BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489162
Length=3047
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23080.1 | Symbols: TGH | SWAP (Suppressor-of-White-APricot)... 3803 0.0
> AT5G23080.1 | Symbols: TGH | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein | chr5:7742940-7748933 REVERSE
LENGTH=3123
Length=3123
Score = 3803 bits (2059), Expect = 0.0
Identities = 2259/2354 (96%), Gaps = 20/2354 (1%)
Strand=Plus/Plus
Query 1 TCTCGGTGGTGAAGACAATGGGGTCAGACGAGGAAGATTTCGTGTTTCATGGGACACCAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 28 TCTCGGTGGTGAAGACAATGGGGTCAGACGAGGAAGATTTCGTGTTTCATGGAACGCCAA 87
Query 61 TAGAGCGCGAAGAAGAAATCGCGAGTCGGAAGAAGAAAGCAGTCGCTGGGGCTTCAGGCA 120
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 88 TAGAGCGCGAAGAAGAAATCGCAAGCCGGAAGAAGAAAGCAGTCGCTGGGGCTTCTGGCA 147
Query 121 ATCTTAGAACTCTTCCTGCTTGGAAGCAAGAGGTGACTGATGAAGAAGGCCGGAGAAGGT 180
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 148 ATCTTAGAACTCTCCCTGCTTGGAAGCAAGAGGTGACTGATGAAGAAGGCCGTAGAAGGT 207
Query 181 TCCATGGAGCATTTACTGGTGGATATTCTGCTGGGTATTACAATACAGTGGGATCAAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 208 TCCATGGAGCATTTACTGGTGGATATTCTGCTGGGTATTACAATACAGTTGGATCAAAAG 267
Query 241 AGGGTTGGGCTCCACAGTCATTTACATCTTCAAGGAAGAACAGAGCTGGAGCGAGAAAGC 300
|||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 268 AGGGCTGGGCTCCACAGTCATTTACATCATCAAGGCAGAACAGAGCTGGAGCGAGAAAGC 327
Query 301 AAAGTATTTCAGACTTTCTAGATGAAGATGAAAAGGCTGATATGGAGGGCAAGTCACTTT 360
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 328 AAAGTATTTCAGACTTTCTAGATGAAGATGAAAAGGCGGATATGGAGGGCAAATCACTGT 387
Query 361 CTGCGAGCTCACAATTTGATACATTTGGGTTTACGGCAGCTGAACATTCCCGCAAGCAAG 420
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 388 CTGCGAGCTCACAATTTGACACATTTGGGTTTACGGCAGCCGAACATTCCCGCAAGCATG 447
Query 421 CTGAGAAAGAACAGCATGAGAGGCCATCAGCCATTCCTGGCCCAGTTCCTGATGAACTTG 480
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 448 CTGAGAAAGAACAGCATGAGAGGCCATCAGCCATTCCTGGCCCTGTTCCTGACGAACTTG 507
Query 481 TTGCTCCAGTTTCAGAGTCAATTGGGGTCAAACTTTTGCTAAAGATGGGATGGCGGCGTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TTGCTCCAGTTTCAGAGTCAATTGGGGTCAAACTTTTGCTAAAGATGGGATGGCGGCGTG 567
Query 541 GTCATTCAATAAAGGATGTGCGTGCCAGTTCAGATGCTCGTAGAGAAGCTAGAAAAGCAT 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GTCATTCAATAAAGGAAGTGCGTGCCAGTTCAGATGCTCGTAGAGAAGCTAGAAAAGCAT 627
Query 601 TCTTAGCCTTCTCTACTGATGAGATTACAAAGGAAACGCCCGACTCACTGGTTTCGGAGA 660
|||||||||||| ||||||||||| ||||||||||||||||||||| || ||||| ||||
Sbjct 628 TCTTAGCCTTCTATACTGATGAGAATACAAAGGAAACGCCCGACTCGCTTGTTTCTGAGA 687
Query 661 CTGACGCGGAAACTTCTCTGGGTCCACAGTTTAGTGAAGATATTAAAATTTCTGAAAGCA 720
|||| | |||||||||||| | | |||||||||||||||||||||||||||
