BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489147
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22920.1 | Symbols: | CHY-type/CTCHY-type/RING-type Zinc fi... 1722 0.0
> AT5G22920.1 | Symbols: | CHY-type/CTCHY-type/RING-type Zinc
finger protein | chr5:7664991-7667265 FORWARD LENGTH=1262
Length=1262
Score = 1722 bits (932), Expect = 0.0
Identities = 1116/1199 (93%), Gaps = 35/1199 (3%)
Strand=Plus/Plus
Query 1 CTTCCCCTGATTCTGATTACCAAAC-T--TCAATACATTTCTTCAAATTACGTTTCTTTT 57
||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 12 CTTCCTCTGTTTCTGATTACCAAACGTCGTCAATACATTTCTTCAAATTACGTTTCTTTT 71
Query 58 AATCTTTCGTTACTCTCCAA-GAATTTCT-TTATCTGATTGATGTTGTTTTGAAGTAAGA 115
| |||||||||||||| ||| ||||| | |||||||||| ||||| || ||||||||
Sbjct 72 ATTCTTTCGTTACTCT-CAACAAATTT-TGATATCTGATTGGTGTTGATTCCAAGTAAGA 129
Query 116 AAGATCAAAACTTTAAGTAAA-TATGGAGATGGGTTTCCATGAAAATGAGCAAAATCAAG 174
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 130 AAGATCAAAACTTTAGGTAAAGTATGGATATGGGTTTCCATGAAAATGAGCAAAATCAAG 189
Query 175 AATTTGCGAATCTAATGGAGATTGGATCTGGGCATTACGGGTGCTCACATTATAGAAGAC 234
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 190 AATTTGCGAATCTAATGGAGATTGGATCTGGGCATTACGGGTGTTCACATTATAGAAGAC 249
Query 235 GATGCAAGATTAGAGCACCATGTTGTGATGAGATTTTTGATTGCAGACATTGCCACAACG 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GATGCAAGATTAGAGCACCATGTTGTGATGAGATTTTTGATTGCAGACATTGCCACAACG 309
Query 295 AAGCTAAGGATTCTCTTCATATTGAACAGCATCATAGACATGAACTTCCTCGGCATGAAG 354
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 310 AAGCTAAGGATTCTCTTCATATTGAACAGCATCATAGACATGAGCTTCCTCGACATGAAG 369
Query 355 TTTCAAAGGTCATATGCTCTCTTTGTGAGACAGAACAAGACGT-CAAGCAAAACTGCTCC 413
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 370 TTTCAAAGGTCATATGCTCGCTTTGTGAGACAGAACAAGACGTTCA-GCAAAACTGCTCC 428
Query 414 AACTGTGGTGTATGTATGGGGAAGTACTTCTGCTCGAAATGCAAGTTCTTCGACGATGAT 473
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 429 AATTGTGGTGTATGTATGGGGAAGTACTTCTGTTCAAAATGCAAGTTCTTCGACGATGAT 488
Query 474 CTTTCCAAGAAGCAATATCACTGCGATGATTGTGGGATTTGCCGGACCGGAGGAGAAGAA 533
||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 489 CTTTCCAAGAAGCAATATCACTGTGATGAGTGTGGGATTTGCAGGACCGGAGGAGAAGAA 548
Query 534 AACTTTTTCCATTGCAAAAGATGTCGATGTTGCTACTCCAAAATTATGGAGGACAAACAC 593
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 549 AACTTTTTCCATTGCAAAAGATGCCGATGTTGCTACTCCAAAATTATGGAGGACAAACAC 608
Query 594 CGATGTGTTGAAGGCGCAATGCATCACAATTGCCCGGTTTGTTTTGAGTATCTGTTTGAT 653
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CAATGTGTTGAAGGCGCTATGCATCACAATTGCCCGGTTTGTTTTGAGTATCTGTTTGAT 668
Query 654 TCCACAAGAGATATCACGGTCCTACGATGTGGTCACACTATGCATTTAGAATGCACGAAA 713
|| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 669 TCAACAAGAGATATCACTGTCCTACGATGTGGTCACACTATGCATCTAGAATGCACGAAA 728
Query 714 GATATGGGGCTACATAACCGATACACATGCCCTGTATGCTCCAAATCCATATGTGACATG 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GATATGGGGCTACATAACCGATACACATGCCCTGTATGCTCCAAATCCATATGTGACATG 788
Query 774 TCCAATTTGTGGAAGAAACTTGATGAAGAGGTTGCCGCATACCCAATGCTAAAGTTGTAT 833
|| ||| |||||||||||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct 789 TCTAATCTGTGGAAGAAACTTGATGAAGAGGTTGCTGCATACCCAATGCCAAAGATGTAT 848
Query 834 GAAAACAAGATGGTATGGATTCTTTGCAATGACTGTGGCTCAAACACGAACGTTCGGTTT 893
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 849 GAAAACAAGATGGTATGGATTCTCTGCAATGACTGCGGCTCAAACACGAACGTTCGGTTT 908
Query 894 CATTTGATCGCGCATAAATGCAGTAGCTGCGGTTCCTACAACACAAGACAGACGCAGAGA 953
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 909 CATTTGATCGCGCATAAATGCAGTAGCTGTGGTTCCTACAATACAAGACAGACACAGAGA 968
Query 954 GGCTCTGATAGTCACTCTTGCTCCTCTGGAATGCTTCAGGTTGTTGGTTCAACTGGTTAA 1013
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 969 GGCTCTGATAGTCACTCTTGCTCCTCTGGAATGCCTCAGGTTGTTGGTTCAACCGGTTAA 1028
Query 1014 GTAATACATTAACCAGAGATGGTTTTGGTGTCTAAATTTCCCAAGAGGAGATTATTTGTA 1073
| | |||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1029 TT--T---TTAACCAGAGCTGGTTTTGGTGTCTGAATTTCCCATGAGGAGATTATTTGTA 1083
Query 1074 CT----AT----------CAGTCAATGCCTCTGGTTGTT-----T-ATATCATCAGAGAT 1113
|| || |||||||||||| |||||||| | ||||||||| ||||
Sbjct 1084 CTTTCTATAGTTTGGTATCAGTCAATGCCTTTGGTTGTTAACAATTATATCATCACAGAT 1143
Query 1114 TCATAAGCTGCTTTGAGCCAATCCTACTCGCAAGTCTAGACCATTATAGCCCAAAACAA 1172
||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1144 TCAAAAGCTGCTTTGAGCCAATCCAACTTGCAAGTCTAGACCATTATAGCCCAAAACAA 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57529824570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5