BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489158
Length=2461
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23050.1 | Symbols: AAE17 | acyl-activating enzyme 17 | chr5... 3725 0.0
> AT5G23050.1 | Symbols: AAE17 | acyl-activating enzyme 17 | chr5:7731269-7735439
REVERSE LENGTH=2450
Length=2450
Score = 3725 bits (2017), Expect = 0.0
Identities = 2295/2429 (94%), Gaps = 19/2429 (1%)
Strand=Plus/Plus
Query 46 ctctctc--AAAAATGGCGTACAAATCCCTAAATTCAATCACCAGATCTGATATCGAAGC 103
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 28 CTCTCTCAAAAAAATGGCGTACAAATCCCTAAATTCAATCACCAAATCTGATATCGAAGC 87
Query 104 TCTAGGAATCTCCGGTGATGTCTCCGAGAAGCTACTCAAAGACCTCGATGAGATCATTCA 163
||||||||||||||||||||||||||||||||| |||| ||| ||||| || || |||||
Sbjct 88 TCTAGGAATCTCCGGTGATGTCTCCGAGAAGCTTCTCAGAGATCTCGAAGACATTATTCA 147
Query 164 CGGTTCCTCCATGCCGCCGGAGACGTGGATTCAGATTTCTCGGCGAATCCTTCACCCTAA 223
|||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 148 CGGTTCATCCACGCCGCCGGAGACGTGGATTCAGATTTCTCGGCGGATCCTTCACCCTAA 207
Query 224 TCTCCCTTTCTCTTTTCACCAGATGATGTATTATGGTTGCTACAAGGATTTCGGACCCGA 283
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 208 TCTCCCTTTCTCTTTTCACCAGATGATGTATTACGGTTGCTACAAGGATTTCGGACCCGA 267
Query 284 CCCACCCGCTTGGTTACCCGACCCGAAGGTTGCTTCTTTAACTAACGTAGGCAAGTTACT 343
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 268 CCTACCCGCTTGGATACCCGACCCGAAGGTTGCTTCTTTAACTAACGTAGGCAAGTTATT 327
Query 344 AGAAAGGCGTGGCAAAGAGTTTTTAGGTGAAAATTACAAGAATCCAATTTCGAGTTTCTC 403
||||| ||| ||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 328 AGAAAAGCGAGGCAAAGAGTTTTTAGGTGGAAATTACAAGAATCCAGTTTCGAGTTTCTC 387
Query 404 GAGTTTTCAAGAGTTCTCTGTATCAAATCCTGAGGTGTATTGGAAAACTGTATTGGATGA 463
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 CAGTTTTCAAGAGTTCTCTGTATCAAATCCTGAGGTGTATTGGAAAACTGTATTGGATGA 447
Query 464 GTTAAACATAGTGTTTTCTGTACCTCCTAAGTGTATATTAGAGAAAGATACATCTGGAGA 523
|||||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 448 GTTAAACATATTGTTCTCTGTACCTCCTAAGTGTATATTAGAGAAGGATACTTCTGGAGA 507
Query 524 TAATCCTGGAGGTATTTGGCTTCCTGGAGCTTACTTGAATCCTGCTAGAAATTGTTTGAC 583
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 508 TAATCCTGGAGGTAAATGGCTTCCTGGAGCTTACTTGAATCCTGCAAGAAATTGTTTGAC 567
Query 584 TAATGGTTGCAAGAGAAGATTGGATGATATTGTGATTCGATGGCGTGATGAAGGAAGTGA 643
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 568 TAATGGTTTCAAGAGAAGATTGGATGATATTGTGATTCGATGGCGTGATGAAGGAAGCGA 627
Query 644 TGATCTTCCTGTGAATACCATGACACTTTTGGAGTTACGATCGCAAGTCTGGTTAGCTGC 703
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 628 TGATCTTCCTGTGAATACCATGACACTTTTGGAGTTAAGATCGCAGGTCTGGTTAGCTGC 687
Query 704 ACATGCTCTTAGTGCTTTGGATTTAGAGGAAGAGTCAGCAATCGCTGTTGATATGCCAAT 763
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 688 ACATGCTCTTAGTGCTTTGGGTTTGGAGGAAGAGTCAGCAATCGCGGTTGATATGCCAAT 747
Query 764 GAATGTTGAGTCTGTGATCATATACCTTGCTATTGTCTTAGCAGGCCACGTAGTTGTTTC 823
