BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489182
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23240.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 2161 0.0
AT5G23235.1 | Symbols: | pseudogene, antisense mRNA to genes A... 941 0.0
> AT5G23240.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr5:7826732-7828724 REVERSE LENGTH=1713
Length=1713
Score = 2161 bits (1170), Expect = 0.0
Identities = 1430/1552 (92%), Gaps = 31/1552 (2%)
Strand=Plus/Plus
Query 28 TATAACTCAATTTGGAACTTTCTTTGTCCGTCCCAAATTAAATATCTTTCCAAGAGAGAT 87
||||||||||||||||||||| | | | |||||||||| |||||||||||||||||||||
Sbjct 49 TATAACTCAATTTGGAACTTT-TAT-T-CGTCCCAAATAAAATATCTTTCCAAGAGAGAT 105
Query 88 GGAAAAATAGCTTCCTACAGAGATAtttt-------tggt-tttttCAACAACTTGTTCC 139
|||||||||||||| || ||||||||||| | || | || | ||| | |||
Sbjct 106 GGAAAAATAGCTTCATATAGAGATATTTTCAACAACTTGTCCCTCTCTA-AAC-TCATCC 163
Query 140 -TC-T-C-TAACAGAGAAAGGGAAAAAATGTCACCGGCTATTTTTACTCCGACGACTCTT 195
| | | ||||||||| ||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 164 ACCTTCCAAAACAGAGAAGGGGAAAATATGACACCGGCTATTTTTTCTCCGACGACTCTT 223
Query 196 CCTCCGTCAACTGCTACTACATGGCCATGTACCACATCTCAGAAGCTCATCACCATTAGA 255
||||| ||||||| |||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 224 CCTCCATCAACTG---CTACATGGCCATGTTCAACATCTCAGAAGCTCATCACCGTTAGA 280
Query 256 TCACCACTCAAGCTCAAGTGTAGAGCCACTTCTTCTACATCATCTTCATCTATCACAGAC 315
|||||||||||| |||||||||||| || | | | ||||||| || |||||||| |||
Sbjct 281 TCACCACTCAAGTTCAAGTGTAGAG-CA--AC-T-T-CATCATCATCGTCTATCACTGAC 334
Query 316 TTTGATCTCTACGACCTCTTGGGTGTTGATCGGAGCTCTGATAAGTCTCAGATCAAATCA 375
|||||||| || |||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 335 TTTGATCTTTATGACCTCTTGGGTATTGATCGAAGTTCTGATAAGTCTCAGATCAAATCA 394
Query 376 GCCTATCGTGCGTTGCAAAAACGGTGTCATCCAGATATCGCAGGAGATCCCGGTCACGAC 435
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 395 GCCTATCGTGCGTTGCAGAAACGATGTCATCCAGATATCGCAGGAGATCCCGGTCATGAT 454
Query 436 ATGGCCATCATCCTTAACGAGGCTTACCAGCTTCTCTCTGATCCGATCAT-GCGTCAAGC 494
||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 455 ATGGCCATCATTCTTAACGAGGCTTACCAGCTTCTCTCTGATCCGATC-TCGCGCCAAGC 513
Query 495 CTATGACAAGGCGCAAGCAAAACTGGAAGAACTCAGAGGTTACACAGGGAAACCGATCTA 554
||||||||||| |||||||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 514 CTATGACAAGGAGCAAGCAAAACTAGAAGAACTCAGAGGCTATACAGGGAAACCGATATA 573
Query 555 TTCGGTTTGGTGTGGACCAGAAACAGAGCAACGAGCTGCGTTTGTGGATGAGGTTAAGTG 614
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 574 CTCGGTTTGGTGTGGACCAGAAACAGAGCAACGAGCTGCGTTTGTGGACGAGGTTAAGTG 633
Query 615 TGTTGGTTGCTTAAAGTGTGCTTTGTGTGCAGAGAAAACATTTGCTATTGAAACTGCTTA 674
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TGTTGGGTGTTTGAAGTGTGCTTTGTGTGCAGAGAAAACATTTGCTATTGAAACTGCTTA 693
Query 675 CGGAAGAGCGAGGGTTGTTGCTCAATGGGCTGATCCTGAATCCAAAATCAAAGAAGCCAT 734
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CGGGAGAGCGAGGGTTGTTGCTCAATGGGCTGATCCTGAATCCAAAATCAAAGAAGCCAT 753
