BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489170
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23130.1 | Symbols: | Peptidoglycan-binding LysM domain-con... 1733 0.0
> AT5G23130.1 | Symbols: | Peptidoglycan-binding LysM domain-containing
protein | chr5:7781196-7783601 FORWARD LENGTH=1741
Length=1741
Score = 1733 bits (938), Expect = 0.0
Identities = 1354/1543 (88%), Gaps = 76/1543 (5%)
Strand=Plus/Plus
Query 75 aaaaaTTCGTTCCCTTCCACTCCACCAGttttcacctctcttcttcaatctctcatcgtc 134
|||| ||| |||| || |||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 114 AAAATTTCCTTCCATTTCACTCCACGAGTTTTCACCTCTCTTGTTCAATCTCTCAACGTC 173
Query 135 tcttcctcgtttctcgttttcgctttttcccc-tttcctcttcgATTTTACTGGAATCCG 193
||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 174 TCTCCCTCGTTTCTCGTTTTCGCTTTTTCCCCTTTTCCTCTTCTATTTTACCGGAATCCG 233
Query 194 AGAATTTTTGATCAGATCTAGTTTCAGAAATAGGTTAGATGCTTAC--TGATCGA-GG-- 248
|||||||||||||||||||||||||||||||||||||| | | || || | || ||
Sbjct 234 AGAATTTTTGATCAGATCTAGTTTCAGAAATAGGTTAG-TTCCAACAATG-TTGACGGAA 291
Query 249 -GA-GAA-G-G-ATTTCTGGTTGCAATGTGAGTTTTGAA-TT--CCGT-GGTGATT--AT 297
|| ||| | | |||||||||| ||||| |||||| ||| || | | | ||| |
Sbjct 292 CGAGGAAGGCGAATTTCTGGTTTCAATGGGAGTTTCGAATTTAGCAATAGAAAATTCCGT 351
Query 298 GGTTACGGATTCGTAGATCGATCTCAAGGTTGCCATGAAAGGAGTCCTTCAAGATCATTG 357
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 352 GGTTATGGATTCGTAGATCGATCTCAAGGTTTCCATGAAAGGAGTCCTTCAAGATCA-TG 410
Query 358 -TCTGTTTCGAAAATCCTTCGTATCACATCACCGACCTTGTCTCCACCGTCGTCGACTTC 416
|||||||||||||||||||||||||| |||| |||| |||||||||||| ||| ||||
Sbjct 411 TTCTGTTTCGAAAATCCTTCGTATCACGCCACCAACCTCGTCTCCACCGTCTTCGGCTTC 470
Query 417 TACCGGCGCTGGTTATATCGAACACCGGGTTTCCAAGTTCGATACTCTCGCCGGCATTGC 476
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 471 TACATGCGCTGGTTATATCGAACACCGGGTCTCCAAGTTCGATACTCTCGCCGGCATTGC 530
Query 477 CATAAAGTATGGCGTGGAGGTTGCAGATATCACGAAGCTGAATGGGCTTGTTACTGATCT 536
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 531 CATTAAGTATGGCGTTGAGGTTGCAGATATCACGAAGCTGAATGGGCTTGTAACTGATCT 590
Query 537 TCAGATGTTTGCTCTTAAGTCTCTCCGGATACCATTACGTGGAAGACATCCTCCTTCTCC 596
|||||||||||||||| |||||||||| |||||||||| |||||||||||||||||| ||
Sbjct 591 TCAGATGTTTGCTCTTGAGTCTCTCCGAATACCATTACCTGGAAGACATCCTCCTTCCCC 650
Query 597 TTGCTTATCTAACGGCTCCCTAAATCATGGAGAGGATTGTTCCGAGCAAGCTTCATCATC 656
||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 651 ATGCTTATCTAATGGCTCTCTAAATCATGGAGAGGATTGGTCCGAGCAAGCTTCATCCTC 710
Query 657 GGCAAGCAATGGCAACCACCAAGACGTATTTGACTCCTTTCAGTCTTTGAGGCTGAAGCC 716
|| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||
Sbjct 711 AGCTAGCAATGGCAACCACCAGGACGTATTTGACTCCTTCCAGTCTTTGAGGTTGAA-CC 769
Query 717 -TCCAGAAAAGAAGATTTCTCCAGCCATGAACTCCTTGCAAGGTTATTATGGACTGAAAC 775
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ATTCAGAAAAGAAGATTTCTCCAGCCATGAACTCCTTGCAAGGTTATTATGGACTGAAAC 829
Query 776 CAAAAACCAGAAGAGCTTCCGAAAGTTTTGAGATGGCAGTCTGCAAGAACAAAGCTTCTC 835