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 748 GAATGTTGAGTCTGTGATCATATACCTTGCTATTGTTTTAGCTGGCCACGTAGTTGTTTC 807
Query 824 AATAGCTGACAGTTTCTCTCCCCGTGAAATATCAACACGGCTTAAAATTTCAAAAGCAAA 883
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 808 AATAGCTGATAGTTTCTCTCCCCGTGAAATATCAACACGGCTTAAAATATCAAAAGCAAA 867
Query 884 AGCCATATTCACACAGGATGTGATCATTCGTGGTGATAAAAGTATTCCCCTCTATAGAAG 943
|||||| || || ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 868 AGCCATTTTTACTCAGGATGTGATTATTCGTGGTGATAAAAGTATTCCTCTCTATAGAAG 927
Query 944 AGTCATTGATGCAGAAGCACCTCTGGCAATTGTTGTCCCAGCTAGAGGCTCTAGCTGCAG 1003
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 AGTCGTTGATGCAGAAGCACCTCTGGCAATTGTTGTCCCAGCTAGAGGCTCTAGCTGCAG 987
Query 1004 AATGAAGCTGCGCGAGAAGGATTTGTCTTGGAACAACTTTTTGGGAAAGGCAAGAAATTT 1063
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 988 AATGAAGCTGCGCGAGAAGGATTTGTCTTGGAACAACTTTTTGGGAAACGCAAGAAATTT 1047
Query 1064 GAGAGGTGTGGAATATGTTGCTGTAGAGAAACCAGCAGGAGCTTACACGAACATCCTTTT 1123
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1048 GAGAGGCGTGGAATATGTTGCTGCAGAGAAACCAGCAGGAGCTTACACGAACATCCTTTT 1107
Query 1124 CTCATCCGGAACCACTGGTGAGCCAAAGGCTATTCCATGGACGAACATTTCTCCTCTGAA 1183
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 CTCATCAGGAACCACTGGTGAGCCAAAGGCTATTCCATGGACGAACATTTCTCCTCTGAA 1167
Query 1184 ATCTGCTGCTGATGCCTGGTGCCACTTGGATGTTCATCGAGGGGATGTTGTTGCTTGGCC 1243
||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1168 ATCTGCTGCTGATGCTTGGTGCCATTTGGATGTTCAGCGGGGGGATGTTGTTGCTTGGCC 1227
Query 1244 GACCAACCTTGGGTGGATGATGGGTCCGTGGCTTGTTTATGCTTCTTTGATAAATGGGGC 1303
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1228 GACCAACCTTGGGTGGATGATGGGACCGTGGCTTGTTTATGCTTCCTTGATCAATGGGGC 1287
Query 1304 TTGCATGGCATTATACAATGGATCACCTCTTGGCCCTACCTTTGCCAAGTTTGTGCAGGA 1363
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1288 TTGCATGGGATTATACAATGGATCACCTCTTGGTCCTACCTTTGCCAAGTTTGTGCAGGA 1347
Query 1364 TGCCGAGGTAACAGTTCTAGGCGTGATACCAAGCATTGTTCGGACATGGCAAAACTCGAA 1423
|||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1348 TGCCGAGGTATCAGTGCTAGGCGTGATACCAAGCATTGTCCGGACATGGCAAAACTCAAA 1407
Query 1424 CTCTACTTCTGGCTATGATTGGTCACAAATCCGTTGTTTTGGTTCCACTGGTGAAGCTTC 1483
||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1408 CTCCACTTCAGGCTATGATTGGTCACGGATCCGTTGTTTTGGTTCCACTGGTGAAGCTTC 1467
Query 1484 AAACATAGACGAGTATCTATGGCTGATGGGCAGAGCACATTACAAACCCGTAATCGAGTA 1543
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1468 AAACATAGACGAGTATCTATGGTTAATGGGCAGAGCACATTACAAACCCGTAATCGAGTA 1527
Query 1544 TTGTGGCGGAACTGAGATTGGAGGCAGTTTTATCTCAGGTTCTTTGCTTCAGCCTCAGTC 1603
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1528 TTGTGGCGGAACTGAGATTGGAGGCAGTTTTATCTCAGGTTCTTTGCTTCAACCTCAGTC 1587
Query 1604 GCTGGCTGCTTTTAGCACAGCTGCCATGGGTTGCAAGCTTTTCATTCTCGGTGAAGATGG 1663
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1588 GCTGGCTGCTTTTAGCACAGCTGCCATGGGTTGCAAGCTTTTCATTCTCGATGAAGATAG 1647
