BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489145 Length=2448 Score E Sequences producing significant alignments: (Bits) Value AT5G22900.1 | Symbols: ATCHX3, CHX3 | cation/H+ exchanger 3 | c... 3531 0.0 > AT5G22900.1 | Symbols: ATCHX3, CHX3 | cation/H+ exchanger 3 | chr5:7657224-7659868 FORWARD LENGTH=2469 Length=2469 Score = 3531 bits (1912), Expect = 0.0 Identities = 2290/2472 (93%), Gaps = 27/2472 (1%) Strand=Plus/Plus Query 1 ATGGAGGAGTTTGGAGATAATAAGATGCTTTACTTGAGAGACACATGGAGACAAGGAACC 60 ||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 1 ATGGAGGTGTTTGGAGATAATAAGATGTTTTACATGAGAGACACATGGAGAGAAGGAACC 60 Query 61 ATGATCTGTGACGTCTTACCTATCAACCCTAGCTCCAATGGTGTTTGGCCGGAACCAAAA 120 ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 61 ATGATTTGTGACGTCTTACCTATCAACCCTAGCTCCAATGGTGTTTGGCCGCAACAAAAA 120 Query 121 TTCTCAGATCCTAACATTAATGTTCATTTCTGGAATTACACGTTTCCACACTTGCAAATG 180 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 121 TTCTCAGATCCTAACATCAATGTTCATTTCTGGAATTACGCGTTTCCACACTTGCAAATG 180 Query 181 ATATTTCTCATCATCTCTTTCCTCTGGCAATTCTTGCATTTCTTCCTCCGACGTCTCGGC 240 ||||||||||||||||||||| | ||||||||||| ||||||||||| |||||||| ||| Sbjct 181 ATATTTCTCATCATCTCTTTCTTATGGCAATTCTTACATTTCTTCCTTCGACGTCTTGGC 240 Query 241 ATGATCCGTTTCACTTCTCATATGCTTACTGGTGTTCTTTTAAGCAAGTCTTTTCTAAAG 300 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATGATACGTTTCACTTCTCATATGCTTACTGGTGTTCTTTTAAGCAAGTCTTTTCTAAAG 300 Query 301 GAGAATTCAGCGGCCAGAAGATTCTTTTCTACAGAGGATTACAAAGAGATTGTGTTTAGT 360 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GAGAATTCAGCAGCGAGAAGATTCTTTTCTACAGAGGATTACAAAGAGATTGTGTTTAGT 360 Query 361 CTCACTGCTGCTTGTTCTTACATGATGTTCTGGTTCTTGATGGGAGTTAAAATGGACATG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 361 CTCACTGCTGCTTGTTCTTACATGATGTTCTGGTTCTTGATGGGAGTTAAAATGGACACG 420 Query 421 GGTTTGATCCGAACCACGGGAAGAAAAGCCATTACCATAGGGATCTCCTCTGTTTTACTT 480 ||||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||||||| Sbjct 421 GGTTTGATCCGAACCACAGGAAGAAAAGCTATCACCATTGGGCTCTCCTCTGTTTTACTT 480 Query 481 TCGACGTTAGTTTGTTCCGTTATCTTCTTCGGAAACTTGAGGGACGTTGGAACCAAGAAC 540 |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| Sbjct 481 TCGACGTTAGTTTGTTCCGTTATCTTCTTCGGAAACTTAAGGGACGTTGGAACGAAAAAC 540 Query 541 TCGGATCATACTCTCAATTCATTGGAG-ACTGTTGTGATTTACTCGATTCAATGTCTTTC 599 || || ||||||||||||||||| ||| | ||||||||||||||| || ||||||||||| Sbjct 541 TCAGACCATACTCTCAATTCATTAGAGTA-TGTTGTGATTTACTCAATCCAATGTCTTTC 599 Query 600 GTCTTTCCCCGTTGTTGGAAACCTTCTTTTTGAGCTCAGGCTACAGAACTCAGAGCTTGG 659 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 600 TTCTTTCCCCGTTGTTGGAAACCTTCTCTTTGAGCTCAGGCTACAAAACTCAGAGCTTGG 659 Query 660 TCGTTTAGCGATGTCTTCTGCTGTGATAAGTGATTTCAGCACCTCGGTTCTCGCTTCTGC 719 |||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | Sbjct 660 TCGTCTAGCGATATCTTCTGCTGTGATAAGTGATTTCAGCACCTCAATTCTCGCTTCCGT 719 Query 720 TCTCATCTTTATGAAGGAGCTTAAGGACGAACAAACACGGCTCGGGAGCGTGTTTATAGG 779 |||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 720 TCTCATATTTATGAAGGAGCTCAAGGACGAACAAACACGGCTCGGGAGTGTGTTTATAGG 