|||||| |||||||||||| ||| |||||| ||||||||||| ||||||| |||||||||
Sbjct 830 CAAAAAACAGAAGAGCTTCTGAAGGTTTTGGGATGGCAGTCTACAAGAACGAAGCTTCTC 889
Query 836 ATCTCCAACACGATGGTCAGTACCTCACTCCCTTCCCAGCCACCAATACTCCCTTAAGCC 895
| |||||| || ||| |||||| |||||||||||||| ||||||| |||||||||| ||
Sbjct 890 AACTCCAAGACAATGATCAGTATCTCACTCCCTTCCCCGCCACCAGTACTCCCTTATCCC 949
Query 896 ACCACAGAAAATCAAGAAGTTTGGTCGATGCAGTTGTCGCTGAGGTCAACCAATCACCCA 955
||||||||||||||||||| ||||| ||||||||| |||| ||||| |||||||||||||
Sbjct 950 ACCACAGAAAATCAAGAAGCTTGGTAGATGCAGTTATCGCCGAGGTTAACCAATCACCCA 1009
Query 956 ACCCTTCAAAAGCAGGAGGAGGAGAAGTGAA-T-T-CTGACAAGCCAATGAGAAGACGCC 1012
||||||||||||||||||||||||||||||| | | |||| |||||||||||||||||||
Sbjct 1010 ACCCTTCAAAAGCAGGAGGAGGAGAAGTGAACTCTACTGATAAGCCAATGAGAAGACGCC 1069
Query 1013 AAAAATCTGAAACCGATTTTAGTTCACGAGCTCCAGAATTGCTGTTGAAGGAAGAGAACA 1072
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AAAAATCTGAAGCCGATTTTAGTTCACGAGCTCCAGAATTGCTGTTGAAGGAAGAGAACA 1129
Query 1073 GAAGCAGCAATGGCGCGTTTTCTGCAATAGCTGGGAAAAATTTAGCACTGAGATCCAAAG 1132
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1130 GAAGCAGCAGTGGCGCGTTTTCTGCAATAGCTGGAAAAAATTTAGCACTGAGATCCAAAG 1189
Query 1133 CAGCAGGCAGAGCTAATGTT-TCAACAGATACTGAGAATGGTAATGTCAATTCCATACCA 1191
|| || |||||||||| || ||| |||| || ||| | | ||||||||||||||
Sbjct 1190 CATCAAGCAGAGCTAAC-TTATCAGCAGAAACC-AGAC----A-TCTCAATTCCATACCA 1242
Query 1192 ATCAGTTTGATGGATGCTCCTGTGGGAGTGGGAGACAGCTTCTCAAGCGTGAGGAAATC- 1250
|||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1243 ATCAATTTGATGGATGCTCCTGTGGGAG----A--CAGCTTCTCAAGCGTGAGGAAATCT 1296
Query 1251 GTTTAGCGCATCTAGTCTGCAAGAATCGGATTGTACCAGCAACGGTTCATCGCTATGGTC 1310
||| |||||||||||||| |||||| | | |||| |||||||||||||||||||||| |
Sbjct 1297 GTT-AGCGCATCTAGTCTACAAGAACCAAACTGTAACAGCAACGGTTCATCGCTATGGCC 1355
Query 1311 AACCTCGAAGTGGACCCTGAAACCTGATTTGCTCACACAGGCAGCCATGGCGAGTTCTAT 1370
|||||| |||||||||||||||||||| || |||||||| | ||||||||| ||||||||
Sbjct 1356 AACCTCAAAGTGGACCCTGAAACCTGAGTTACTCACACAAGTAGCCATGGCTAGTTCTAT 1415
Query 1371 TTTTGACGGATTGCCTAAGCCTTTAACAGGTCGGAGAAACAAAAAAGCTGTGGACTAAGG 1430
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1416 TTTTGACGGATTGCCTAAGCCATTAACTGGTCGGAGAAACAAAAAGGCTGTGGACTAAGG 1475
Query 1431 --ACTAAGGT--T-AG-TTA-G--G-TCT--TT-T-G---GT----TTTTG-T------A 1462
| | |||| | || || | | ||| || | | || ||||| | |
Sbjct 1476 TTAGTTAGGTACTTAGGTTCCGTCGGTCTCGTTATCGACTGTCCACTTTTGGTTTTTGTA 1535
Query 1463 ATCCATAAGCAAGAACTCGATGGCT---AT--TAGATTGGGGAGTAAATAGAA-GTAAAA 1516
||||| ||||||||| || |||||| || ||||||| ||||||||||||| ||||||
Sbjct 1536 ATCCAAAAGCAAGAAGTCAATGGCTTTTATAATAGATTGAGGAGTAAATAGAAAGTAAAA 1595
Query 1517 AGTGTATTATTGCATTTCATTTATTAAAAACAATAAGTCAAAA 1559
|||||||| ||||||||||| ||| ||||||||||| |||||
Sbjct 1596 AGTGTATTGCTGCATTTCATTCATTCAAAACAATAAGGCAAAA 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79216460010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5