BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489145
Length=2448
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22900.1 | Symbols: ATCHX3, CHX3 | cation/H+ exchanger 3 | c... 3531 0.0
> AT5G22900.1 | Symbols: ATCHX3, CHX3 | cation/H+ exchanger 3 |
chr5:7657224-7659868 FORWARD LENGTH=2469
Length=2469
Score = 3531 bits (1912), Expect = 0.0
Identities = 2290/2472 (93%), Gaps = 27/2472 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAGTTTGGAGATAATAAGATGCTTTACTTGAGAGACACATGGAGACAAGGAACC 60
||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1 ATGGAGGTGTTTGGAGATAATAAGATGTTTTACATGAGAGACACATGGAGAGAAGGAACC 60
Query 61 ATGATCTGTGACGTCTTACCTATCAACCCTAGCTCCAATGGTGTTTGGCCGGAACCAAAA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 61 ATGATTTGTGACGTCTTACCTATCAACCCTAGCTCCAATGGTGTTTGGCCGCAACAAAAA 120
Query 121 TTCTCAGATCCTAACATTAATGTTCATTTCTGGAATTACACGTTTCCACACTTGCAAATG 180
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TTCTCAGATCCTAACATCAATGTTCATTTCTGGAATTACGCGTTTCCACACTTGCAAATG 180
Query 181 ATATTTCTCATCATCTCTTTCCTCTGGCAATTCTTGCATTTCTTCCTCCGACGTCTCGGC 240
||||||||||||||||||||| | ||||||||||| ||||||||||| |||||||| |||
Sbjct 181 ATATTTCTCATCATCTCTTTCTTATGGCAATTCTTACATTTCTTCCTTCGACGTCTTGGC 240
Query 241 ATGATCCGTTTCACTTCTCATATGCTTACTGGTGTTCTTTTAAGCAAGTCTTTTCTAAAG 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGATACGTTTCACTTCTCATATGCTTACTGGTGTTCTTTTAAGCAAGTCTTTTCTAAAG 300
Query 301 GAGAATTCAGCGGCCAGAAGATTCTTTTCTACAGAGGATTACAAAGAGATTGTGTTTAGT 360
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGAATTCAGCAGCGAGAAGATTCTTTTCTACAGAGGATTACAAAGAGATTGTGTTTAGT 360
Query 361 CTCACTGCTGCTTGTTCTTACATGATGTTCTGGTTCTTGATGGGAGTTAAAATGGACATG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CTCACTGCTGCTTGTTCTTACATGATGTTCTGGTTCTTGATGGGAGTTAAAATGGACACG 420
Query 421 GGTTTGATCCGAACCACGGGAAGAAAAGCCATTACCATAGGGATCTCCTCTGTTTTACTT 480
||||||||||||||||| ||||||||||| || ||||| ||| |||||||||||||||||
Sbjct 421 GGTTTGATCCGAACCACAGGAAGAAAAGCTATCACCATTGGGCTCTCCTCTGTTTTACTT 480
Query 481 TCGACGTTAGTTTGTTCCGTTATCTTCTTCGGAAACTTGAGGGACGTTGGAACCAAGAAC 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 481 TCGACGTTAGTTTGTTCCGTTATCTTCTTCGGAAACTTAAGGGACGTTGGAACGAAAAAC 540
Query 541 TCGGATCATACTCTCAATTCATTGGAG-ACTGTTGTGATTTACTCGATTCAATGTCTTTC 599
|| || ||||||||||||||||| ||| | ||||||||||||||| || |||||||||||
Sbjct 541 TCAGACCATACTCTCAATTCATTAGAGTA-TGTTGTGATTTACTCAATCCAATGTCTTTC 599
Query 600 GTCTTTCCCCGTTGTTGGAAACCTTCTTTTTGAGCTCAGGCTACAGAACTCAGAGCTTGG 659
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 600 TTCTTTCCCCGTTGTTGGAAACCTTCTCTTTGAGCTCAGGCTACAAAACTCAGAGCTTGG 659
Query 660 TCGTTTAGCGATGTCTTCTGCTGTGATAAGTGATTTCAGCACCTCGGTTCTCGCTTCTGC 719
|||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 660 TCGTCTAGCGATATCTTCTGCTGTGATAAGTGATTTCAGCACCTCAATTCTCGCTTCCGT 719
Query 720 TCTCATCTTTATGAAGGAGCTTAAGGACGAACAAACACGGCTCGGGAGCGTGTTTATAGG 779
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 720 TCTCATATTTATGAAGGAGCTCAAGGACGAACAAACACGGCTCGGGAGTGTGTTTATAGG 779