779 Query 780 TGATGTTATTGCTGGGAATCGTCCTTTGAAGCGAGCAGCGATAGTGGTTCTCTTTGTTTG 839 |||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| || Sbjct 780 TGATGTTATTGCAGGGAATCGTCCTTTGATGCGAGCAGGGATAGTGGTTCTCTTTGTATG 839 Query 840 TCTTGCCATCTATGTTTTCAGACCTTTAATGTTCTACATTGTTAAACAAACGCCTTCCGG 899 | |||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| Sbjct 840 TATTGCCATCTATGTTTTCAGACCGTTAATGTTCTACATTATTAAACAAACACCTTCCGG 899 Query 900 TCGTCCCGTTAAGGCAATCTACTTAACTACAATCATTGTTATGGTCTCTGGATCAGCCAT 959 ||||||||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||| Sbjct 900 TCGTCCCGTCAAGGCAATCTACTTAAGTACAATAATTGTTATGGTTTCTGGTTCAGCCAT 959 Query 960 TCTTGCGAATTGGTGCAAGCAATCTATTTTCATGGGACCTTTCATCTTAGGTCTTGCAGT 1019 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 960 TCTTGCCAATTGGTGCAAGCAATCTATTTTCATGGGACCTTTCATCTTAGGTCTTGCTGT 1019 Query 1020 TCCTCATGGTCCTCCTTTAGGTTCTGCAATCATTCAGAAGTACGAGTCCGCTATATTCGG 1079 ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct 1020 TCCTCATGGTCCTCCTTTAGGTTCTGCGATCATTCAGAAGTATGAGTCGGCTATATTCGG 1079 Query 1080 AACTTTTATTCCGTTTTTCGTTGCTTCATCTTCCACGGAGATTGACATTTCGGCTTTATT 1139 ||||||| ||||||||||| |||||||||||||||||||||| || |||||||||||||| Sbjct 1080 AACTTTTCTTCCGTTTTTCATTGCTTCATCTTCCACGGAGATCGATATTTCGGCTTTATT 1139 Query 1140 TGATTGGGAAGATCTCAGTGGCATTATTCTCATCATGATAACATCTTTCGTTGTCAAATT 1199 || |||||||| ||||| ||| ||||| ||||||||| |||||||||| || ||||| || Sbjct 1140 TGGTTGGGAAGGTCTCAATGGTATTATACTCATCATGGTAACATCTTTTGTCGTCAAGTT 1199 Query 1200 CATCTTGACTACTGTTGCTGCTTTGTTCTATCGTATGCCGATGGAAGACTGCTTCGCTAT 1259 |||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||| | Sbjct 1200 CATCTTTACTACTGTTCCTGCTTTGTTCTATGGTATGCCGATGGAAGATTGCTTCGCTCT 1259 Query 1260 ATCTCTTATCATGTCTTTTAAAGGCATCTTCGAGCTCGGTGCCTATGCCTTGGCCTACCA 1319 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1260 ATCTCTTATCATGTCGTTTAAAGGCATCTTCGAGCTCGGTGCCTACGCCTTGGCCTACCA 1319 Query 1320 AAGAGGGTCTGTCCGTCCAGAGACCTTCACTGTCGCGTGTCTTTACATAATGTTGAATTC 1379 |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| || Sbjct 1320 AAGAGGGTCTGTCCGTCCCGAGACCTTCACTGTGGCGTGTCTTTACATAACGTTGAACTC 1379 Query 1380 CGCAATCATTCCTCCGATCTTGCGGTACTTATACGATCCTTCGAGGATGTACGCGGGGTA 1439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 CGCAATCATTCCTCCGATCTTGCGGTACTTATACGATCCTTCGAGGATGTACGCGGGGTA 1439 Query 1440 CGAGAAGCGGAATATGCAGCACCTGAAACAAAACTCTGAGCTAAGGATTCTGTCTTGCAT 1499 ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1440 CGAGAAGCGGAATATGCAGCATTTGAAACCAAACTCTGAGCTAAGGATTCTGTCTTGCAT 1499 Query 1500 TTACAGAACCGAAGATATAAGTCCAACGATCAATCTTCTCGAAGCTACTTGTCCGTCCCG 1559 ||||||||| || ||||||||||||| ||| |||||||| ||||||| |||||||||||| Sbjct 1500 TTACAGAACTGATGATATAAGTCCAATGATTAATCTTCTTGAAGCTATTTGTCCGTCCCG 1559 Query 1560 GGAATCTCCTGTAGC-ATCCTACGTCCTCCACTTGATGGAGCTGGTAGGACAAGCCAATC 1618 ||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||| |||| Sbjct 1560 GGAATCTCCTGTAGCTA-CCTACGTTCTCCACTTGATGGAGCTTGTAGGACAAGCAAATC 1618 Query 1619 CGATTTTCATTTCTCACAAATTGCAAACTCGCAGAACAGAGGAGACGTCTTATTCAAACA 