BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489152
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22980.1 | Symbols: scpl47 | serine carboxypeptidase-like 47... 2146 0.0
> AT5G22980.1 | Symbols: scpl47 | serine carboxypeptidase-like
47 | chr5:7688084-7690648 FORWARD LENGTH=1685
Length=1685
Score = 2146 bits (1162), Expect = 0.0
Identities = 1395/1508 (93%), Gaps = 14/1508 (1%)
Strand=Plus/Plus
Query 27 TTTTCTCCTCATGATTTTCATCTTTTCTCAGTTTTCGCTCTCAACTTCTAAAAGGATCCT 86
||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 18 TTTTCTCTTCATGCTTTTCATCTTTTCTCAGTCTTGGCTCTCAACTTCTAAAAGGATCCT 77
Query 87 AAACAATCCCTCTGTTTTCTCACCGTCTCCGAGTTCGTCGAGCAGTAATGCAGAGAAACT 146
|||||||||||||||||||||| ||||| || || ||||| |||||||||||| |||
Sbjct 78 AAACAATCCCTCTGTTTTCTCATCGTCTTTGAATTTTTCGAGTGGTAATGCAGAGAGACT 137
Query 147 TATAAAATCATTCAATCTAATGCCTAAGTATGACGTTAATGTCATCCCAAAAGGAAGCCC 206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 TATAAAATCATTCAATCTAATGCCTAAGTATGACGTTAATGTCATCCCAAAAGGAAGCCT 197
Query 207 CGATGCTCCAAGACTCATTGAGAGACAAATTGATTTTCCAGCGACGA-TCGGTTCCCAAA 265
||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||
Sbjct 198 TGATGCTCCAAGACTCATTGAGAGACAAATTGATTTTCTGGCGAC-AGCCGGTTCCAAAA 256
Query 266 ACGCTTCAAAAGGTCCATCTGTTCAAGAGTTTGGCCACTACGCTGGTTATTACAGCCTTC 325
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 ACGCTTCCGTTGGTCCTTCTGTTCAAGAGTTTGGCCACTACGCTGGTTATTACAGCCTTC 316
Query 326 CTCACTCCAAATCAGCCAAGATGTTCTACTTCTTTTTTGAATCACGGAACAAAA-ATACC 384
|||| || |||||||||||||||||||| ||||||||||||||||||||||||| | |||
Sbjct 317 CTCATTCAAAATCAGCCAAGATGTTCTATTTCTTTTTTGAATCACGGAACAAAACA-ACC 375
Query 385 GATCCGGTTGTGATATGGTTAACCGGTGGACCGGGCTGCAGTAGCAGTGTCGCTATGTTC 444
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 376 GATCCGGTTGTGATCTGGTTAACCGGTGGACCGGGCTGCAGTAGTAGTGTGGCTATGTTT 435
Query 445 TACGAGAACGGTCCCTTCAAGCTCTCAGAGGATCTGTCTCTC-ACTTGGAACGATTTTGG 503
|| || |||||||| |||||| ||||| ||||| |||||||| | |||||||||||||||
Sbjct 436 TATGAAAACGGTCCGTTCAAGATCTCAAAGGATTTGTCTCTCTA-TTGGAACGATTTTGG 494
Query 504 ATGGGACAAGGTATCCAATCTGATCTACGTGGATCAGCCAATTGGGACCGGTTTCAGTTA 563
|||||||||||||||||| | |||||||||||||||||| | ||||| |||||||||||
Sbjct 495 CTGGGACAAGGTATCCAATATAATCTACGTGGATCAGCCAGTCGGGACTGGTTTCAGTTA 554
Query 564 CACATCTGCCGAAAGCGATCTCCGGCATGACGAGGCTGGTGTCAGTAATGACCTTTATGA 623
|||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 555 CACATCTGACGAAAGCGATATCCGGAATGACGAGGATGGTGTCAGTAATGACCTTTATGA 614
Query 624 TTTTTTACAGGCtttttttAAAGAGCATCCAAAATTCGTAAAGAACGATTTCTTTATTAC 683
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 615 TTTCTTACAGGCTTTCTTTAAAGAGCATCCAAAATTCGTAAAGAATGATTTCTTTATTAC 674
Query 684 CGGTGAATCTTACGCTGGTCACTACATTCCGGCTTTGGCTTCACGTGTTCACAGTGGAAA 743
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 675 CGGTGAATCTTACGCTGGTCACTACATTCCGGCTTTGGCTTCACGTGTTCATAGTGGCAA 734
