BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489157
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23040.1 | Symbols: CDF1 | Protein of unknown function (DUF3... 1382 0.0
> AT5G23040.1 | Symbols: CDF1 | Protein of unknown function (DUF3353)
| chr5:7729317-7731036 REVERSE LENGTH=1031
Length=1031
Score = 1382 bits (748), Expect = 0.0
Identities = 856/908 (94%), Gaps = 7/908 (1%)
Strand=Plus/Plus
Query 23 CGACGGAGGAACCATGTCCTCGTCTCTTCTTCTCTCCGGTTCTGCTGTATCTTCTTCGTT 82
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 94 CGACGGAGGAACCATGTCCTCGTCTCTTCTTCTCTCCGGTTCTACTGTATCTTCTTCGTT 153
Query 83 TATCGCTCCATCGAAGCTTTCTTTGGTACGAAATTCCAATAAGACATCACTGTTACCATT 142
|||||||||||| |||| |||| | ||||||||||||| |||||||||||||||||||||
Sbjct 154 TATCGCTCCATCTAAGCCTTCTCTCGTACGAAATTCCAGTAAGACATCACTGTTACCATT 213
Query 143 TCGGAATGTTTCAAGAAGCTTCAAAAGCGTTAGGTGCTCCGTTGATTCTTCATATGGAGG 202
||| |||||||| ||||||||||||| ||| | |||| ||||||||||||||||||||||
Sbjct 214 TCGTAATGTTTCGAGAAGCTTCAAAACCGTCAAGTGCACCGTTGATTCTTCATATGGAGG 273
Query 203 TAACGTCCCCACGTTCCCTCGGACCAGAGTTTGGGACCCGTACAAACGTCTAGGAGTTAG 262
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 274 CAATGTTCCCACGTTCCCTCGGACGAGAGTTTGGGACCCGTACAAACGTCTAGGAGTTAG 333
Query 263 TCCATATGCTTCCGAGGAAGAAATCTGGGCCTCTCGTAACTTTCTCTTACAGCAGTATGC 322
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 334 TCCATATGCTTCCGAGGAAGAAATCTGGGCCTCTCGTAACTTTCTTTTACAGCAGTACGC 393
Query 323 TGGACATGAGAGAAGCGAAGAATCAATAGAAGGCGCCTTTGAGAAGCTTCTGATGTCTAG 382
||||||||| ||||||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct 394 TGGACATGAAAGAAGCGAAGAGTCTATAGAAGGAGCCTTTGAGAAGCTTCTCATGTCTAG 453
Query 383 TTTTATCAGAAGGAAGAAGTCTAAAATCAATCTTAAAACAAGGTTGAAGAAGAAAGTTGA 442
||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 454 TTTTATCAGAAGGAAGAAGACTAAAATCAATCTTAAATCAAAGTTGAAGAAGAAAGTTGA 513
Query 443 GGAATCTCCTCCCTGGCTCAAAGCTCTTCTCGATTTTGTTGAAATGCCTCCCAAGGACAC 502
|||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 514 GGAATCTCCTCCGTGGCTCAAAGCTCTTCTCGATTTCGTTGAAATGCCTCCCATGGACAC 573
Query 503 TATATTCAGAAGACTCTTCCTCTTTGCCTTCATGGGTGGTTGGAGTATCATGAACTCAGC 562
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 574 TATTTTCAGAAGACTTTTCCTCTTTGCCTTCATGGGTGGTTGGAGTATCATGAACTCTGC 633
Query 563 AGAAGGCGGTCCTGCCTTTCAGGTGGCGGTATCGTTGGCTGCGTGCGTATATTTCCTGAA 622
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 634 AGAAGGCGGTCCTGCGTTTCAGGTGGCGGTATCATTGGCTGCGTGCGTATATTTTCTGAA 693
Query 623 TGAGAAGACAAAGAGCTTGGGGAGAGCTTGCCTAATCGGAATTGGAGCTTTAGCTGCCGG 682
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 694 TGAGAAGACAAAGAGCTTGGGGAGAGCTTGCTTAATCGGAATTGGAGCTTTAGTTGCCGG 753
Query 683 GTGGTTCTGCGGTTCGATAATCATTCCCATGATTCCAACGTTTCTCATTCAGCCGACATG 742
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 754 GTGGTTCTGCGGTTCGTTAATCATTCCCATGATTCCGACGTTTCTCATTCAGCCTACATG 813
Query 743 GACACTCGAGCTCCTAACATCATTGGTTGCTTATGTGTTTTTGTTTCTTTCTTGTACTTT 802
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 814 GACACTCGAGCTCCTAACATCACTGGTCGCTTATGTGTTTTTGTTTCTTTCTTGTACTTT 873
Query 803 CCTCAAGTAAGTTGCG--GT--TTT-ATCCAAACGCTTTTTTGTTCTTTT-GCCCAAACA 856
||||||||||||| || || ||| |||||||| |||||| |||||||| ||||| |||
Sbjct 874 CCTCAAGTAAGTTACGTTGTGGTTTTATCCAAACTCTTTTT-GTTCTTTTCGCCCAGACA 932
Query 857 TTTACAGAACCTTTCGGAAAAATTAGTGAAAGTTGTTAAGTGTTTGATTGGTTTCACAGT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TTTACAGAACCTTTCGGAAAAATTAGTGAAAGTTGTTAAGTGTTTGATTGGTTTCACAGT 992
Query 917 TTTCTTTT 924
||||||||
Sbjct 993 TTTCTTTT 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5