BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489163
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23090.2 | Symbols: NF-YB13 | nuclear factor Y, subunit B13 ... 1411 0.0
AT5G08190.1 | Symbols: NF-YB12 | nuclear factor Y, subunit B12 ... 470 1e-131
> AT5G23090.2 | Symbols: NF-YB13 | nuclear factor Y, subunit B13
| chr5:7749070-7750544 FORWARD LENGTH=1037
Length=1037
Score = 1411 bits (764), Expect = 0.0
Identities = 879/933 (94%), Gaps = 13/933 (1%)
Strand=Plus/Plus
Query 1 TCTTCACGCGCCGTCTCCAAGCTGTTGTAAAAGAAAGTGGGATTCACGCGCTTTTGCGTC 60
||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||| ||
Sbjct 1 TCTTCACGCGCCGTCTCTAAGC-GTTGTAAAAGAAAGTGTGATTCACGCGC-TTTGCTTC 58
Query 61 TTCCGTTTGCCCTAGTCGACTCTGCTAGAGAACACGAAGGAGAGAGAAAGTTCCTCCGAT 120
|||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 59 TTCCGTTTGCCCTAAACGACTCTGCTAGAGAAGACGAAGGAGAGAGAAAATCCCTCCGAT 118
Query 121 AAGATTCCGTACAATCCGATCGACTTCCCGGCACCAGATCTCACCGCGACTCGTCGGATC 180
| |||||||||||||||||||| |||||||| |||||||||||||||||||||| | |
Sbjct 119 TATATTCCGTACAATCCGATCGATTTCCCGGCGCCAGATCTCACCGCGACTCGTC-TA-C 176
Query 181 -TT-CTCTTTGAACCGTGTTGACTCAGTTACGATTAAACAATGGATCCAATGGATATAGT 238
|| | |||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 177 TTTCCGATTTGGTTCGTGTTGACTCAGTTACGATTAAACTATGGATCCAATGGATATAGT 236
Query 239 CGGCAAATCCAAGGAAGACGCTTCTCTTCCAAAAGCGACGATGACTAAGATTATAAAGGA 298
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 237 CGGCAAATCCAAGGAAGACGCTTCTCTTCCAAAAGCTACGATGACTAAAATTATAAAGGA 296
Query 299 GATGTTACCACCAGATGTTCGTGTTGCTAGAGATGCTCAAGATCTTCTAATTGAATGTTG 358
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 297 GATGTTACCACCAGATGTTCGTGTTGCAAGAGATGCTCAAGATCTTCTCATTGAATGTTG 356
Query 359 TGTAGAGTTTATAAATCTTGTATCTTCAGAATCTAATGATGTTTGTAACAAAGAGGATAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGTAGAGTTTATAAATCTTGTATCTTCAGAATCTAATGATGTTTGTAACAAAGAGGATAA 416
Query 419 ACGGACGATTGCTCCTGAGCATGTTCTCAAGGCATTACAGGTTCTTGGTTTTGGAGAATA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACGGACGATTGCTCCTGAGCATGTTCTCAAGGCATTACAGGTTCTTGGTTTTGGAGAATA 476
Query 479 CATTGAAGAAGTTTATGCTGCGTATGAGCAACATAAGTATGAAACTATGCAGGACACACA 538
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 CATTGAAGAAGTCTATGCTGCGTATGAGCAACATAAGTATGAAACAATGCAGGACACACA 536
Query 539 GAGAAGCGTGAAATGGAATAGTGGAGCTCAAATGACTGAAGAGGAAGCAGCAGCTGAGCA 598
||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 537 GAGGAGCGTGAAATGGAACCCTGGAGCTCAAATGACTGAGGAGGAAGCAGCAGCTGAGCA 596
Query 599 ACAACGTATGTTTGCAGAAGCACGTGCAAGAATGAATGGAGGTGTTTCCGTTCCTCAACC 658
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 ACAACGTATGTTTGCAGAAGCACGTGCAAGAATGAATGGAGGTGTTTCGGTTCCTCAACC 656
Query 659 TGAACATCCAGAAACCGACCAGAGAAGTCCGCAAAGCTAACTGAAACCGTAAGGGTAAGA 718
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGAACATCCAGAAACTGACCAGAGAAGTCCGCAAAGCTAACTGAAACCGTAAGGGTAAGT 716
Query 719 GTTAGGCAAGAAAGAA-AACATCCTTTTAACATTCCCTTGTAAGT-GCAGATGCGTCTGT 776
