BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489175
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2104 0.0
> AT5G23200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G08270.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7807183-7809164 FORWARD LENGTH=1512
Length=1512
Score = 2104 bits (1139), Expect = 0.0
Identities = 1363/1465 (93%), Gaps = 39/1465 (3%)
Strand=Plus/Plus
Query 33 GATTCCTGATGTTCTACAGTAATTTCTTGCAATCCTTGT-AACAAAGAGGGTGGAGAATC 91
||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 53 GATTCCTGATGTTCTTCAGTAATTTCTTGCAATCCTTATAAACAAAGAGCGTGGAGAATC 112
Query 92 GTTTCTA-AGGAAAGAAAACTAAAAATGGCGACTCTTTTCAACAAATTTCAGCAGGCTGT 150
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 GTTTC-AGAGGAAAGAAAACTAAAAATGGCGACTCTTTTCAACAAATTTCAGCAGGCTGT 171
Query 151 TGGAGTTCTTGCCAAGAGTACCACATTTGCTAAGAACCCAAGGCAACTCCAATTTGAAGC 210
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 172 TGGAGTTCTTGCCAAGAGTACCACATTTGCTAAGAACCCAAGGCAACTGCAGTTTGAAGC 231
Query 211 AGACGTTAACAAACTGTTTATGTATACCAGCTATAATCGGTTGGGACGAGAAGCTGAGGA 270
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 232 AGACGTTAACAAACTCTTTATGTATACAAGCTATAACCGGTTGGGACGAGAAGCTGAGGA 291
Query 271 GACGGATGCAGAGGAGATCATTGAGATGGCTGGTAAAGCCACTTTATCTGAGCAGCAGAA 330
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GACTGATGCAGAGGAGATCATTGAGATGGCTGGTAAAGCCACTTTATCTGAGCAGCAGAA 351
Query 331 GCAAGTTCAAGAGAACATTCACTACCAAGTTGAAAACTTCTGCTCTTTGATGGATGGAAT 390
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 352 GCAAGTTCAAGAGAACATTCACTACCAAGTTGAAAAATTCTGCTCTTTGATGGATGGAAT 411
Query 391 CCTTCTTCCTGATGTTAGGAAGAACGAGTCGGGTTCACAATCAACAAGCCCTC--C-TCC 447
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |||
Sbjct 412 CCTTCTTCCTGATGTTAGGAGGAACGAGTCGGGGTCACAATCAACAAGCCCTCGTCCTCC 471
Query 448 TCGTAGAAGTGGTCTTACTTTCGCCATTGGTAGTAATAATGCTTTTCCAGC-TGTAGAT- 505
||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 472 TCGTAGAAGTGGTCTTACTTTCGCCATTGGTAGTAATAATGCTTTTCCA-CATGCAGATC 530
Query 506 ACGCCCCTTGTTCCGGAGACAAAGCCTTTGAAACTCAATGAGGTCTCACAGAGATTAATG 565
| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 531 A-GCCCCTTGTTCCCGAGACAAAGCCTTTGAAACTCAATGACGTCTCACAGAGATTAATG 589
Query 566 GATCAAATGGGCTATACCCTCGAGATCAAACCATCTGTAATACCTCACAAAGACGCTGGT 625
||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 590 GATCAAATGGGTTACACCCTCGAGACCAAACCGTCTGTAATACCTCACAAAGACGCTGGT 649
Query 626 CAAGGTTGTTTCATCAAAGGCGTAG-CAGATGTTGGAACCGTCTTAGCCTTTTACCCTGG 684
||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 650 CAAGGTTGTTTTATCAAAGGCG-AGGCAGATGTTGGAACCGTCTTAGCCTTTTACCCTGG 708
Query 685 AGTAATTTACTCTCCTGCTTTCTACAGGTACATTCCCGGGTACCCGAAGGTTGATTCACA 744
||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 709 AGTTATTTACTCTCCTGCTTTCTACAAGTACATACCCGGGTACCCGAAGGTTGATTCACA 768
Query 745 GAACTCGTACCTCATCACGAGGTATGATGGAACTGTGATAAACGCTCAGCCTTGGGGTCT 804