Query 735 CGAAGCTTGCCCTGTAGACTGCATTTCAATGGTGGAGAGATCTGACCTTGCTCCATTGGA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 CGAAGCTTGCCCTGTAGACTGCATTTCAATGGTGGAGAGATCTGACCTTGCTCCATTGGA 813
Query 795 GTTCCTTATGTCAAAGCAACCACGAGGCAACGTGAGGATCGGGGTTGGAAACACGGTTGG 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GTTCCTTATGTCAAAGCAACCACGAGGCAACGTGAGGATCGGGGTTGGAAACACGGTTGG 873
Query 855 CGAGCGTGTCTCCAACGTATTTGTTGATGTCAAGAAGTTCCAAGAAAGATACGCCCAGGC 914
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 874 TGAGCGTGTCTCCAATGTATTTGTTGATGTCAAGAAGTTCCAAGAAAGATACGCTAAAGC 933
Query 915 CATGAGCAGAACCACAAAAGAAACTTCCCAGAGAGAAGTACAAATAAGTGCAGTAGAGGC 974
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 934 TATGAGCAGAACCACAAAAGAGACCTCCCAGAGAGAAGTACAAATAAGTGCAGTAGAGGC 993
Query 975 AATAAGGTCCATTTCCAATTGGCTATACTGGAGATCATCACCGTACACGAAACCGTTGAG 1034
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 994 GATTAGGTCCATTTCCAATTGGCTATACTGGAGATCATCACCGTACACGAAACCATTGAG 1053
Query 1035 TCCAGATTCAAACATGAGTCTAACTTTCACCAAACGaaaaaaaaCAGTTGATCCAGATAT 1094
|||||| |||||||||||||||||||| |||||| |||| ||| | ||||||||||||||
Sbjct 1054 TCCAGAATCAAACATGAGTCTAACTTTTACCAAAAGAAAGAAAGCTGTTGATCCAGATAT 1113
Query 1095 CAGAAAGCTTCAAGATGCTGTGGCAGCAATGAAACAAGCAGAACAGAGCGGCGGGAAAAC 1154
||||||||||||||||| |||||||||||||||||||||||| || ||||| | || |
Sbjct 1114 CAGAAAGCTTCAAGATGTTGTGGCAGCAATGAAACAAGCAGACCAAAGCGGAAG-AAC-C 1171
Query 1155 TAAAGAAAAAGGATCAGCTTACATGCTTGGAGAAGATTATTGGACTCCATCAAACGCAGC 1214
||||| ||||||||||||||| |||||||||||||||| |||| |||||||||||| ||
Sbjct 1172 -AAAGAGAAAGGATCAGCTTACTTGCTTGGAGAAGATTACTGGAGTCCATCAAACGCTGC 1230
Query 1215 TCTTCCCTCGTCTGGAAACAACACCAGTTCCAAAGCTAGCTCGATTCCGCAAGTGACTCG 1274
||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||||||
Sbjct 1231 TCTTCCCTCATCTGGAAACAACAACGGTTCCAAAGCTAGCTCGAATCCGCAAGTGACTCG 1290
Query 1275 TAAGACATTTCCTTCAGAAGAGAAACCTGCTAGTAGAAGAGAAAATAGAAGACAGTTCAG 1334
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1291 TAAGACATTTCCTTCAGAAGAGAAACCAACTAGTAGAAGAGAAAATAGAAGACAGTTCAG 1350
Query 1335 GATAAAGAAATTCCCAATTGGGACAGCCATAGTAGCAGTATTCTTGGTTCAGTACCAAGC 1394
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 GATAAAGAAATTTCCAATTGGGACAGCCATAGTAGCAGTATTCTTGGTTCAGTACCAAGC 1410
Query 1395 AAGTTACAGAGCCGCCTCTGAGCTCAACGACCATATCGGCGGCTCGCTGGCTCTATCCAT 1454
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1411 AAGTTACAGAGCCGCCTCTGAGCTCAACGACCATATCGGCGGCTCGCTGGCTTTATCCAT 1470
Query 1455 AGTTAACAGCCCATGGCAGCAGATTTTGTTAGCCGGAATTACATGGTACTTCATTGGAGC 1514
||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 1471 AGTTAACAGTCCATGGCAGCAGATATTGTTAGCAGGAGTTACATGGTACTTCATTGGAGC 1530
Query 1515 AATGCTACTCCAACTTGTGGAAGCTGTCCAACACAAGCTAGAAGATGAAGAA 1566
|||| |||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1531 AATGTTACTCCAACTTGTGGAAGCTGTTCAACACAAGCTAGAAGATAAAGAA 1582
> AT5G23235.1 | Symbols: | pseudogene, antisense mRNA to genes
At5g23230 and At5g23240, blastp match of 34% identity and 7.4e-17
P-value to OMNI|TM0133 isochorismatase-related protein
{Thermotoga maritima MSB8} | chr5:7826028-7828724 FORWARD
