BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489172
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1254 0.0
> AT5G23160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G08240.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:7795256-7796346 REVERSE LENGTH=1005
Length=1005
Score = 1254 bits (679), Expect = 0.0
Identities = 903/1008 (90%), Gaps = 27/1008 (3%)
Strand=Plus/Plus
Query 1 ACATTTCTGGATACTTGTTCTCAACTTTTAATGGGCAAGCCGGAGAGGAAAGTCCGAGAG 60
|||||| ||||||||| || ||| ||| |||||||||| |||||||| ||||||||||||
Sbjct 7 ACATTTTTGGATACTTCTTTTCATCTTATAATGGGCAAACCGGAGAGAAAAGTCCGAGAG 66
Query 61 AGAATAAACTCTTCGTCTTCTTATTTTCTTCGCTGTTTCGGGGTTTCTCGGAAAATTCAC 120
||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 67 AGAATTAACTCTTCATCTTCTTATTTTCTTCGATGTTTCGGGGTTTCCCGGAAAATTCAC 126
Query 121 TCAGACAAACCAATAGTAGATGCTGGTCAAGAGA-CGCAGAAGACGAAGAAGAAGATGAG 179
|| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |||
Sbjct 127 TCGGACAAACCAATAGTAGACGCTGGTCAAGAGATC-CAGAAGACGAAGAAGAAGACGAG 185
Query 180 AACTCGTTGGTTTTCACGGCCAACAAAATTTCGTTTGAAGAACGGTGATATCACACCGGC 239
|||||||||||||||||||||||||||||| |||| ||| | | || |||||| | |
Sbjct 186 AACTCGTTGGTTTTCACGGCCAACAAAATTCCGTTCCAAGGA--G-GAGATCACA-C--C 239
Query 240 GACGTCGATTCACGAGAT-GGAGTGTCAAAACTCGACTGTTGAAGATGACAAGCAAAATC 298
|||||||||| || || | |||| ||||| | |||| |||||||||| ||||||||||
Sbjct 240 GACGTCGATTTACAAG-TCGGAGAAACAAAAGTTGACTTTTGAAGATGATAAGCAAAATC 298
Query 299 TGTTTCGGGTGATACGTCATGT-ACCCGATCGGAAAAATGTTGCGACTAGTGGTTATAAG 357
|||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||
Sbjct 299 TGTTTCGGGTGATACGTCATGTGA-CCGATCGAAAAAATGTTGCGACAAGTGGTTATAAG 357
Query 358 GCCGTTGATCATGAAAGTAACGAGAAAGACACGACCGAACGAAGAGACATAAATCCGGAT 417
||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 358 ACCGTTGATCATGAAACTAAAGAGAAAGACACGAACGAACAAAGAGACATAAATCCGGAG 417
Query 418 CCATTGAGTTTCTTAGGGTATGATGACACGTTTTACGAACGGGTATCAACAGACGGGAAA 477
|| |||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||
Sbjct 418 CCGTTGAGTTTCTTAGGATACGATGACAAGTTTTACGAACGGGTATCAACAGACGGAAAA 477
Query 478 CTTGACCCGACTAATATCGTCGGGTCCGGATCCAAGCCGAAGGAAATAAGGGAGAAGTCG 537
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 478 CTTGACCCGACTAATATCGTCGGGTCGGGGTCCAAGCCGAAGGAAATAAGGGAGAAGTCG 537
Query 538 TCAAGGGTCAGAAAAGGGTCCCGGGTGGCTAAGCTTGACCCGGTGATTGGGATATCAATC 597
|||||||| |||||| |||| ||||| |||| ||||||||||| |||||||||||||||
Sbjct 538 TCAAGGGTTAGAAAACGGTCGCGGGTCTCTAAACTTGACCCGGTAATTGGGATATCAATC 597
Query 598 ATAATGTTAACGCTAATGATAATGTTGACGTGGGGACGTTTGTGTGCGATACTTTGTACA 657
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 ATAATGCTAACGCTGATGATAATGTTGACGTGGGGACGTTTGTGCGCGATACTTTGTACA 657
Query 658 TCTACTTGGTGCTACATTCTCCCTCGTCTCAAAGAAGCTGCCACTGCGGTTGCGGTGGCC 717
|| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
Sbjct 658 TCCACTTGGTGCTACATTTTCCCTCGTCTCAAAGAAGCTGCTACTGCGGTTGCGGTGGTC 717
Query 718 AAACGCAAACGCAATGGTAGCGGTAAAGGTGAAGAGGGGTCGTTTCAAGGTGATCTGGAT 777
|| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 718 AACCGCAAACGCAGTGGTAGCGGTAAAGGTGAAGAAGGGTCGTTTCAAGGTGATTTGGAT 777
Query 778 TTGAACTCTGAGGCTTATAAGAAAAAAGTCGTTTTGGAAGGATTTCTTGTTCGGCAACAC 837
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTGAACTCTGTGGCTTATAAGAAAAAAGTCGTTTTGGAAGGATTTCTTGTTCGGCAACAC 837
Query 838 CGCGTTTCGCTGTGACAACGTTTCAATTCT-TTTC--------CTCAAATTTTAAAGGTG 888
| |||||| |||||||||||||||||||| ||| ||||||| || | ||||
Sbjct 838 AGAGTTTCGATGTGACAACGTTTCAATTCTCTTTATTTATTTTCTCAAATCTTGATGGTG 897
Query 889 TAAATTTCTGTTTATTTGTTGATTTT-GTCTGGTCGTATCTTCCA-T-TT-TTGTTGACA 944
||| |||||| | | ||||||||||| || |||||||||||||| | || || ||||||
Sbjct 898 TAATTTTCTGATGAGTTGTTGATTTTTGTTTGGTCGTATCTTCCTCTCTTCTT-TTGACA 956
Query 945 TTGTGAAAATGTGTATGAAAACTATAAA-TACTAATCACGATTGCTAT 991
| | ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 957 TGGCGAATATGTGTATGAAAACTATAAAATACTAATCACGATTGCTAT 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5