Sbjct 688 CTGAAGTGGAAACTTCTCT--G------G----GTGAAGATATTAAAATTTCTGAAAGCA 735
Query 721 CTCCTGTATATGTTCTGAATCCAAAGCAAGATCTGCATGGATTAGGATATGATCCTTTTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CTCCTGTATATGTTCTGAATCCAAAGCAAGATCTGCATGGATTAGGATATGATCCTTTTA 795
Query 781 AGCATGCTCCTGAATTTAGAGAAAAGAAAAGATCTCGCTTGTCTGCCAATAAGGAGGTTG 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 796 AGCATGCTCCTGAATTTAGAGAAAAGAAAAGATCTCGCATGTCTGCCAATAAGGAGGTTG 855
Query 841 GCTTCAGAAAACCTTTATCAATGAAGGAAAGTCTTTTTGGACCCAAATCAGGAAAGATTG 900
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GTTTCAGAAAACCTTTATCAATGAAGGAAAGTCTTTTTGGACCCAAATCAGGAAAGATTG 915
Query 901 CTCCGGGTTTTGGCATTGGAGCACTTGAGGAACTTGATGTTGAGGATGAAGATGTCTATG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 CTCCGGGTTTTGGCATTGGAGCACTTGAGGAACTTGATGTTGAGGATGAAGATGTCTATG 975
Query 961 CTGGTTACGATTTTGATCAGACTTATGTCATAGAAGACGAACAGCCAGCAAGACCGAGCA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 976 CTGGTTACGATTTTGATCAGACTTATGTCATAGAAGACGAACAGCCAGCAAGACAGAGCA 1035
Query 1021 ATGACAGTAGACTGAGGTTAACCTCAAAAGAGCATGACGTTCTGCCAGGTTTTGGAGCTG 1080
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 ATGACAATAGACTGAGGTTAACCTCAAAAGAGCATGACGTTCTGCCAGGTTTTGGAGCTG 1095
Query 1081 CTAAGAATTCTGACTACAGTATGGAGAGATTTAATCCTCCGAATA-TCCCCAAGGATTTT 1139
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 1096 CTAAGAATTCTGACTACAGTATGGAGAGATTTAATCCTCCGA-TAATCCCGAAGGATTTT 1154
Query 1140 GTTGCCCGGCATAAATTTTCTGGTCCTCTTGAGGCTGAAACTAAGCCAACTGTTTCTGCT 1199
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GTGGCCCGGCATAAATTTTCTGGTCCTCTTGAGGCTGAAACTAAGCCAACTGTTTCTGCT 1214
Query 1200 CCTCCAGAAGTTCCTCCCCCTGCAGATAATAATCTGAAACTTCTGATCGAGGGGTTTGCA 1259
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 CCTCCGGAAGTTCCTCCTCCTGCAGATAATAATCTGAAACTTCTGATCGAGGGGTTTGCA 1274
Query 1260 ACTTTTGTTTCCCGTTGCGGGAAACTATACGAGGATCTTTCTAGAGAGAAGAACCAATCA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 ACTTTTGTTTCCCGTTGCGGGAAACTATACGAGGATCTTTCTAGAGAGAAGAACCAATCA 1334
Query 1320 AATCAGCTGTTTGATTTTCTTCGGGAAGGTAACGGTCATGACTACTACAG-AAGAAGGCT 1378
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1335 AATCAGCTGTTTGATTTTCTTCGGGAAGGTAACGGTCATGACTACTAC-GCAAGAAGGCT 1393
Query 1379 GTGGGAGGAGCAGCAAAAGCGCAAAGATCAAAGTAAGCTGACATTAGATGTTAAGCTGTC 1438
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1394 GTGGGAGGAGCAGCAAAAGCGTAAAGATCAAAGTAAGCTGACATTAGATGTTAAGGTGTC 1453
Query 1439 TCCAACCGTTCAGAAAATGACTGCAGAAACCCGTGGCAGCTTATTAGGGGAAAAGCCACT 1498
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1454 TCCAACCGTACAGAAAATGACTGCAGAAACACGTGGCAGCTTATTAGGGGAAAAGCCA-T 1512
Query 1499 T-CAGAGAAGTTTGAAAGAAACCGATACTCCTGCTTCTTCTGGAGGCTCCTTCCAGTTCC 1557
