BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489150
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein | chr5:768... 1280 0.0
> AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein | chr5:7681305-7682903
FORWARD LENGTH=948
Length=948
Score = 1280 bits (693), Expect = 0.0
Identities = 805/855 (94%), Gaps = 24/855 (3%)
Strand=Plus/Plus
Query 1 TCGCAACAATGGAGAGAGTGATGAACATCATAAAGCCAAAGCCTGATCCCAAACAACTCT 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 68 TCGCAACAATGGAGAGAGTGATGAACATCATAAAGCCAAAACCTGATCCCAAACAACTGT 127
Query 61 TGCGTGATTGGCAACGCAAATTACGTCAGGAGTGTCGTAACATCGAACGCCAAATCCGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TGCGTGATTGGCAACGCAAATTACGTCAGGAGTGTCGTAACATCGAACGCCAAATCCGAG 187
Query 121 ATATACAGAAAGAAGAAAGAAATGTACAAAAAGCTATTAAAGAAGCTGCAAAGAGGAATG 180
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 188 ATATACAGAAAGAAGAGAGAAATGTACAGAAAGCTATTAAAGAAGCTGCAAAGAGGAATG 247
Query 181 ATATGGTCTCTGCTAAGGCACTTGCTAAGGAAATTGTGAGTTCTAGAAGAACAGTGAACC 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 248 ATATGGTCTCTGCTAAGGCACTTGCTAAGGAAATTGTGAGTTCGAGAAGAACAGTGAACC 307
Query 241 GGTTATATGAAAATAAGGCGCAGATGAATTCGATATCAATGCACCTTGGGGAGAGTGTTG 300
|||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 308 GGTTATATGAGAATAAGGCACAGATGAATTCTATATCAATGCATCTTGGAGAGAGTGTTG 367
Query 301 CGATTGCTCGAACAGTTGGGCATTTGTCGAAGAGTGCGGAGGTTATGAAGCTTGTTAATA 360
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 368 CGATTGCTCGAACAGTTGGGCATTTGTCGAAGAGCGCAGAGGTTATGAAGCTTGTTAATA 427
Query 361 ATCTCATGAAGGCTCCACAAATGGCTGCAACAATGCAGGAATTTAGCAAAGAGATGACTA 420
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 428 ATCTCATGAAGGCTCCACAGATGGCTGCAACAATGCAAGAATTTAGCAAAGAGATGACTA 487
Query 421 AGGCCGGAGTTATTGAGGAGTTTGTGAATGAGGCCATTGACAATGCTCTAGATTCAGAGG 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AGGCCGGAGTTATTGAAGAGTTTGTGAATGAGGCCATTGACAATGCTCTAGATTCAGAGG 547
Query 481 ATATGGAAGAAGAGATCGATGAAGAGGTTGATAAAGTATTGACAGCAATTGCTGGAGAAA 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 ATATGGAAGAAGAGATTGATGAAGAGGTTGATAAAGTATTGACAGCAATTGCTGGAGAAA 607
Query 541 CCGCTGCAGAGCTCCCAGAAGCTGTTAGAAAGGAAAGGATAAAGGTACCTGCACAGAAGG 600
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 608 CCGCTGCAGAGCTCCCAGTAGCTGTTAGGAAGGAGAGGATAAAGGTACCTGCACAGAAGG 667
Query 601 CGAGCACTTCTCGTGAGGAAGAGGCAATTGCAGAGGGTGTTGATGATGAGGAAGAATTGG 660
|||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 668 CGAGCACTTCACGTGAGGAAGAGGCAGTTGCAGAGGGTGTTGATGATGAGGAGGAATTGG 727
Query 661 AGGAAATTCGAGCTCGGCTCGCTAAAGTTAGATCCTAACT-TTT--A---A-------A- 706
|||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 728 AGGAAATTCGAGCTCGGCTCGCTAAAGTTAGATCCTAACTGTTTCTAGTGACTCTTTTAA 787
Query 707 -CGCTATTCTTGATTGATATGATCAACTTTTGATGAGAACAGAAGGCGATCGCAGTGTAT 765
|||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 788 ACGCTATTCTTGATTGATATGATCAACTTTTGATGAGAACACAAGGAGATCGCACTGTAT 847
Query 766 TGTATAATATAAATGAAAATACCATGCTTC---G---AAA-TACATGTAAACATTATTGT 818
||||||||||||||||| | |||||||||| | ||| |||||||||||||||||||
Sbjct 848 TGTATAATATAAATGAATA-ACCATGCTTCAAAGTTCAAAATACATGTAAACATTATTGT 906
Query 819 TAACGAAGT-TTTTT 832
||||||||| |||||
Sbjct 907 TAACGAAGTGTTTTT 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40538956629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5