LENGTH=2697
Length=2697
Score = 941 bits (509), Expect = 0.0
Identities = 590/629 (94%), Gaps = 5/629 (1%)
Strand=Plus/Minus
Query 939 TTCCCAGAGAGAAGTACAAATAAGTGCAGTAGAGGCAATAAGGTCCATTTCCAATTGGCT 998
||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1460 TTCACAGAGAGAAGTACAAATAAGTGCAGTAGAGGCGATTAGGTCCATTTCCAATTGGCT 1401
Query 999 ATACTGGAGATCATCACCGTACACGAAACCGTTGAGTCCAGATTCAAACATGAGTCTAAC 1058
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1400 ATACTGGAGATCATCACCGTACACGAAACCATTGAGTCCAGAATCAAACATGAGTCTAAC 1341
Query 1059 TTTCACCAAACGaaaaaaaaCAGTTGATCCAGATATCAGAAAGCTTCAAGATGCTGTGGC 1118
||| |||||| |||| ||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1340 TTTTACCAAAAGAAAGAAAGCTGTTGATCCAGATATCAGAAAGCTTCAAGATGTTGTGGC 1281
Query 1119 AGCAATGAAACAAGCAGAACAGAGCGGCGGGAA-AACTAAAGAAAAAGGATCAGCTTACA 1177
|||||||||||||||||| || | || |||| ||| ||||| |||||||||||||||
Sbjct 1280 AGCAATGAAACAAGCAGACCA-A--AGC-GGAAGAACCAAAGAGAAAGGATCAGCTTACT 1225
Query 1178 TGCTTGGAGAAGATTATTGGACTCCATCAAACGCAGCTCTTCCCTCGTCTGGAAACAACA 1237
|||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||
Sbjct 1224 TGCTTGGAGAAGATTACTGGAGTCCATCAAACGCTGCTCTTCCCTCATCTGGAAACAACA 1165
Query 1238 CCAGTTCCAAAGCTAGCTCGATTCCGCAAGTGACTCGTAAGACATTTCCTTCAGAAGAGA 1297
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1164 ACGGTTCCAAAGCTAGCTCGAATCCGCAAGTGACTCGTAAGACATTTCCTTCAGAAGAGA 1105
Query 1298 AACCTGCTAGTAGAAGAGAAAATAGAAGACAGTTCAGGATAAAGAAATTCCCAATTGGGA 1357
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1104 AACCAACTAGTAGAAGAGAAAATAGAAGACAGTTCAGGATAAAGAAATTTCCAATTGGGA 1045
Query 1358 CAGCCATAGTAGCAGTATTCTTGGTTCAGTACCAAGCAAGTTACAGAGCCGCCTCTGAGC 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CAGCCATAGTAGCAGTATTCTTGGTTCAGTACCAAGCAAGTTACAGAGCCGCCTCTGAGC 985
Query 1418 TCAACGACCATATCGGCGGCTCGCTGGCTCTATCCATAGTTAACAGCCCATGGCAGCAGA 1477
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 984 TCAACGACCATATCGGCGGCTCGCTGGCTTTATCCATAGTTAACAGTCCATGGCAGCAGA 925
Query 1478 TTTTGTTAGCCGGAATTACATGGTACTTCATTGGAGCAATGCTACTCCAACTTGTGGAAG 1537
| |||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 924 TATTGTTAGCAGGAGTTACATGGTACTTCATTGGAGCAATGTTACTCCAACTTGTGGAAG 865
Query 1538 CTGTCCAACACAAGCTAGAAGATGAAGAA 1566
|||| |||||||||||||||||| |||||
Sbjct 864 CTGTTCAACACAAGCTAGAAGATAAAGAA 836
Score = 521 bits (282), Expect = 6e-147
Identities = 426/491 (87%), Gaps = 28/491 (6%)
Strand=Plus/Minus
Query 28 TATAACTCAATTTGGAACTTTCTTTGTCCGTCCCAAATTAAATATCTTTCCAAGAGAGAT 87
||||||||||||||||||||| | | | |||||||||| |||||||||||||||||||||
Sbjct 2649 TATAACTCAATTTGGAACTTT-TAT-T-CGTCCCAAATAAAATATCTTTCCAAGAGAGAT 2593
Query 88 GGAAAAATAGCTTCCTACAGAGATAtttt-------tggt-tttttCAACAACTTGTTCC 139
|||||||||||||| || ||||||||||| | || | || | ||| | |||
Sbjct 2592 GGAAAAATAGCTTCATATAGAGATATTTTCAACAACTTGTCCCTCTCTA-AAC-TCATCC 2535
Query 140 -TC-T-C-TAACAGAGAAAGGGAAAAAATGTCACCGGCTATTTTTACTCCGACGACTCTT 195
| | | ||||||||| ||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 2534 ACCTTCCAAAACAGAGAAGGGGAAAATATGACACCGGCTATTTTTTCTCCGACGACTCTT 2475