|||||| || |||||||| ||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 769 GAACTCATATCTCATCACCAGGTATGATGGGACTGTAATAAATGCTCAACCTTGGGGTCT 828
Query 805 TGGGGGAGAATCTAGGGAAGTATGGAATGGGTCCTACACACCTGCGG-CTAAAGCAAACA 863
|||||||||||| ||||||| |||||| ||||||||||||||||||| | ||||||||||
Sbjct 829 TGGGGGAGAATCAAGGGAAGCATGGAACGGGTCCTACACACCTGCGGTC-AAAGCAAACA 887
Query 864 CCAAGGCCGCAGAAAACGGGTCAGACAGGTTATGGAAAGCATTGAGCAAGCCTCTCGAAG 923
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 888 CCAAAACCGCAGAAAACGGGTCAGACAGGTTATGGAAAGCGTTGAGCAAGCCTCTCGAAG 947
Query 924 GTTCAGGTAAAGCAAAAGACGTTCTTGAGAGGAGAAATCCGTTGGCATTTGGTCACTTAG 983
|||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 948 GTTCGGGTAAAGGAAAAGAGGTTCTTGAGAGGAGAAATCCGTTGGCTTTTGGTCACTTAG 1007
Query 984 CTAACCACCCGGCAAAAGAAATGACTCCAAACGTTATGATATGTCCCTATGACTTCCCCT 1043
|||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 1008 CTAACCACCCAGCGAAAGAGATGACTCCAAACGTTATGATATGTCCTTATGACTTCCCTT 1067
Query 1044 TGATGGCGAAAGATCTGCGACCTTACATCCCGAATATATCTTTTGGGGATTCTGGAGAAA 1103
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1068 TGATGGCGAAAGATCTGCGGCCTTACATTCCGAATATATCTTTTGGGGATTCTGGAGAAA 1127
Query 1104 TAAAGATGAAGAGATTTGGAAGCTTCTGGTTTAAGACAGGGAGTAAAAACGGGTTAGAAG 1163
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1128 TAAAGATGAAAAGATTTGGAAGTTTCTGGTTTAAGACAGGGAGTAAAAACGGGTTAGAAG 1187
Query 1164 CTCCGGTTCTGAAGACACTGGTCTTGGTGGCAACGAGGTCGTTGTGTAATGAGGAA-TTA 1222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1188 CTCCGGTTCTGAAGACACTGGTCTTGGTGGCAACGAGGTCGTTGTGTAATGAGGAACTT- 1246
Query 1223 TTGCTGAATTACAGGCTGAGCAACTCTAAGAGACGACCAGATTGGTATACTCCGGTTAAC 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TTGCTGAATTACAGGCTGAGCAACTCTAAGAGACGACCAGATTGGTATACTCCGGTTAAC 1306
Query 1283 GAAGAGGAGGATCGAAGAAGATGGAGCTAAACTTCTCTTTTATTATTTTCTTGAAACTTG 1342
|| ||||| ||| | |||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 1307 GAGGAGGAAGATAGGAGAAGATGGAGCTAAATTTCTCTTTTATG-TTTTAATGAAACTTG 1365
Query 1343 AAAGGCTCTGTTTCAAAACATGCTCCTCGGGTTTCTTTGGACTAT-AGCAGTGCGACGTC 1401
|||||||||||||||||||||||||||||| ||||||| |||||| ||| | | ||||||
Sbjct 1366 AAAGGCTCTGTTTCAAAACATGCTCCTCGGTTTTCTTTAGACTATTAGC-G-G-GACGTC 1422
Query 1402 GTTTCG-T--TT-TG-----------GTTTTT-GATTATTCTTGGAAGACAtttt-tt-t 1443
|||||| | || || |||||| ||||||| |||||||||||||| || |
Sbjct 1423 GTTTCGCTGATTGTGTCACTATTTTTGTTTTTCGATTATTTTTGGAAGACATTTTATTCT 1482
Query 1444 AGTCTTTTATGGTGTTCTGTTGTTA 1468
| | ||||||| |||||||||||||
Sbjct 1483 AATATTTTATGTTGTTCTGTTGTTA 1507
Score = 69.4 bits (37), Expect = 9e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 AGATGCAGTCTTCTTCATCAATGGAGGTTTTTGATTC 37
|||||||||||||||||||||||||||||||||||||
Sbjct 1 AGATGCAGTCTTCTTCATCAATGGAGGTTTTTGATTC 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72389185890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5