BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489156
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23030.1 | Symbols: TET12 | tetraspanin12 | chr5:7726788-772... 1417 0.0
> AT5G23030.1 | Symbols: TET12 | tetraspanin12 | chr5:7726788-7727809
FORWARD LENGTH=926
Length=926
Score = 1417 bits (767), Expect = 0.0
Identities = 878/931 (94%), Gaps = 9/931 (1%)
Strand=Plus/Plus
Query 1 TCTCTCCGTCCCAAATAACCGCCAATAAACAATGCTCCGACTAAGCAACGCCGCCGTAAT 60
|||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1 TCTCCCCCTCCCAAATAACCGCCGATAAACAATGCTCCGGCTAAGCAACGCCGCCGTAAT 60
Query 61 AACAACCAATGCAATCCTCGCATTGATCGGCCTCGCCGCTCTATCTTTCTCCGTCTACGT 120
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AACAACCAATGCAATTCTCGCATTGATCGGCCTCGCCGCTCTATCTTTTTCCGTCTACGT 120
Query 121 CTACGTTCAAGGCCCTTCACAGTGTCAACGCTTCGTTCAAAACCCTCTCATCGTAACCGC 180
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 121 CTACGTTCAAGGCCCATCACAGTGTCAACGTTTCGTTCAAAACCCTCTCATTGTAACTGC 180
Query 181 -GATCCTCCTCTTCTTCATCTCTTCCTTAGGCCTTATCGCTGCTCTCTACGGAAGCCACA 239
| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 181 GGCT-CTCCTCTTCTTCATCTCGTCCTTAGGCCTTATCGCTGCTCTCTACGGTAGCCACA 239
Query 240 TCATCATCActctctacctcttcttccttttcctctccattcttctccttcttgtcctct 299
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 TCATCATCACACTCTATCTCTTCTTCCTTTTCCTCTCCATTCTTCTGCTTCTTGTCCTCT 299
Query 300 ccgtctttatcttcctcGTCACGAATCCCACCGCCGGAAAAGCGTTTTCCGGCAAAGGAA 359
| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 300 CTGTCTTTATCTTCCTCGTCACGAATCCCACCGCCGGAAAAGCGTTATCCGGTAGAGGAA 359
Query 360 TAGGCAATGTTAAGACCGGAGA-TCTCCAGAACTGGATCGGGAACCATTTCCTTCGTGGG 418
|||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 360 TAGGCAATGTCAAGACCGGAGATTAT-CAGAACTGGATCGGGAACCATTTCCTTCGTGGG 418
Query 419 AAGAACTGGGAAGGGATCACCAAATGTTTGTCTGATTCTAGGGTTTGTAAAAGGTTTGGT 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGAATTGGGAAGGGATCACCAAATGTTTGTCTGATTCTAGGGTTTGTAAAAGGTTTGGT 478
Query 479 CCACGTGACGTTGACTTTGACTCCAAACATCTCTCTAATGTACAGTTTGGTTGCTGTCGA 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 CCACGTGACATTGACTTTGACTCCAAACATCTCTCTAATGTACAGTTTGGTTGTTGTCGA 538
Query 539 CCTCCCGTAGAATGTGGGTTCGAATCAAAGAATGCCACGTGGTGGGCAGTTCCAGCGACA 598
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 539 CCTCCCGTAGAATGTGGGTTCGAATCAAAGAATGCCACGTGGTGGACAGTTCCTGCCACA 598
Query 599 GCGACTACGGCGATCACAGGGGATTGTAAGACATGGAGTAACACGCAGAGCCAGTTATGT 658
|||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 599 GCGACTACGGCGATTATAGGGGATTGTAAGGCATGGAGTAACACGCAGAGACAGTTATGT 658
Query 659 TACGGGTGCGAGTCGTGTAAGATTGGAGTTTTAAAAGGGATAAGAAAAAGATGGAGGATA 718
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TACGCGTGCGAGTCGTGTAAGATTGGAGTTTTAAAAGGGATAAGAAAAAGATGGAGGATA 718
Query 719 CTTCTTGTCGTCAATCTCCTTCTTATCCTTCTCGTCGTGTTTCTTTACTCATGTGGCTGT 778
||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 719 CTTATTGTCGTCAATCTCCTTCTTATCCTTCTCGTCGTTTTTCTTTACTCGTGTGGCTGT 778
Query 779 TGTGTGAGAAAGAACAATCGTGTTCCATGGAAGCGCCGGTTCTTTTAAAAACTCCTTCCA 838
|| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 779 TGCGTGAGAAAGAACAATCGTGTTCCATGGAAGCGCCGGTTCTTCTAACAACTCTTTCCA 838
Query 839 TTTCGTTT-CCAAATTAATTAATTAATTCTTCCTA-ATTGTTTATGTTTTTGAAATATTT 896
||| |||| |||||| | ||||||||||||| || ||| ||| ||||||||||||||||
Sbjct 839 TTT-GTTTTCCAAATGA-TTAATTAATTCTTTATATATT-TTTCTGTTTTTGAAATATTT 895
Query 897 AGTTGATGTTTGATGTTTCTTTTAGTGAAGT 927
|||||||||||||||||||||||||||||||
Sbjct 896 AGTTGATGTTTGATGTTTCTTTTAGTGAAGT 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5