||||||||||||| || |||||||||||||||||||||||||||| ||| |||||| |||
Sbjct 717 GTTAGGCAAGAAAAAACAACATCCTTTTAACATTCCCTTGTAAGTTGCAAATGCGTATGT 776
Query 777 CCTCTGTTTATATGCTCTTAGTATGATATATGTTAGTTAGTGTTTCATGATCTAAAAACA 836
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 777 TCTCTGTTTATATGCTCTTAGTATGATATATGTTAGTTAGTGTTTCACGATCTAAAAACA 836
Query 837 CTTGTGATTCAGATGTAATTAGTAAGCATTCCTTGTTTGGTGTT-ACTTGTGTCTTCTTG 895
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 837 CTTGTGATTCAGATGTAATTAGTAAGCATTCCTTGTTTTGTGTTTACTTGTGTCTT---G 893
Query 896 ACTAAGCACGGTGTGTCAGGTCTACACCAAAGC 928
|||||||| |||| ||||||||||||| |||||
Sbjct 894 ACTAAGCATGGTGGGTCAGGTCTACAC-AAAGC 925
Score = 97.1 bits (52), Expect = 3e-19
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 929 GGATAAATTTGGTGATTGGTGTAATTGTCTTTCCATACACACAATGCGGTCATTGTTTAG 988
|||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 968 GGATAAATTTGGTGATTGGTGTAATTGTTTTTCCATAAACACAATGCAATCATTGTTTAG 1027
Query 989 TGTT 992
||||
Sbjct 1028 TGTT 1031
> AT5G08190.1 | Symbols: NF-YB12 | nuclear factor Y, subunit B12
| chr5:2635902-2637433 FORWARD LENGTH=1002
Length=1002
Score = 470 bits (254), Expect = 1e-131
Identities = 394/462 (85%), Gaps = 8/462 (2%)
Strand=Plus/Plus
Query 214 AAACAATGGATCCAATGGATATAGTCGGCAAATCCAAGGAAGACGCTTCTCTTCCAAAAG 273
|||| |||||||| ||||||||||| || ||||| |||||||| ||||| ||||| ||||
Sbjct 198 AAACTATGGATCCGATGGATATAGTTGGAAAATCAAAGGAAGATGCTTCGCTTCCGAAAG 257
Query 274 CGACGATGACTAAGATTATAAAGGAGATGTTACCAC-CAGATGTTCGTGTTGCTAGAGAT 332
| || ||||| || |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 258 CTACCATGACGAAAATTATAAAGGAGATGTTACC-CGCAGATGTTCGTGTTGCTAGAGAT 316
Query 333 GCTCAAGATCT-TCTAATTGAATGTTGTGTAGAGTTTATAAATCTTGTATCTTCAGAATC 391
||||||||||| | | ||||| |||||||||||||| ||||||||| |||| || || ||
Sbjct 317 GCTCAAGATCTAT-TGATTGAGTGTTGTGTAGAGTTCATAAATCTTATATCGTCGGAGTC 375
Query 392 TAATGATGTTTGTAACAAAGAGGATAAACGGACGATTGCTCCTGAGCATGTTCTCAAGGC 451
||||| || |||||||||||||||||||| || || || |||||||| || ||||| ||
Sbjct 376 GAATGAAGTGTGTAACAAAGAGGATAAACGAACAATAGCCCCTGAGCACGTACTCAAAGC 435
Query 452 ATTACAGGTTCTTGGTTTTGGAGAATACATTGAAGAAGTTTATGCTGCGTATGAGCAACA 511
|||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||
Sbjct 436 TTTACAGGTTCTTGGCTTTGGGGAATACGTAGAAGAAGTTTATGCCGCGTATGAGCAACA 495
Query 512 TAAGTATGAAACTATGCAGGACACACAGAGAAGCGTGAA-ATGGAATAGTGGAGCTCAAA 570
||| |||||||| |||||||| | |||||||| ||||| ||| ||||| ||||| | |
Sbjct 496 TAAATATGAAACCATGCAGGATTCGCAGAGAAGTGTGAAGATG-AATAGCGGAGCAGAGA 554
Query 571 TGACTGAAGAGGAAGCAGCAGCTGAGCAACA-ACGTATGTTTGCAGAAGCACGTGCAAGA 629
|||| ||||| || || ||||| || ||||| | | |||||||||||||| || ||||||
Sbjct 555 TGACGGAAGAAGAGGCGGCAGCGGAACAACAGAGG-ATGTTTGCAGAAGCTCGAGCAAGA 613
Query 630 ATGAATGGAGGTGTTTCCGTTCCTCAACCTGAACATCCAGAA 671
||||||||||||||| | ||||||||||| || || | ||||
Sbjct 614 ATGAATGGAGGTGTTACAGTTCCTCAACCAGAGCAACTAGAA 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48576420149
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5