbjct 234 TTTCATCAACGACATCTTCGAGAAACTAGCTCAG-GAATCATCG-CGATTGGCTAGGTAC 291
Query 320 AACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTTGTGTTGCCT 379
|||||||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 292 AACAAGAAACCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCT 351
Query 380 GGTGAGTTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTAC 426
|| ||| | | ||||| |||||||||||||| ||||||||||||||
Sbjct 352 GGAGAGCTCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTAC 398
> AT2G28720.1 | Symbols: | Histone superfamily protein | chr2:12326978-12327678
FORWARD LENGTH=701
Length=701
Score = 315 bits (170), Expect = 4e-85
Identities = 315/381 (83%), Gaps = 25/381 (7%)
Strand=Plus/Plus
Query 83 GCAGAGAAGAAACCAAAAGCCGGCAAGAAGCTCCCAAAGGAACCTGCCGTCGCCGGA-GA 141
||||||||||||||||||||||| || || || ||||| ||| || ||| ||||| ||
Sbjct 156 GCAGAGAAGAAACCAAAAGCCGGAAAAAAACTACCAAAAGAA---GCAGTCACCGGAGGA 212
Query 142 --CAAGAAGAAGAAG--A-GA-TCTAAGAAGAACG-TC-GAGACGTACAAGATCTACATC 193
| ||||||||||| | || || ||||| || | | ||||| |||||||||||||||
Sbjct 213 GTCGAGAAGAAGAAGAAACGAGTC-AAGAA-AA-GCACAGAGACATACAAGATCTACATC 269
Query 194 TTCAAGGTGTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATC 253
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 270 TTCAAGGTGTTGAAACAAGTTCATCCAGATATTGGAATCTCAAGTAAAGCTATGGGGATT 329
Query 254 ATGAACAGTTTCATCAACGATATCTTTGAGAAACTTGCTGGT-GA-GTCTTCGAAGCTT- 310
||||||||||| ||||| ||||| || ||||||||||| | || | |||| || ||
Sbjct 330 ATGAACAGTTTTATCAATGATATATTCGAGAAACTTGC-GCAAGAAG-CTTCAAAA-TTA 386
Query 311 GCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTT 370
|| ||||| || ||||| || |||||||||||||||||||||||||| || || |||||
Sbjct 387 GCTAGGTATAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGACAGCTGTTAGACTA 446
Query 371 GTGTTGCCTGGTGAG-TTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTACGAA 429
||||| |||||||| ||| | || ||||||||||||||||| |||||||| ||||| ||
Sbjct 447 GTGTTACCTGGTGAACTTG-CTAAGCATGCTGTTTCTGAAGGAACTAAGGCTGTTACTAA 505
Query 430 GTTTACGAG-TACTTAGATTT 449
|||||| || | ||||| |||
Sbjct 506 GTTTACTAGCT-CTTAGGTTT 525
> AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:2914714-2915321
REVERSE LENGTH=608
Length=608
Score = 243 bits (131), Expect = 2e-63
Identities = 252/310 (81%), Gaps = 10/310 (3%)
Strand=Plus/Plus
Query 144 AGAAGAAGAAG-AGATCTAAGAAGAACGTC-GAGACGTACAAGATCTACATCTTCAAGGT 201
||| ||||||| ||| ||||||||| | | |||||||||||||||||| | ||||||||
Sbjct 131 AGAGGAAGAAGAAGA-CTAAGAAGAGC-ACAGAGACGTACAAGATCTACCTATTCAAGGT 188
Query 202 GTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATCATGAACAG 261
|||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||
Sbjct 189 GTTGAAACAAGTTCATCCTGATATCGGGATCTCTGGAAAAGCCATGGGAATCATGAACAG 248
Query 262 TTTCATCAACGATATCTTTGAGAAACTTGCTGGTG-AGTCTTCGAAGCTTG-CGAGGTAC 319
|||||||||||| | ||| |||||| ||||| || | || ||| | ||| | |||||
Sbjct 249 TTTCATCAACGACACCTTCGAGAAAATTGCTC-TGGAATCGTCGC-GATTGGCTAGGTAT 306
Query 320 AACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTTGTGTTGCCT 379
|||||||| |||||||| || || |||| || || || || || || || |||||||||
Sbjct 307 AACAAGAAACCGACGATCACGTCCCGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCT 366
Query 380 GGTGAGTTGGCAAAACATGCTGTTTCTGAAGGG-ACTAAGGCGGTTACGAAGTTTACGAG 438
||||| || || || || ||||||||||| ||| || || || || || || || || ||
Sbjct 367 GGTGAATTAGCGAAGCACGCTGTTTCTGA-GGGTACCAAAGCCGTCACCAAATTCACCAG 425
Query 439 TACTTAGATT 448
| ||||||||
Sbjct 426 TTCTTAGATT 435
> AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:576742-577140
REVERSE LENGTH=399
Length=399
Score = 222 bits (120), Expect = 2e-57
Identities = 227/277 (82%), Gaps = 14/277 (5%)
Strand=Plus/Plus
Query 142 CAAGAAGAAGAAG-AGATCTAAGAAGAACGTC-GAGACGTACAAGATCTACATCTTCAAG 199
||||||||||||| ||| | ||||||| | | |||||||||||||||||||| ||||||
Sbjct 96 CAAGAAGAAGAAGAAGA-CGAAGAAGAGC-ACAGAGACGTACAAGATCTACATTTTCAAG 153
Query 200 GTGTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATCATGAAC 259
|| |||||||| |||||||||||||| |||||||| | ||||| |||||||||||||||
Sbjct 154 GTATTGAAACAGGTTCATCCAGATATTGGAATCTCTGGTAAAGCGATGGGAATCATGAAC 213
Query 260 AGTTTCATCAACGATATCTTT-GAGAAACTTGCTG-GTGAGTC-T-TCGAAGCTTGCGAG 315
|||||||||||||| || ||| |||||||| ||| | || || | ||| || || |
Sbjct 214 AGTTTCATCAACGACAT-TTTCGAGAAACTCGCTCAG-GAATCGTCTCGT--CTCGCTCG 269
Query 316 GTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTTGTGT- 374
||||| ||||| |||||||| || ||| | || || || || || ||||||||||| |
Sbjct 270 TTACAATAAGAAACCGACGATCACGTCTCGTGAAATCCAAACCGCCGTGAGACTTGT-TC 328
Query 375 TGCCTGGTGAGTTGGCAAAACATGCTGTTTCTGAAGG 411
|||||||||| ||||| || ||||| || ||||||||
Sbjct 329 TGCCTGGTGAATTGGCTAAGCATGCCGTCTCTGAAGG 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25167307647
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5