Query 780 TGATGTTATTGCTGGGAATCGTCCTTTGAAGCGAGCAGCGATAGTGGTTCTCTTTGTTTG 839
|||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 780 TGATGTTATTGCAGGGAATCGTCCTTTGATGCGAGCAGGGATAGTGGTTCTCTTTGTATG 839
Query 840 TCTTGCCATCTATGTTTTCAGACCTTTAATGTTCTACATTGTTAAACAAACGCCTTCCGG 899
| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct 840 TATTGCCATCTATGTTTTCAGACCGTTAATGTTCTACATTATTAAACAAACACCTTCCGG 899
Query 900 TCGTCCCGTTAAGGCAATCTACTTAACTACAATCATTGTTATGGTCTCTGGATCAGCCAT 959
||||||||| |||||||||||||||| |||||| ||||||||||| ||||| ||||||||
Sbjct 900 TCGTCCCGTCAAGGCAATCTACTTAAGTACAATAATTGTTATGGTTTCTGGTTCAGCCAT 959
Query 960 TCTTGCGAATTGGTGCAAGCAATCTATTTTCATGGGACCTTTCATCTTAGGTCTTGCAGT 1019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 TCTTGCCAATTGGTGCAAGCAATCTATTTTCATGGGACCTTTCATCTTAGGTCTTGCTGT 1019
Query 1020 TCCTCATGGTCCTCCTTTAGGTTCTGCAATCATTCAGAAGTACGAGTCCGCTATATTCGG 1079
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1020 TCCTCATGGTCCTCCTTTAGGTTCTGCGATCATTCAGAAGTATGAGTCGGCTATATTCGG 1079
Query 1080 AACTTTTATTCCGTTTTTCGTTGCTTCATCTTCCACGGAGATTGACATTTCGGCTTTATT 1139
||||||| ||||||||||| |||||||||||||||||||||| || ||||||||||||||
Sbjct 1080 AACTTTTCTTCCGTTTTTCATTGCTTCATCTTCCACGGAGATCGATATTTCGGCTTTATT 1139
Query 1140 TGATTGGGAAGATCTCAGTGGCATTATTCTCATCATGATAACATCTTTCGTTGTCAAATT 1199
|| |||||||| ||||| ||| ||||| ||||||||| |||||||||| || ||||| ||
Sbjct 1140 TGGTTGGGAAGGTCTCAATGGTATTATACTCATCATGGTAACATCTTTTGTCGTCAAGTT 1199
Query 1200 CATCTTGACTACTGTTGCTGCTTTGTTCTATCGTATGCCGATGGAAGACTGCTTCGCTAT 1259
|||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||| |
Sbjct 1200 CATCTTTACTACTGTTCCTGCTTTGTTCTATGGTATGCCGATGGAAGATTGCTTCGCTCT 1259
Query 1260 ATCTCTTATCATGTCTTTTAAAGGCATCTTCGAGCTCGGTGCCTATGCCTTGGCCTACCA 1319
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 ATCTCTTATCATGTCGTTTAAAGGCATCTTCGAGCTCGGTGCCTACGCCTTGGCCTACCA 1319
Query 1320 AAGAGGGTCTGTCCGTCCAGAGACCTTCACTGTCGCGTGTCTTTACATAATGTTGAATTC 1379
|||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1320 AAGAGGGTCTGTCCGTCCCGAGACCTTCACTGTGGCGTGTCTTTACATAACGTTGAACTC 1379
Query 1380 CGCAATCATTCCTCCGATCTTGCGGTACTTATACGATCCTTCGAGGATGTACGCGGGGTA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CGCAATCATTCCTCCGATCTTGCGGTACTTATACGATCCTTCGAGGATGTACGCGGGGTA 1439
Query 1440 CGAGAAGCGGAATATGCAGCACCTGAAACAAAACTCTGAGCTAAGGATTCTGTCTTGCAT 1499
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1440 CGAGAAGCGGAATATGCAGCATTTGAAACCAAACTCTGAGCTAAGGATTCTGTCTTGCAT 1499
Query 1500 TTACAGAACCGAAGATATAAGTCCAACGATCAATCTTCTCGAAGCTACTTGTCCGTCCCG 1559
||||||||| || ||||||||||||| ||| |||||||| ||||||| ||||||||||||
Sbjct 1500 TTACAGAACTGATGATATAAGTCCAATGATTAATCTTCTTGAAGCTATTTGTCCGTCCCG 1559
Query 1560 GGAATCTCCTGTAGC-ATCCTACGTCCTCCACTTGATGGAGCTGGTAGGACAAGCCAATC 1618
||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1560 GGAATCTCCTGTAGCTA-CCTACGTTCTCCACTTGATGGAGCTTGTAGGACAAGCAAATC 1618
Query 1619 CGATTTTCATTTCTCACAAATTGCAAACTCGCAGAACAGAGGAGACGTCTTATTCAAACA 1678
