BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489173
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23170.1 | Symbols: | Protein kinase superfamily protein | ... 1620 0.0
> AT5G23170.1 | Symbols: | Protein kinase superfamily protein
| chr5:7798197-7799448 REVERSE LENGTH=1252
Length=1252
Score = 1620 bits (877), Expect = 0.0
Identities = 1136/1254 (91%), Gaps = 46/1254 (4%)
Strand=Plus/Plus
Query 1 GCAAATTTACCGATGAAGGAGTTCGATTATGACAAGCTTTTCACTGTCACAGATCGATTC 60
||||| ||||||||||||||||||||||| ||||||||| |||||| || ||||||||||
Sbjct 1 GCAAACTTACCGATGAAGGAGTTCGATTACGACAAGCTTGTCACTGCCATAGATCGATTC 60
Query 61 TCTCATTCAAAACTCATCGGTAAAGGAAGCCATGGCTATGTTTATAAAGCCCTTCTTCAT 120
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCCTTCGAAACTCATCGGTAAAGGAAGCCATGGCTATGTTTATAAAGCCCTTCTTCAT 120
Query 121 CACCATA-ACCACGACGACAA-ACATCAAAGAGTCGTAGCCATTAAAGCACcatcatcat 178
||||| | || ||||| || || |||||||||||||||||||||| ||||||||||||
Sbjct 121 CACCA-AGACGTTGACGA-AACACGTCAAAGAGTCGTAGCCATTAAAACACCATCATCAT 178
Query 179 ta--t-cattatc-tc--cctcatcatcatcatccaaatcaGAACAAACGAAGAAACTAG 232
|| | | | ||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 TATCTCCCTCATCACCATCCTCATCATCATCATCAAAATCAGAACAAACGAAGAAACTAG 238
Query 233 AAAACGAGATCAATGTAATGTCATCGTTACCATATCACCCACACGTTTTGAGCTTTTTAG 292
||||||||||| | || |||||||||||||| |||||||||||||| || |||||| | |
Sbjct 239 AAAACGAGATCGACGTTATGTCATCGTTACCTTATCACCCACACGTGTTAAGCTTTCTCG 298
Query 293 GTCATGCCGAGAAAAAACTCATGGTCGTTGAGTTCATGCCAAACGGATCGTTACACCAGT 352
| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
Sbjct 299 GCCATGCCGAGAAAAAACTCATGGTCGTTGAGTACATGCCAAACGAATCGTTATACCAAT 358
Query 353 TATTACACGTGTCAGCTGATCCTCTTCCCACTTGGCTTAAACGCATTGAAATCGCTCTTC 412
|||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 359 TATTACACGTGTCAACTGATCCTCTTCCCACGTGGCTTAAACGCATCGAAATCGCTCTTC 418
Query 413 AGATCGCGAGTGCGGTTCACTTCCTCCATGAACAAGGTATCATCCACCGTGATATCAAAT 472
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 419 AGATCGCGAGTGCGGTTCACTTCCTCCATGAACACGGTATCATCCACCGCGATATCAAAT 478
Query 473 CGGAAAACGTTTTGTTTGATTCGAATTGGGAAGCGAAGCTTGCTGACTTCGGACTCGCCG 532
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGGAAAATATTTTGTTTGATTCGAATTGGGAAGCGAAGCTTGCTGACTTCGGACTCGCCG 538
Query 533 TTGATTTTGGACGTG---AGAAGACGAGACCAGCGCCGGCGGGAACTATTGGATACTTAG 589
||||||||||| ||| |||||| ||||| || |||||||||||||||||||||||||
Sbjct 539 TTGATTTTGGAGGTGATAAGAAGATAAGACCGGCTCCGGCGGGAACTATTGGATACTTAG 598
Query 590 ATCCGTGTTATACTTTACCGGAGAATCTGAGTATGAAGACTGATGTTTATAGTTACGGTG 649
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATCCGTGTTACACGTTACCGGAGAATCTGAGTATGAAGACTGATGTTTATAGTTACGGTG 658
Query 650 TTGTTTTGTTGGAGATTGTTAGCTGTAGGAAAGCTATCGAGGTCTCTCGTTCGCCGTCTT 709
| |||||||||||||||||||| ||||| |||||||| || ||||||||||||||| | |
Sbjct 659 TCGTTTTGTTGGAGATTGTTAGTTGTAGAAAAGCTATTGACGTCTCTCGTTCGCCGGCGT 718
Query 710 CGATAGTGGACTGGGCGGTTCCGTTGATTAAAGAAGGGAGGATCGGAGAAATCTGCGGCG 769
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 719 CGATAGTAGACTGGGCGGTTCCGTTGATTAAGGAAGGGAGGATCGGAGAAATATGCGGCG 778
Query 770 GAGGAGGAGGAGGATCGGCTGTTTTCCGGGGAATGAATTTACGGTTGTTAAGTATGGCGG 829
|||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||
Sbjct 779 GAGGAGGAGGAGGATCGGGTGTTTTCCGGGGAATGAGTCTACGGTTGTTGCGTATGGCGG 838
Query 830 CGAGATGCGTTTCTTCCGACGTGGAATCACGTCCGTGTTTCGGGGAGATCACGGCGGAGA 889
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 CGAGATGCGTTTCATCTGACGTGGAATCACGACCGTGTTTCGGGGAGATCACGGCGGAGA 898
Query 890 TAGTGGCGTGTTTGGCGGAACCGTTGAAGAGTTTGCCGTTATGGATTAGCGTTTTGCGTC 949
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 TAGTGGCGTGTTTGGCGGAACCGTTGAAGAGTTTGCCGTTATGGATGAGCGTTTTGCGTC 958
Query 950 GGGTTGTTAAACTGAAACGGCGGAAAAAACGGTTGAGAGAAACGCTGACGTGGCCGGGTC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGGTTGTTAAACTGAAACGGCGGAAAAAACGGTTGAGAGAAACGCTGACGTGGCCGGGTC 1018
Query 1010 AAACTTGCCGCGTTTGGTGAGAGTTAATGAA--GCCGGGTCAAATGTCGAATCGGGTCGG 1067
||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||
Sbjct 1019 AAACTTGCCGCGTTTGGTGAGAGTTTATGAATTGC-GGGTCAAATATCGAATCGGGTCGG 1077
Query 1068 GTTGGAAAGGATGG-TT----ACAAAAA-ACAA-A-C-ATCCAAATCCAAGCAGAAGAAC 1118
||| ||||| ||| || ||||||| | || | | ||| ||||||||||||||||||
Sbjct 1078 GTTA-AAAGGTTGGGTTGGTTACAAAAAGAAAACAACCATCTAAATCCAAGCAGAAGAAC 1136
Query 1119 ACTCGCGAAA-A-A--GA-AT-------G-----A-TA--TAGCATTTAATTTTGTTATC 1158
| |||| ||| | | || || | | || ||||||||||||||||||||
Sbjct 1137 AATCGCTAAACAGAATGATATATTTATCGTTTGTAGTAAGTAGCATTTAATTTTGTTATC 1196
Query 1159 CCTTCGGATAATGTAACCATTAATCCATTATTAATTCAGTCGTGATCGATTGAT 1212
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1197 CCTTCGGATAATGTAACCATTAATCCATTACTAATTCAGTCGTGGTCGATTGAT 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5