Query 196 CCTCCGTCAACTGCTACTACATGGCCATGTACCACATCTCAGAAGCTCATCACCATTAGA 255
||||| ||||||| |||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 2474 CCTCCATCAACTG---CTACATGGCCATGTTCAACATCTCAGAAGCTCATCACCGTTAGA 2418
Query 256 TCACCACTCAAGCTCAAGTGTAGAGCCACTTCTTCTACATCATCTTCATCTATCACAGAC 315
|||||||||||| |||||||||||| || | | | ||||||| || |||||||| |||
Sbjct 2417 TCACCACTCAAGTTCAAGTGTAGAG-CA--AC-T-T-CATCATCATCGTCTATCACTGAC 2364
Query 316 TTTGATCTCTACGACCTCTTGGGTGTTGATCGGAGCTCTGATAAGTCTCAGATCAAATCA 375
|||||||| || |||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 2363 TTTGATCTTTATGACCTCTTGGGTATTGATCGAAGTTCTGATAAGTCTCAGATCAAATCA 2304
Query 376 GCCTATCGTGCGTTGCAAAAACGGTGTCATCCAGATATCGCAGGAGATCCCGGTCACGAC 435
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2303 GCCTATCGTGCGTTGCAGAAACGATGTCATCCAGATATCGCAGGAGATCCCGGTCATGAT 2244
Query 436 ATGGCCATCATCCTTAACGAGGCTTACCAGCTTCTCTCTGATCCGATCAT-GCGTCAAGC 494
||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 2243 ATGGCCATCATTCTTAACGAGGCTTACCAGCTTCTCTCTGATCCGATC-TCGCGCCAAGC 2185
Query 495 CTATGACAAGG 505
|||||||||||
Sbjct 2184 CTATGACAAGG 2174
Score = 418 bits (226), Expect = 9e-116
Identities = 248/259 (96%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 503 AGGCGCAAGCAAAACTGGAAGAACTCAGAGGTTACACAGGGAAACCGATCTATTCGGTTT 562
||| |||||||||||| |||||||||||||| || |||||||||||||| || |||||||
Sbjct 2090 AGGAGCAAGCAAAACTAGAAGAACTCAGAGGCTATACAGGGAAACCGATATACTCGGTTT 2031
Query 563 GGTGTGGACCAGAAACAGAGCAACGAGCTGCGTTTGTGGATGAGGTTAAGTGTGTTGGTT 622
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 2030 GGTGTGGACCAGAAACAGAGCAACGAGCTGCGTTTGTGGACGAGGTTAAGTGTGTTGGGT 1971
Query 623 GCTTAAAGTGTGCTTTGTGTGCAGAGAAAACATTTGCTATTGAAACTGCTTACGGAAGAG 682
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1970 GTTTGAAGTGTGCTTTGTGTGCAGAGAAAACATTTGCTATTGAAACTGCTTACGGGAGAG 1911
Query 683 CGAGGGTTGTTGCTCAATGGGCTGATCCTGAATCCAAAATCAAAGAAGCCATCGAAGCTT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 CGAGGGTTGTTGCTCAATGGGCTGATCCTGAATCCAAAATCAAAGAAGCCATCGAAGCTT 1851
Query 743 GCCCTGTAGACTGCATTTC 761
|||||||||||||||||||
Sbjct 1850 GCCCTGTAGACTGCATTTC 1832
Score = 296 bits (160), Expect = 4e-79
Identities = 176/184 (96%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 762 AATGGTGGAGAGATCTGACCTTGCTCCATTGGAGTTCCTTATGTCAAAGCAACCACGAGG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 AATGGTGGAGAGATCTGACCTTGCTCCATTGGAGTTCCTTATGTCAAAGCAACCACGAGG 1649
Query 822 CAACGTGAGGATCGGGGTTGGAAACACGGTTGGCGAGCGTGTCTCCAACGTATTTGTTGA 881
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1648 CAACGTGAGGATCGGGGTTGGAAACACGGTTGGTGAGCGTGTCTCCAATGTATTTGTTGA 1589
Query 882 TGTCAAGAAGTTCCAAGAAAGATACGCCCAGGCCATGAGCAGAACCACAAAAGAAACTTC 941
||||||||||||||||||||||||||| | || |||||||||||||||||||| || ||
Sbjct 1588 TGTCAAGAAGTTCCAAGAAAGATACGCTAAAGCTATGAGCAGAACCACAAAAGAGACCTC 1529
Query 942 CCAG 945
||||
Sbjct 1528 CCAG 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81124080720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5