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1513 TGCAGAGAAGTTTGAAAGAAACCGATACTTCTGCTTCTTCTGGAGGCTCCTTCCAGTTCC 1572
Query 1558 CGACCAATCTTTCTGACACATTCACCAAATCAGCTTCATCTCAAGAGGCAGCAGATGCTG 1617
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 CGACCAATCTCTCTGACACATTCACCAAATCAGCTTCATCTCAAGAGGCAGCAGATGCTG 1632
Query 1618 TTAAGCCCTTCAAAGATGATCCGGCTAAACAAGAAAGATTTGAGCAGTTTCTCAAGGAGA 1677
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1633 TGAAGCCCTTCAAAGATGATCCAGCTAAACAAGAAAGATTTGAGCAGTTTCTCAAGGAGA 1692
Query 1678 AATACAAAGGAGGGTTACGTACAACAGACTCCAACAGAGTTAACAGCATGTCGGAATCAG 1737
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1693 AATACAAAGGAGGGTTACGTACAACAGACTCCAACAGAGTTAATAGCATGTCGGAATCAG 1752
Query 1738 CTCGTGCTCAAGAGAGGTTGGACTTTGAGGCTGCAGCTGAGGCAATTGAGAAAGGGAAAG 1797
|||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1753 CTCGGGCACAAGAGAGGCTGGACTTTGAGGCTGCAGCCGAGGCAATTGAGAAAGGGAAAG 1812
Query 1798 CTTACAAGGAGGTCAGACGGGCTACTGAACAGCCTATCGACTTCCTTGCAGGAGGGCTGC 1857
||||||||||||||||||||||||| ||||||||| |||| |||||||| ||||| || |
Sbjct 1813 CTTACAAGGAGGTCAGACGGGCTACCGAACAGCCTCTCGATTTCCTTGCTGGAGGTCTTC 1872
Query 1858 AGTTTACTTCTGGCGGAACAGAGCAAATTAAAGACACTGGCGTGGTAGACATGAAATCGA 1917
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1873 AGTTTACTTCTGGGGGAACAGAGCAAATTAAAGACACTGGAGTGGTAGACATGAAATCGA 1932
Query 1918 GTAAGACGTATCCTAAAAGGGAAGAGTTCCAATGGCGTCCTTCACCTCTTTTGTGCAAGC 1977
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1933 GTAAGACGTATCCTAAAAGGGAAGAGTTCCAATGGCGTCCTTCACCTCTTTTGTGCAAAC 1992
Query 1978 GTTTTGATCTCCCTGATCCGTTCATGGGAAAGCTGCCACCTGCTCCGCGAGCGAGAAACA 2037
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 GTTTTGATCTCCCCGATCCATTCATGGGAAAGCTGCCACCTGCTCCGCGAGCGAGAAACA 2052
Query 2038 AAATGGATTCTCTCATATTCTTGCCAGATACAGTGAAAGCTGCATGTACACGTCAAGTAT 2097
|||||||||||||| |||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 2053 AAATGGATTCTCTCGTATTCTTGCCGGATACAGTGAAAGCTGCATCTGCACGTCAAGTAT 2112
Query 2098 CTGAGTCGCAAGAACCTAAGAAAGAGACATCAATAGAAGAGCCTGAAGTTGAGGTAGAAG 2157
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113 CTGAGTCGCAAGTACCTAAGAAAGAGACATCAATAGAAGAGCCTGAAGTTGAGGTAGAAG 2172
Query 2158 TGGAGAATGTGGAGAGGCCTGTTGATCTTTATAAGGCCATCTTCTCTGATGATTCTGAAG 2217
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2173 TGGAGAATGTGGAGAGACCTGTTGATCTTTACAAGGCTATCTTCTCTGATGATTCTGAAG 2232
Query 2218 ATGATGAAGATCAACCAATAAATGGAAAGATACAAGAGGGTCAAGAAAAGAAGAATGAAG 2277
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2233 ATGATGAAGATCAACCAATGAATGGAAAGATACAAGAGGGTCAAGAAAAGAAGAATGAAG 2292
Query 2278 CGGCTGCAACCACATTAAACCGTCTAATAGCGGGTGACTTTCTT-GAATCACTAGGGAAA 2336
|||||||||||||||||||||| || ||||| || || |||| | ||||| ||||||||