Query 1664 CAATCCTATTCCTCCATACGCAGCAGGAGTAGGCGAATTGGCTCTTTGTCCTCACCTGTT 1723
|||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct 1648 CAATCCTATTCCTCCATATGCTGCAGGAGTAGGCGAATTGGCTCTTTGTCCTCACATGTT 1707
Query 1724 TGGAGCTTCAAGCACCCTCCTGAACGGAAATCACTTCAAAGTTTACTTCCAGGGAATGCC 1783
||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1708 TGGAGCTTCAAGCACTCTTCTGAACGGTAATCACTTCAAAGTTTACTTCCAAGGAATGCC 1767
Query 1784 CACCTTCCAAGGACAGATTTTAAGAAGACATGGGGATTTATTTGAACGGACTTCAAAAGG 1843
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1768 CACCTTCCAAGGACAGATCTTACGAAGACATGGGGATTTATTTGAACGGACTTCAAAAGG 1827
Query 1844 ATACTACCGTGCTCACGGACGTGCTGATGACACAATGAATCTTGGTGGCATAAAGGTCGG 1903
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1828 ATACTACCGTGCTCATGGACGTGCTGATGACACAATGAATCTTGGTGGTATAAAGGTCGG 1887
Query 1904 TTCTATTGAGATCGAACGAGTCTGTAATTCCGTAGATGACAGTGTTCTGGAGACAGCAGC 1963
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1888 TTCTATTGAGATCGAACGAGTCTGTAATTCCGTTGATGACAGTGTTCTGGAGACAGCAGC 1947
Query 1964 CATCGGTGTTCCACCTCCTAGTGGCGGTCCTGAGCAGCTAGTAATCACTGTTGTGTTCAA 2023
||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1948 CATTGGTGTTCCACCTCCTAGTGGGGGTCCTGAGCAGCTAGTAATCGCTGTTGTGTTCAA 2007
Query 2024 GAGCCCAGAAATATCGAAA-CACGATTTAAACCTCTTGAAGAAGTCCTTCAACTCTGAGA 2082
|||||||||| | || ||| | ||| || ||||| |||||||||||||||||||| ||||
Sbjct 2008 GAGCCCAGAATTTTC-AAATCCCGACTTGAACCTGTTGAAGAAGTCCTTCAACTCCGAGA 2066
Query 2083 TACAAAAGAAACTGAATCCATTGTTCAAGGTATCATCTGTTGTGACTCTGCCTTCTTTAC 2142
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 2067 TACAAAAGAAACTGAATCCTTTGTTCAAGGTATCATCTGTTGTGACTCTTCCTTCTCTAC 2126
Query 2143 CAAGGACGGCCACAAATAAGGTTATGAGAAGAGTTCTAAGGCAACAACTTACTCAGACTA 2202
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2127 CGAGGACGGCCACAAATAAGGTTATGAGAAGAGTTCTAAGGCAACAGCTTACTCAGACTG 2186
Query 2203 GTCTAAAGTCGAAGCTATGAGGCAATTGCTATCCAATACCAAATGTTGGTTTTTGCCATT 2262
||||||| ||||||||||||||||||| || || ||||||||||||||| ||||||||||
Sbjct 2187 GTCTAAACTCGAAGCTATGAGGCAATTTCTCTCTAATACCAAATGTTGGGTTTTGCCATT 2246
Query 2263 CACA--A--CA-T-TT-GGTCTTTGTTGTAA-AATCCACAACCATGTCTGTATCAATAAA 2314
|||| | || | || |||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 2247 CACAGGAAACAATATTTGGTCTTTGTTGTAAGAATCCACATCCATGTCTGTATCAAGAAA 2306
Query 2315 TGATTCTCAATTCACATAAATAAAGAGTGGATCTAGTGTACATACATGTAGTGAGATCCT 2374
||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct 2307 TGATTCTCAATTCACATAAATAA-GAGTGGAGCTAGTGTACATACATCTAGTGAGATCCT 2365
Query 2375 TCTCCATGTGAATCTCA--CTCAATTTTGGTTATGATTTTATTTCGAAACAAAAACCTGA 2432
| ||| | ||| | | ||||| ||||||||||||||||||||| |||||||||| |
Sbjct 2366 TGTCCCTC--AATTTGAATCTCAACTTTGGTTATGATTTTATTTCGTAACAAAAACC--A 2421
Query 2433 TATTAAATAGGACTTGCTATCCAAAACGC 2461
||||||||| ||||||||||||||||||
Sbjct 2422 TATTAAATAAAACTTGCTATCCAAAACGC 2450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122106339262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5