BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489184
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23250.1 | Symbols: | Succinyl-CoA ligase, alpha subunit | ... 1807 0.0
AT5G08300.1 | Symbols: | Succinyl-CoA ligase, alpha subunit | ... 1059 0.0
> AT5G23250.1 | Symbols: | Succinyl-CoA ligase, alpha subunit
| chr5:7830360-7832843 FORWARD LENGTH=1478
Length=1478
Score = 1807 bits (978), Expect = 0.0
Identities = 1185/1281 (93%), Gaps = 30/1281 (2%)
Strand=Plus/Plus
Query 1 AACGAAGATCGCTGAAAATTTCCTTTCCCATTTGGCTGGCTAATAGGGTTCAGTACAAAA 60
||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1 AACGAAGATCGCTGAAAATTTCCTTTCCCATTTCGCT-G--AATAGGGTTCAGTACAAAA 57
Query 61 TTC-G----G-A--TTT----A----AGATCATTGAAACAGCCATGTCTAGGCAGGTCAC 104
||| | | | ||| | ||||||||||||||||||||||||||||||||||
Sbjct 58 TTCGGAATCGTAGGTTTAAGAATTTTAGATCATTGAAACAGCCATGTCTAGGCAGGTCAC 117
Query 105 CAGACTTCTCGGATCTCTTCGCCGTT-C--CGGCGGC-G--GCGGCAGTTCAGAGTTCTG 158
|||||||||||||||||||||| || | ||||||| | ||||||| ||| || ||||
Sbjct 118 GAGACTTCTCGGATCTCTTCGCCATTCCGGCGGCGGCTGCAGCGGCAGCTCAAAGGTCTG 177
Query 159 CTCTCTCACTTCATTGACACAGTCTCGCTCCTTCGGGACAACTCCTCCGCCTCCTGCGGC 218
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTCTCTCACTTCATTGGTACAGTCTCGCTCCTTCGGGACAACTCCTCCGCCTCCTGCGGC 237
Query 219 TGTCTTTGTCGACAAAAACACCCGCGTCATCTGCCAAGGTATTACCGGAAAGAATGGTAC 278
||||||||||||||||| || || ||||||||||||||||||||||||||||| || ||
Sbjct 238 GGTCTTTGTCGACAAAAATACACGTGTCATCTGCCAAGGTATTACCGGAAAGAACGGGAC 297
Query 279 CTTCCACACTGAACAAGCCATTGAATACGGCACCAAAATGGTAGCAGGAGTGACACCAAA 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTTCCACACTGAACAAGCCATTGAATACGGCACCAAAATGGTAGCAGGAGTGACACCAAA 357
Query 339 GAAGGGTGGAACTGAACATTTGGGTCTACCTGTTTTTAATACTGTTGCTGAAGCTAAGGC 398
|||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 358 GAAGGGTGGAACAGAACATTTGGGGCTACCTGTTTTCAACACTGTTGCTGAAGCTAAGGC 417
Query 399 TGAGACTAAAGCCAATGCCTCTGTGATTTACGTACCTGCGCCTTTCGCTGCTGCTGCTAT 458
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 TGAGACTAAAGCCAATGCCTCTGTGATCTACGTACCTGCGCCTTTCGCTGCTGCTGCTAT 477
Query 459 CATGGAAGGTTTAGCTGCTGAGTTAGATCTCATTGTCTGCATTACTGAAGGAATTCCTCA 518
|||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 478 CATGGAAGGTTTAGCTGCTGAGTTAGATCTTATTGTTTGTATCACTGAAGGAATTCCTCA 537
Query 519 ACATGACATGGTTCGCGTAAAGGCTGCTCTTAACAGTCAATCAAAAACTAGGCTAATTGG 578
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 538 ACATGACATGGTTCGTGTAAAGGCTGCTCTTAACAGTCAATCAAAAACTAGGCTGATTGG 597
Query 579 CCCTAACTGCCCTGGTATTATCAAACCTGGTGAATGCAAGATTGGGATCATGCCGGGATA 638
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 CCCTAATTGTCCTGGTATTATCAAACCTGGTGAATGCAAGATTGGGATCATGCCAGGATA 657
Query 639 CATCCACAAGCCGGGGAAGATAGGGATTGTTTCTCGATCTGGAACATTGACATATGAAGC 698
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CATACACAAGCCGGGGAAGATAGGGATTGTTTCTCGATCTGGAACATTGACATATGAAGC 717
Query 699 TGTTTTCCAAACTACTGCAGTAGGTCTGGGGCAATCTACATGTGTAGGAATCGGTGGGGA 758
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 718 TGTTTTCCAAACTACTGCAGTAGGTTTGGGGCAATCTACTTGTGTAGGAATTGGTGGGGA 777
Query 759 TCCGTTTAATGGCACAAATTTTGTTGACTGCTTGGAGAAGTTCTTTGCTGACCCTCAAAC 818
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 778 TCCGTTTAATGGGACAAATTTTGTTGACTGCTTGGAGAAGTTCTTTGTTGACCCCCAAAC 837
