BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489149
Length=1952
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22940.1 | Symbols: F8H | FRA8 homolog | chr5:7676938-767917... 2883 0.0
> AT5G22940.1 | Symbols: F8H | FRA8 homolog | chr5:7676938-7679179
FORWARD LENGTH=1956
Length=1956
Score = 2883 bits (1561), Expect = 0.0
Identities = 1839/1969 (93%), Gaps = 35/1969 (2%)
Strand=Plus/Plus
Query 1 GCCGAGCTCTATTCTGCTCCATTG-CCATCACCATGTGACGACCTTCTCTCTCTAAATTC 59
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GCCGAGCTCTATTCTGCTCCATTGCCCATCACCATGTGACGACCTTCTCTCTCTAAATTC 60
Query 60 TCTCTGTACTCTGaaaaaaaTTGTTCTTTAtttttttt-ttttGGTTTCTTAATGATTTG 118
|||||||||||||||||||| ||||| |||||||| | | |||||||||||||||||
Sbjct 61 TCTCTGTACTCTGAAAAAAA---CTCTTT-TTTTTTTTGTGTGGGTTTCTTAATGATTTG 116
Query 119 TTATAACCTTGTTGGATTCAAACCAAACCTACACGAGAGAATGATGAGAAGTAGATCACC 178
|||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 117 TTATGACCCTGTTGGATTCAAACCAAACCCACACGAGAGAATGATGAGAAGTAGATCACC 176
Query 179 GATTTTGTTCCAAATACATTCAACGACTCTTTCTCTACATTTCTCCCAAATCTCTG---- 234
| ||||| | ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 177 GGTTTTG-T---AATTCTTTCAACGACTCTTTCTCTACATTTCTCCCAAATCTCTGTCTC 232
Query 235 TTGA---T--TTT-GCTAAATCAAGCAATGTCGCTTGACATAAAGAGACCGAACATCAAC 288
|||| | ||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 233 TTGAGTTTGATTTAGCTAAATCAAGCAATGTCGCTTGACATAAAGAAACCGAACATCACC 292
Query 289 AAGACGAAGAAGAAGAAGACAGGTTTCGTCGTGAAAATGCAGCTTAATAACAACAACAGA 348
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 293 AAGACGAAGAAGAAGAAGACAGGTTTCGTCGTAAAAATGCAGCTTAAT---AACAACAGA 349
Query 349 GGAGGAAATAAAAGAAACATCTTTATCTTCTTCTTCTTCAGAAATTATTACACATGGATC 408
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 350 GGAGGAAATAAAAGAAACATCTTTATCTTCTTCTTCTTCAGAAACTATTACACATGGATC 409
Query 409 CTCTGGTTTTTCCTCTCTCTTTATTTCTTCACATCTTACTTCTCCGTCGAAGACCAATCC 468
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 410 CTCTGGTTTTGCCTCTCTCTGTATTTCTTCACATCTTACTTCTCCGTCGAAGACCAATCC 469
Query 469 CCACCGTCGTCAATACGTCTCTTGTCTAACCACAAAACGTCGTCGTCTCTCCCATCTCGT 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TCACCGTCGTCAATACGTCTCTTGTCTAACCACAAAACGTCGTCGTCTCTCCCATCTCGT 529
Query 529 GCTCTCATCGAATCTTCCGCCATTAAAACCAACTCCTTTGGTTTATTCAGCGGAATGAAG 588
||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||
Sbjct 530 GCTCTCATCGAATCTTCCGCCATTAAAACCACCTCCATTGGTTTGTTCACCGGAATGAAG 589
Query 589 ATATATGTTTACGATTTACCGGCGAGTTTTAACGACGATTGGGTCACGGCATCAGACCGG 648
||||| |||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 590 ATATACGTTTACGATTTACCGGCGAGTTATAACGACGATTGGGTTACAGCATCAGACCGT 649
Query 649 TGCGCTA-CTCATCTTTTTGCGGCGGAGGTAGCCATCCATCGTGCGCTTCTCTCCTCCGA 707
||||||| | || || || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 650 TGCGCTAGC-CACCTCTTCGCGGCGGAGGTAGCTATCCACCGTGCACTTCTCTCCTCCGA 708
Query 708 CGTCCGTACGTTAGACCCAGAAGAAGCTGATTTCTACTTCGTCCCTGTCTACGTTTCTTG 767
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 709 CGTCCGTACGTTAGACCCAGATGAAGCTGATTACTTCTTCGTCCCTGTCTACGTTTCTTG 768
Query 768 CAATTTCTCCACATCCAACGGCTTCCCTTCTCTAAGCCACGCTCGCTCTCTCCTCAGCTC 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 769 CAATTTCTCCACATCCAACGGCTTCCCTTCTCTAAGCCACGCTCGCTCTCTCCTTAGCTC 828
Query 828 CGCCGTCGATTTTCTCTCCGACCATTACCCGTTTTGGAATC-GGACTCAAGGCGCTGACC 886
||||||||||||||||||||| |||||||| |||||||| | ||| ||||||| ||||||
Sbjct 829 CGCCGTCGATTTTCTCTCCGATCATTACCCATTTTGGAA-CAGGAGTCAAGGCTCTGACC 887
Query 887 ATGTCTTTGTCGCTTCCCATGACTTTGGTGCGTGCTTTCACGCAATGGAGGATATGGCGA 946
| ||||| |||||||||||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 888 ACGTCTTCGTCGCTTCCCATGACTTTGGCGCATGCTTCCACGCAATGGAGGATATGGCTA 947