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 CGATCTTCATTTCACATAAATTGCAAACTCGCAGAACAGAGGAGACGTCTTATTCAAACA 1678
Query 1679 ATGTACTTGTCTCCTTTGAAAAATTCCACAAAGATTTTTATGGCTCGGTCTTCGTAAGTA 1738
|||||||||||||||||||||| || | |||||||| ||||| |||||||||||||| |
Sbjct 1679 ATGTACTTGTCTCCTTTGAAAAGTTTCGTAAAGATTTCTATGGTTCGGTCTTCGTAAGCA 1738
Query 1739 TCTACACGGCCTTATCTATGCCTGATACAATGCACGGAGACATCTGTATGCTTGCTCTTA 1798
||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||| |
Sbjct 1739 CCTACACGGCTTTATCTATGCCCGATACGATGCACGGAGATATATGTATGCTTGCTCTCA 1798
Query 1799 ACAACACTACTTCCCTCATACTCCTTCCTTTTCACCAAACTTGGTCTGCTGACGGATCCG 1858
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1799 ACAACACTACTTCTCTCATACTCCTTCCTTTTCACCAGACTTGGTCTGCTGACGGATCAG 1858
Query 1859 CTCTCATCTCAAACAGCAACATGATCAGGAACCTTAACAAGAGCGTTCTCGACGTGGCAC 1918
|||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1859 CTCTTATCTCTAACAATAACATGATCCGGAACCTTAACAAGAGCGTTCTCGACGTGGCAC 1918
Query 1919 CGTGTTCTGTCGGAATCTTTGTATACCGAAGCAGTTCCGGACGGA---------G----- 1964
| |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1919 CTTGTTCTGTCGGAGTCTTTGTATACCGAAGCAGTTCCGGACGGAAAAACATCAGTTCCG 1978
Query 1965 -A---A---CCATCAATGACACCGTTTCAAACTTATCATCTTACAATATATGTATGATCT 2017
| | ||||||||| ||| ||| |||||||||||||||||||||| ||||||||||
Sbjct 1979 GACGGAAAACCATCAATGGCACAGTTCCAAACTTATCATCTTACAATATTTGTATGATCT 2038
Query 2018 TCCTAGGCGGTAAAGACGATAGAGAAGCAGTGACACTTGCAACACGAATGGCCCGTGACC 2077
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2039 TCCTAGGCGGTAAAGACGATAGAGAAGCAGTGACACTTGCTACACGAATGGCCCGTGACC 2098
Query 2078 CGAGAATCAACATAACTGTTGTCCGAATGATCACTACCGATGAGAAAGCACGAGAAAACT 2137
| || ||||| ||||| |||| ||| |||||||||||||||||||||||||||| |||
Sbjct 2099 CAAGGATCAATATAACCATTGTTCGACTGATCACTACCGATGAGAAAGCACGAGAGAACA 2158
Query 2138 CAGAGTGGGATAAAATGCTTGACGATGAAATACTTAGAGAAGTGAAGAGCAATACATTAG 2197
| | ||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||
Sbjct 2159 CGGTGTGGGATAAAATGCTTGACGATGAACTTCTTAGAGACGTGAAAAGCAATACATTAG 2218
Query 2198 TAGACATTTTCTACTCGGAGAAAGCGGTTGAAGACGCGTCTGAGACATCGGGTTTGCTGA 2257
|||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||| |
Sbjct 2219 TAGACATTTTCTACTCGGAGAAAGCGATTGAAGACGCGGCTGAAACATCGAGTTTGCT-A 2277
Query 2258 A-ATCGATGGTAAGCGATTTCGATATGTTCATAGTGGGAAGAGGGAAAGGAAGGAAGAGT 2316
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 2278 AGATCGATGGTAAGCGATTTCGATATGTTCATAGTGGGAAGAGGGAACGGAAGGACGAGT 2337
Query 2317 GTGTTCACAGATGGGCTTGAGGAATGGAGTGAGTTTAAGGAGCTTGGTATTATTGGGGAC 2376
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2338 GTGTTCACAGAAGGGCTTGAGGAATGGAGTGAGTTTAAGGAGCTTGGTATTATTGGAGAT 2397
Query 2377 TTATTGACTTCACAGGATTTTAATTGCCAAGCTTCTGTTTTGGTTATACAACAACAACAA 2436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 TTATTGACTTCACAGGATTTTAATTGCCAAGCTTCTGTTTTGGTTATACAACAACAACAG 2457
Query 2437 CTTATGATTTAG 2448
|| |||||||||
Sbjct 2458 CTAATGATTTAG 2469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121585719990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5