BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489173 Length=1212 Score E Sequences producing significant alignments: (Bits) Value AT5G23170.1 | Symbols: | Protein kinase superfamily protein | ... 1620 0.0 > AT5G23170.1 | Symbols: | Protein kinase superfamily protein | chr5:7798197-7799448 REVERSE LENGTH=1252 Length=1252 Score = 1620 bits (877), Expect = 0.0 Identities = 1136/1254 (91%), Gaps = 46/1254 (4%) Strand=Plus/Plus Query 1 GCAAATTTACCGATGAAGGAGTTCGATTATGACAAGCTTTTCACTGTCACAGATCGATTC 60 ||||| ||||||||||||||||||||||| ||||||||| |||||| || |||||||||| Sbjct 1 GCAAACTTACCGATGAAGGAGTTCGATTACGACAAGCTTGTCACTGCCATAGATCGATTC 60 Query 61 TCTCATTCAAAACTCATCGGTAAAGGAAGCCATGGCTATGTTTATAAAGCCCTTCTTCAT 120 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTCCTTCGAAACTCATCGGTAAAGGAAGCCATGGCTATGTTTATAAAGCCCTTCTTCAT 120 Query 121 CACCATA-ACCACGACGACAA-ACATCAAAGAGTCGTAGCCATTAAAGCACcatcatcat 178 ||||| | || ||||| || || |||||||||||||||||||||| |||||||||||| Sbjct 121 CACCA-AGACGTTGACGA-AACACGTCAAAGAGTCGTAGCCATTAAAACACCATCATCAT 178 Query 179 ta--t-cattatc-tc--cctcatcatcatcatccaaatcaGAACAAACGAAGAAACTAG 232 || | | | ||| | |||||||||||||||| ||||||||||||||||||||||||| Sbjct 179 TATCTCCCTCATCACCATCCTCATCATCATCATCAAAATCAGAACAAACGAAGAAACTAG 238 Query 233 AAAACGAGATCAATGTAATGTCATCGTTACCATATCACCCACACGTTTTGAGCTTTTTAG 292 ||||||||||| | || |||||||||||||| |||||||||||||| || |||||| | | Sbjct 239 AAAACGAGATCGACGTTATGTCATCGTTACCTTATCACCCACACGTGTTAAGCTTTCTCG 298 Query 293 GTCATGCCGAGAAAAAACTCATGGTCGTTGAGTTCATGCCAAACGGATCGTTACACCAGT 352 | ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| | Sbjct 299 GCCATGCCGAGAAAAAACTCATGGTCGTTGAGTACATGCCAAACGAATCGTTATACCAAT 358 Query 353 TATTACACGTGTCAGCTGATCCTCTTCCCACTTGGCTTAAACGCATTGAAATCGCTCTTC 412 |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 359 TATTACACGTGTCAACTGATCCTCTTCCCACGTGGCTTAAACGCATCGAAATCGCTCTTC 418 Query 413 AGATCGCGAGTGCGGTTCACTTCCTCCATGAACAAGGTATCATCCACCGTGATATCAAAT 472 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 419 AGATCGCGAGTGCGGTTCACTTCCTCCATGAACACGGTATCATCCACCGCGATATCAAAT 478 Query 473 CGGAAAACGTTTTGTTTGATTCGAATTGGGAAGCGAAGCTTGCTGACTTCGGACTCGCCG 532 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CGGAAAATATTTTGTTTGATTCGAATTGGGAAGCGAAGCTTGCTGACTTCGGACTCGCCG 538 Query 533 TTGATTTTGGACGTG---AGAAGACGAGACCAGCGCCGGCGGGAACTATTGGATACTTAG 589 ||||||||||| ||| |||||| ||||| || ||||||||||||||||||||||||| Sbjct 539 TTGATTTTGGAGGTGATAAGAAGATAAGACCGGCTCCGGCGGGAACTATTGGATACTTAG 598 Query 590 ATCCGTGTTATACTTTACCGGAGAATCTGAGTATGAAGACTGATGTTTATAGTTACGGTG 649 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 ATCCGTGTTACACGTTACCGGAGAATCTGAGTATGAAGACTGATGTTTATAGTTACGGTG 658 Query 650 TTGTTTTGTTGGAGATTGTTAGCTGTAGGAAAGCTATCGAGGTCTCTCGTTCGCCGTCTT 709 | |||||||||||||||||||| ||||| |||||||| || ||||||||||||||| | | Sbjct 659 TCGTTTTGTTGGAGATTGTTAGTTGTAGAAAAGCTATTGACGTCTCTCGTTCGCCGGCGT 718 Query 710 CGATAGTGGACTGGGCGGTTCCGTTGATTAAAGAAGGGAGGATCGGAGAAATCTGCGGCG 769 ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 719 CGATAGTAGACTGGGCGGTTCCGTTGATTAAGGAAGGGAGGATCGGAGAAATATGCGGCG 778 Query 770 GAGGAGGAGGAGGATCGGCTGTTTTCCGGGGAATGAATTTACGGTTGTTAAGTATGGCGG 829 |||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||| Sbjct 779 GAGGAGGAGGAGGATCGGGTGTTTTCCGGGGAATGAGTCTACGGTTGTTGCGTATGGCGG 838 Query 830 CGAGATGCGTTTCTTCCGACGTGGAATCACGTCCGTGTTTCGGGGAGATCACGGCGGAGA 889 ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 839 CGAGATGCGTTTCATCTGACGTGGAATCACGACCGTGTTTCGGGGAGATCACGGCGGAGA 898 Query 890 TAGTGGCGTGTTTGGCGGAACCGTTGAAGAGTTTGCCGTTATGGATTAGCGTTTTGCGTC 949 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 899 TAGTGGCGTGTTTGGCGGAACCGTTGAAGAGTTTGCCGTTATGGATGAGCGTTTTGCGTC 958 Query 950 GGGTTGTTAAACTGAAACGGCGGAAAAAACGGTTGAGAGAAACGCTGACGTGGCCGGGTC 1009 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 GGGTTGTTAAACTGAAACGGCGGAAAAAACGGTTGAGAGAAACGCTGACGTGGCCGGGTC 1018 Query 1010 AAACTTGCCGCGTTTGGTGAGAGTTAATGAA--GCCGGGTCAAATGTCGAATCGGGTCGG 1067 ||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||| Sbjct 1019 AAACTTGCCGCGTTTGGTGAGAGTTTATGAATTGC-GGGTCAAATATCGAATCGGGTCGG 1077 Query 1068 GTTGGAAAGGATGG-TT----ACAAAAA-ACAA-A-C-ATCCAAATCCAAGCAGAAGAAC 1118 ||| ||||| ||| || ||||||| | || | | ||| |||||||||||||||||| Sbjct 1078 GTTA-AAAGGTTGGGTTGGTTACAAAAAGAAAACAACCATCTAAATCCAAGCAGAAGAAC 1136 Query 1119 ACTCGCGAAA-A-A--GA-AT-------G-----A-TA--TAGCATTTAATTTTGTTATC 1158 | |||| ||| | | || || | | || |||||||||||||||||||| Sbjct 1137 AATCGCTAAACAGAATGATATATTTATCGTTTGTAGTAAGTAGCATTTAATTTTGTTATC 1196 Query 1159 CCTTCGGATAATGTAACCATTAATCCATTATTAATTCAGTCGTGATCGATTGAT 1212 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1197 CCTTCGGATAATGTAACCATTAATCCATTACTAATTCAGTCGTGGTCGATTGAT 1250 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59537846370 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5