Query 947 TAGAGGAAGGGATTCCAGAATTTCTGAAGAAATCGATAATTTTACAAACGTTTGGAGTTA 1006
||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 948 TAGAGGAAGGGATTCCAAAATTTATGAAGAGATCAATAATTTTACAAACGTTTGGAGTTA 1007
Query 1007 AATACAATCATCCATGTCAAGAAGTGGAACATGTTGTTATCCCGCCGTATATTCCGCCGG 1066
| ||||| ||||||||||||||||||||||||||||| || || || |||||||| ||||
Sbjct 1008 AGTACAAGCATCCATGTCAAGAAGTGGAACATGTTGTGATTCCTCCTTATATTCCACCGG 1067
Query 1067 AGAGTGTTCAAAGAGCTATTGAAAAAGCTCCGGCGAACGGACGGCGAGACATTTGGGCAT 1126
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1068 AGAGTGTTCAAAAAGCTATTGAAAAAGCTCCGGTGAACGGACGGCGAGACATTTGGGCGT 1127
Query 1127 TTTTCCGGGGAAAAATGGAAGTCAACCCTAAGAATATAAGCGGACGCTTTTACAGCAAGG 1186
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1128 TTTTCCGGGGAAAAATGGAAGTCAACCCTAAGAATATTAGCGGACGCTTTTACAGCAAGG 1187
Query 1187 GAGTGAGAACGGCGATTCTAAAGAAATACGGAGGGAGAAGGCGGTTTTATCTTAACCGGC 1246
||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||
Sbjct 1188 GAGTGAGAACGGCGATTCTAAAGAAATTCGGAGGAAGAAGGCGGTTTTATCTAAACCGGC 1247
Query 1247 ACCGGTTTGCTGGATATCGATCAGAAATCGTGAGATCAGTGTTTTGTCTCTGTCCTCTCG 1306
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1248 ACCGGTTTGCTGGATACCGATCAGAAATCGTGAGATCAGTGTTTTGTCTCTGTCCTTTAG 1307
Query 1307 GGTGGGCACCATGGAGTCCTAGGCTAGTGGAATCCGCCGTGTTAGGTTGTGTTCCCGTTG 1366
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1308 GGTGGGCACCATGGAGTCCTAGACTAGTGGAATCCGCCGTGTTAGGTTGTGTTCCCGTTG 1367
Query 1367 TTATCGCCGATGGGATT-AAGTTACCGTTCTCGGAGACGGTACGGTGGCCGGAGATATCA 1425
||||||||||||||||| || |||||||||||||||||||||| |||||||| || |||
Sbjct 1368 TTATCGCCGATGGGATTCAA-TTACCGTTCTCGGAGACGGTACAATGGCCGGAAATCTCA 1426
Query 1426 CTTACGGTGGCGGAAAAAGACGTGAGGAGTCTACGAAAGATTTTAGAACACGTGGCGGCT 1485
|| ||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||
Sbjct 1427 CTAACGGTGGCGGAGAAAGACGTGAGGAATCTACGAAAGGTTTTGGAACACGTGGCGGCT 1486
Query 1486 ACTAATTTGTCTGTGATTCAGAGAAACTTACATGAACCGGTGTTTAAGCGGGCCCTCTTG 1545
||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1487 ACTAATTTGTCTGCAATACAAAGAAACTTACATGAACCGGTGTTTAAGCGGGCCCTCTTG 1546
Query 1546 TACAATGTGCCGATGAAAGAAGGAGACGCCACGTGGCATATTCTCGAGTCGTTGCGGAGG 1605
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1547 TACAATGTGCCGATGAAAGAAGGAGACGCCACGTGGCATATTCTCGAGTCGTTGTGGAGG 1606
Query 1606 AAGCTCGATGATCGGTCGTACAGAAGGTCAACGGTTTTAAGGCAATGAGAAGTCGACACG 1665
||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |
Sbjct 1607 AAGCTCGATGATCGGTCGTACAGAAGGTCAAGGGTTTTAAGCCAACGAGAAGTCGACATG 1666
Query 1666 TAAGATTCTATGTCTAAATGGATGCTAGGCTGGAATTTTTCGGACTGTTTCGGAATTGGT 1725
|| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 TAGGATTCTGTGTCTGAATGGATGCTAGGCTGGAATTTTTCGGACTGTTTCGGAATTGGT 1726
Query 1726 AAACCGGGAATGTCTCGAGTGGGGTCCACAACGTGAGGGGGATTAACTCGGGCACGTGAG 1785
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1727 TAACCGGGAATGTCTCGAGTGGGGTCCACAACGTGAGGGG-ATTAACTCGGGCACGTGAG 1785
Query 1786 ATGTTTGCTGAGTTGGCGATTACTGAGTGGA-T-T-AACGTGCCCCAGGGAAGTGAAAGT 1842
|||||| ||||| |||| |||| |||||||| | | ||||||||||||||||||||||||
Sbjct 1786 ATGTTTACTGAGCTGGCAATTATTGAGTGGAATATTAACGTGCCCCAGGGAAGTGAAAGT 1845
Query 1843 GTAAAGTATTGCTGACGTGTAATTCTTTTGATGAGTAGGCATATAAATTCTTTTGAATAT 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846 GTAAAGTATTGCTGACGTGTAATTCTTTTGATGAGTAGGCATATAAATTCTTTTGAATAT 1905
Query 1903 AAAGTTGATCGAAATGCAAAGTTAAATCAAATCTCAACTTCAGTTTAAC 1951
| ||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1906 A--GTTGATCGAAATGCAAAGTTATATCAAATGTCAACTTCAGTTTAAC 1952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96686249670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5