Sbjct 2293 CGGCTGCAACCACATTAAACCGGCTTATAGCTGGCGA-TTTCCTAGAATCTTTAGGGAAA 2351
Query 2337 GAACTAGGGTTCGA 2350
||||||||||||||
Sbjct 2352 GAACTAGGGTTCGA 2365
Score = 929 bits (503), Expect = 0.0
Identities = 615/668 (92%), Gaps = 12/668 (2%)
Strand=Plus/Plus
Query 2387 GCCAATGGAAGAAGAGAGCAAGTCCAGAAGCAAACCCGAAGACTCTTCTGATAAAAGACT 2446
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 2369 GCCAATGGAAGAAGAGATCAAGTCCAGAAGCAAACCCGAAGATTCTTCTGATAAAAGACT 2428
Query 2447 TGATCGATCGGGAATGAAAGAGAAAGTGGAGGAGAAGAGAAGCAGCCTCATACTTGGGTC 2506
||||||| | ||| |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2429 TGATCGACCCGGATTGAAAGAGAAAGTGGAGGAGAAGACAAGCAGCCTCACACTTGGGTC 2488
Query 2507 Tgaagaagaaaagagtagaaaaaagagagagaaatcgccaagaaaa-ggaagTGGTGGCA 2565
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 2489 TGAAGAAGAAAAGAGTAGAAAAAAGAGAGAGAAATCGCCAGGAAAACGG-AGTGGTGGCA 2547
Query 2566 ACAATCTATCATCGGGTGAATCCTCAGGAGATGAACGGAGGAGAAAACGATCTAATAAGA 2625
|| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2548 ACGATCTATCATCGAGTGAATCCTCAGGAGATGAACGGAGGAGAAAACGATATAATAAGA 2607
Query 2626 AGGATAGAC---CCATTGATTCAGAGAGCGATTCATCCAGCGACTACCACAGCAGGGATA 2682
||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2608 AGGATAGACATAGAAACGATTCAGAGAGCGATTCATCCAGCGACTACCACAGCAGGGATA 2667
Query 2683 AGCAAGGTTCaagatcaagaagaaagcgaagagaatcttctagagagaagagaagtagcc 2742
||||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||
Sbjct 2668 AGCAAGGATCAAGATCTAGGAGCAAGCGGAGAGAATCTTCTAGAGAGAAGAGAAGTAGCC 2727
Query 2743 acaagaagCACTCAAAGCATCACAAGACCAAGAAGTCATCTTCTTCTCGGTATAGCTCAG 2802
||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||
Sbjct 2728 ACAAGAAGCACTCAAAGCATCGCAGGACCAAGAAGTCTTCTTCTTCACGGTATAGCTCAG 2787
Query 2803 ACGAAGAACAAAAAGAATCAAGGCGAGAGAAGAAGAGGCGACGAGACTGAAACCTAATCA 2862
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2788 ACGAAGAACAAAAAGAGTCAAGGCGGGAGAAGAAGAGGCGACGAGACTGAAACTTAATCA 2847
Query 2863 AAGCTGTTGACTGATTAAA-CTCGG-GAGATATCAGAGCAGTTGCATAGATTTTTGTATG 2920
|||||||||||||| |||| || || |||| ||||||||| |||||||||||||||| ||
Sbjct 2848 AAGCTGTTGACTGACTAAAACT-GGAGAGAAATCAGAGCACTTGCATAGATTTTTGTGTG 2906
Query 2921 AACACTGAAACAGCGTAGTTTCGAGGTATGCAATGAATGATTCTCTGCACTGTCTCGAGA 2980
|||| ||||| | |||||||| | ||||||| ||||||||| ||||||||||||||||||
Sbjct 2907 AACATTGAAATAACGTAGTTTTGGGGTATGCCATGAATGATGCTCTGCACTGTCTCGAGA 2966
Query 2981 TGGACACAGGTTAGATAGCAAATGATGAGCTTGTTGTTGGGTTCATTGTCTCC-TATGAG 3039
||| || |||||||||||||||||||||||||||||||||||||||| || | | ||||
Sbjct 2967 TGGTCA--GGTTAGATAGCAAATGATGAGCTTGTTGTTGGGTTCATTG-CTTCGTCTGAG 3023
Query 3040 GTAGAGAG 3047
||||||||
Sbjct 3024 GTAGAGAG 3031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151504167860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5