Query 744 CAAAAAGAAAGAAGGAATTCCAATCAACCTTAAGGGTTTTGCGATTGGTAACGGTTTAAC 803
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CAAAAAGAAAGAAGGGATTCCAATCAACCTTAAGGGTTTTGCGATTGGTAACGGTTTAAC 794
Query 804 CAACCCCGAGATCCAATATGGTGCTTATGGGGATTATGCACTGCAAATGAAGTTGATTTC 863
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 795 CAACCCGGAGATCCAATATGGTGCGTATGGGGATTATGCACTGCAAATGAAGTTGATTTC 854
Query 864 AGAGTCTGATCACGAGAGCATCAAGCAAGATTACGTTGAGTGTCAAAATTTAACCAAAAA 923
||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 855 AGAGTCTGACCACGAGAGCCTCAAGCAAGATTACGTTGAGTGTCAAAATATAACCAAAAA 914
Query 924 ATGCAATCTTGATGGTGGTTTAGCTTGTGATTCTGCTTTTGATGTTTGCAACAATATCTT 983
||||| ||||| ||||||||||| ||||||||||||| |||| ||||||| || ||||||
Sbjct 915 ATGCAGTCTTGGTGGTGGTTTAGTTTGTGATTCTGCTGTTGAAGTTTGCACCAGTATCTT 974
Query 984 CAACATGATAGCGGCAAAAAAGAGAGGCATAAATTATTATGACATTAGGAAGAAATGTGT 1043
||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 975 CAACAAGATAGTGGCAAAAAAAAGTGGCCTAAATTATTATGACATTAGGAAGAAATGTGT 1034
Query 1044 GGGAAGCTTGTGTTATGACTTTTCGAAGATGGAAAAT-TTCTTGAACAAAGAAAACGTAC 1102
||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||
Sbjct 1035 GGGGAGCTTGTGTTATGACTTTTCGAGGATGG-AAATATTCTTGAACAAAGAAAATGTAC 1093
Query 1103 GGAAAGCCTTAGGAGTTGGAGATATCGAA-TTTGTGTCTTGTAGTAGCACCGTTTATGAT 1161
|||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||
Sbjct 1094 GGAAAGCCTTAGGAGTTGGAGATATC-AAGTTTGTGTCTTGTAGTAGTACAGTTTATGAT 1152
Query 1162 GCAATGACAGAGGATTGGATG-ATTAATCTTGAGGTCAAGATTCCGACTCTTGTCAACGA 1220
||||||| |||||| |||||| | ||||||||||||||||| ||| |||||||||| ||
Sbjct 1153 GCAATGATAGAGGACTGGATGCA-GAATCTTGAGGTCAAGATCCCGTCTCTTGTCAATGA 1211
Query 1221 TGGAATCAATCTTCTAATTTATGCGGGAGAATATGATCTCATTTGCAATTGGCTTGGAAA 1280
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1212 TGGAATCAATCTTCTAGTTTATGCTGGAGAATATGATCTCATTTGCAATTGGCTTGGAAA 1271
Query 1281 CTCGAGGTGGGTAGACCAAATGAATTGGTCAGGCCAAAAGGGTTTTGGATCAGCGAAAAA 1340
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1272 CTCGAGGTGGGTAGACCAAATGAATTGGTCAGGCCAAAAGGGTTTTGGATCAGCAAAAAA 1331
Query 1341 CGTACCATTCTTAGTAGATGGTAAAGAAGCCGGTTTACTGAAAAATTATGGTCCTCTCAC 1400
|||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1332 CGTATCATTCTTAGTAGATGGTAAAGAAGCCGGTTTACTGAAAAATCACGGTCCTCTCAC 1391
Query 1401 TTTTCTTAAGGTTCATGACGCTGGACACATGGTTCCGATGGATCAACCTAAGGCTTCTCT 1460
||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1392 TTTTCTTAAGGTTTATAACGCTGGACACATGGTTCCGATGGATCAACCAAAGGCTTCT-T 1450
Query 1461 T-CAAATGCTTCAGAATTGGATGCAAGGAAAGCTTAGCACTCCGAATGTTCGGGGATTTG 1519
| ||||||||||||||||||||||||||||||||||| ||| | ||| | ||||||
Sbjct 1451 TGCAAATGCTTCAGAATTGGATGCAAGGAAAGCTTAGGACTACTCCTGTACTAGGATTTA 1510
Query 1520 GTCAATGA 1527
||||||||
Sbjct 1511 GTCAATGA 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5