1678 |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 CGATCTTCATTTCACATAAATTGCAAACTCGCAGAACAGAGGAGACGTCTTATTCAAACA 1678 Query 1679 ATGTACTTGTCTCCTTTGAAAAATTCCACAAAGATTTTTATGGCTCGGTCTTCGTAAGTA 1738 |||||||||||||||||||||| || | |||||||| ||||| |||||||||||||| | Sbjct 1679 ATGTACTTGTCTCCTTTGAAAAGTTTCGTAAAGATTTCTATGGTTCGGTCTTCGTAAGCA 1738 Query 1739 TCTACACGGCCTTATCTATGCCTGATACAATGCACGGAGACATCTGTATGCTTGCTCTTA 1798 ||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||| | Sbjct 1739 CCTACACGGCTTTATCTATGCCCGATACGATGCACGGAGATATATGTATGCTTGCTCTCA 1798 Query 1799 ACAACACTACTTCCCTCATACTCCTTCCTTTTCACCAAACTTGGTCTGCTGACGGATCCG 1858 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1799 ACAACACTACTTCTCTCATACTCCTTCCTTTTCACCAGACTTGGTCTGCTGACGGATCAG 1858 Query 1859 CTCTCATCTCAAACAGCAACATGATCAGGAACCTTAACAAGAGCGTTCTCGACGTGGCAC 1918 |||| ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1859 CTCTTATCTCTAACAATAACATGATCCGGAACCTTAACAAGAGCGTTCTCGACGTGGCAC 1918 Query 1919 CGTGTTCTGTCGGAATCTTTGTATACCGAAGCAGTTCCGGACGGA---------G----- 1964 | |||||||||||| |||||||||||||||||||||||||||||| | Sbjct 1919 CTTGTTCTGTCGGAGTCTTTGTATACCGAAGCAGTTCCGGACGGAAAAACATCAGTTCCG 1978 Query 1965 -A---A---CCATCAATGACACCGTTTCAAACTTATCATCTTACAATATATGTATGATCT 2017 | | ||||||||| ||| ||| |||||||||||||||||||||| |||||||||| Sbjct 1979 GACGGAAAACCATCAATGGCACAGTTCCAAACTTATCATCTTACAATATTTGTATGATCT 2038 Query 2018 TCCTAGGCGGTAAAGACGATAGAGAAGCAGTGACACTTGCAACACGAATGGCCCGTGACC 2077 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2039 TCCTAGGCGGTAAAGACGATAGAGAAGCAGTGACACTTGCTACACGAATGGCCCGTGACC 2098 Query 2078 CGAGAATCAACATAACTGTTGTCCGAATGATCACTACCGATGAGAAAGCACGAGAAAACT 2137 | || ||||| ||||| |||| ||| |||||||||||||||||||||||||||| ||| Sbjct 2099 CAAGGATCAATATAACCATTGTTCGACTGATCACTACCGATGAGAAAGCACGAGAGAACA 2158 Query 2138 CAGAGTGGGATAAAATGCTTGACGATGAAATACTTAGAGAAGTGAAGAGCAATACATTAG 2197 | | ||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||| Sbjct 2159 CGGTGTGGGATAAAATGCTTGACGATGAACTTCTTAGAGACGTGAAAAGCAATACATTAG 2218 Query 2198 TAGACATTTTCTACTCGGAGAAAGCGGTTGAAGACGCGTCTGAGACATCGGGTTTGCTGA 2257 |||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||| | Sbjct 2219 TAGACATTTTCTACTCGGAGAAAGCGATTGAAGACGCGGCTGAAACATCGAGTTTGCT-A 2277 Query 2258 A-ATCGATGGTAAGCGATTTCGATATGTTCATAGTGGGAAGAGGGAAAGGAAGGAAGAGT 2316 | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 2278 AGATCGATGGTAAGCGATTTCGATATGTTCATAGTGGGAAGAGGGAACGGAAGGACGAGT 2337 Query 2317 GTGTTCACAGATGGGCTTGAGGAATGGAGTGAGTTTAAGGAGCTTGGTATTATTGGGGAC 2376 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2338 GTGTTCACAGAAGGGCTTGAGGAATGGAGTGAGTTTAAGGAGCTTGGTATTATTGGAGAT 2397 Query 2377 TTATTGACTTCACAGGATTTTAATTGCCAAGCTTCTGTTTTGGTTATACAACAACAACAA 2436 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2398 TTATTGACTTCACAGGATTTTAATTGCCAAGCTTCTGTTTTGGTTATACAACAACAACAG 2457 Query 2437 CTTATGATTTAG 2448 || ||||||||| Sbjct 2458 CTAATGATTTAG 2469 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 121585719990 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5