BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489151

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22970.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   623    5e-178


> AT5G22970.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G60000.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:7686253-7686779 REVERSE LENGTH=527
Length=527

 Score =  623 bits (337),  Expect = 5e-178
 Identities = 436/483 (90%), Gaps = 10/483 (2%)
 Strand=Plus/Plus

Query  1    GGTATCGATCATGGCCCTAATGCTCTTTGCTAGGTCTGGATCCGCACGTGCCGCCACACT  60
            |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  4    GGTATCGATCATGGTCCTAATGCTCTTTGCTAGGTCTGGATCTGCACGTGCCGCCACACT  63

Query  61   TCTCGTATCCAACGAGATGCAAACACATT-CTAATATTCCCGTTTTCGTCACGTGCCGCC  119
            | |||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||
Sbjct  64   TATCGTATCCAACGAGATGCAAACAC-TTCCAAATGTTCCCGTTTTCGTCACGTGCCGCC  122

Query  120  CAACCCCTGAGCTGTCCAAATCCGTACCTTTGGGTCAAAAGATGT-TGATAGACATCCCA  178
            |||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct  123  CAACCCCTGAACTGTCCAAATCCGTACCTTTGGGTCAAAAGAT-TATGATAGAGATCCCA  181

Query  179  AGCATTGCCGGAGATAATGAAAAAGCGGAGGGATCTACACAGTTGCCACATACGGAATGT  238
            ||||||||||| ||||||||||||| || |||||||| ||||||  ||||||||  ||||
Sbjct  182  AGCATTGCCGGCGATAATGAAAAAGTGGCGGGATCTAGACAGTTATCACATACGCTATGT  241

Query  239  GTAGGAACGTTTGACACTAAGAAAAATTCCGGACCTTACGGGATGTGGTTCGTTTTGTAC  298
            |||||||||||| ||| |||||||| ||||| | ||||||||||||||||||||||||||
Sbjct  242  GTAGGAACGTTTTACAATAAGAAAAGTTCCGCAGCTTACGGGATGTGGTTCGTTTTGTAC  301

Query  299  GATTCA---GATAAAGATTACTGCAAAGACTCGTGTTCCATCGTTGTCAAAGACTATGGA  355
            ||||||   || |||||| ||||||||||||||||||||||  ||| |||||||||||||
Sbjct  302  GATTCATCAGACAAAGATCACTGCAAAGACTCGTGTTCCATTTTTGCCAAAGACTATGGA  361

Query  356  TTTTATCGTTGGAACAATAACAAGAAAACCTGGGATCTCATCCCTCCGAGGTTTTGG-TT  414
            |||||| ||||||||||||||||||||||||  |||||||||||||| ||||||||| ||
Sbjct  362  TTTTATAGTTGGAACAATAACAAGAAAACCTTCGATCTCATCCCTCCAAGGTTTTGGATT  421

Query  415  GAACTAGTAAATCTTCTATTTCCGTGTTTTTGTTATATTTCCGGATTCGATCTATATAAA  474
             ||||||| |||||| ||||||||| ||   |||||| |||| ||||||| |||||||||
Sbjct  422  -AACTAGTTAATCTTTTATTTCCGT-TTAACGTTATACTTCCAGATTCGAACTATATAAA  479

Query  475  TTT  477
            |||
Sbjct  480  TTT  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5