Query 819 AGAAGGTATCGTTCTCATTGGAGAAATCGGTGGTACTGCAGAAGAAGATGCCGCTGCTTT 878
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 838 AGAAGGTATCGTTCTCATTGGAGAAATCGGTGGGACTGCAGAAGAAGATGCCGCTGCTTT 897
Query 879 GATTAAGGAAAGTGGTACAGACAAGCCTGTAGTTGCTTTCATTGCTGGACTTACTGCACC 938
||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 898 GATAAAGGAAAATGGTACAGACAAGCCTGTAGTTGCTTTCATAGCCGGACTTACTGCACC 957
Query 939 ACCCGGGCGTCGTATGGGTCATGCGGGAGCCATTGTTTCTGGTGGTAAGGGCACAGCTCA 998
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 958 ACCAGGGCGTCGTATGGGTCATGCGGGAGCCATTGTTTCCGGTGGTAAGGGCACGGCTCA 1017
Query 999 AGACAAGATAAAGAGCCTAAGAGACGCAGGAGTTAAGGTGGTTGAGTCACCAGCTAAGAT 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AGACAAGATAAAGAGCCTAAGAGACGCAGGAGTTAAGGTGGTTGAGTCACCAGCTAAGAT 1077
Query 1059 TGGTGCGGCGATGTTTGAGATTTTCCAAGAAAGAGGTCTTTTGAAGTGAAACTGAATTTA 1118
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1078 TGGTGCGGCGATGTTTGAGCTTTTCCAAGAAAGAGGTCTTTTGAAGTGAAACTGAAGTAA 1137
Query 1119 TGTCATAAAACGATGAGATGTTTCAGGAATCAACCTCTCTAAATAACAACAGTTTGCAAA 1178
| |||||| || ||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1138 TATCATAATACAATGAGTTGTTTCAGGAATCAACCTCTCTAA-TAACAACAGTTTGCCAA 1196
Query 1179 AATAGAAGAGAGAAATGGAAACCCTAAAttttttttCCACAAAAAGATTATTGCAGATAG 1238
|||||||||| |||| |||| |||||| || || ||| | ||| |||||||| |
Sbjct 1197 AATAGAAGAGTGAAACGGAATTCCTAAAATTCCTTACCATGGA--GATAATTGCAGAGAA 1254
Query 1239 AAAAA--TAGTCTCttttttt 1257
||||| ||||| ||||||||
Sbjct 1255 AAAAAAATAGTCACTTTTTTT 1275
> AT5G08300.1 | Symbols: | Succinyl-CoA ligase, alpha subunit
| chr5:2667412-2669923 FORWARD LENGTH=1462
Length=1462
Score = 1059 bits (573), Expect = 0.0
Identities = 830/954 (87%), Gaps = 18/954 (2%)
Strand=Plus/Plus
Query 160 TCTCTCACTTCATTGACACAGTCTCGCTCCTTCGGGAC-AACTCCTCCGCCTCCTGCGGC 218
||||||||||| ||||| || ||||||||||||| | | | ||||| |||||||||||
Sbjct 261 TCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTCGGA-TCCTCATCCTCCTGCGGC 319
Query 219 TGTCTTT-GTCGACAAAAACACCCGCGTCATCTGCCAAGGTATTACCGGAAAGAATGGTA 277
|| ||| || ||||||||||| || ||| |||| ||||| || ||||||||||| || |
Sbjct 320 GGT-TTTCGTTGACAAAAACACACGAGTCCTCTGTCAAGGCATCACCGGAAAGAACGGCA 378
Query 278 CCTTCCACACTGAACAAGCCATTGAATACGGCACCAAAATGGTAGCAGGAGTGACACCAA 337
| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 379 CTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAATGGTGGCAGGAGTGACACCGA 438
Query 338 AGAAGGGTGGAACTGAACATTTGGGTCTACCTGTTTTTAA-TACTGTTGCTGAAGCTAAG 396
||||||||||||| ||||| |||||||| || ||||| || | |||||||||||||||||
Sbjct 439 AGAAGGGTGGAACAGAACACTTGGGTCTCCCAGTTTTCAACT-CTGTTGCTGAAGCTAAG 497
Query 397 GCTGAGACTAAAGCCAATGCCTCTGTGATTTACGTACCTGCGCCTTTCGCTGCTGCTGCT 456
||||| || ||||||||||||||||||||||| || ||||| ||||| ||||||||||||
Sbjct 498 GCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGCTCCTTTTGCTGCTGCTGCT 557
Query 457 ATCATGGAAGGT-TTAGCTGCTGAGTTAGATCTCATTGTCTGCATTACTGAAGGAATTCC 515
|| ||||| ||| || | |||||||||||||| ||||| || || || |||||||| ||
Sbjct 558 ATTATGGAGGGTATT-GAGGCTGAGTTAGATCTTATTGTGTGTATCACCGAAGGAATCCC 616
Query 516 TCAACATGACATGGTTCGCGTAAAGGC-TGCTCTTAACAGTCAATCAAAAACTAGGCTAA 574
||||||||||||||| || ||||| || |||||||||||||||||| ||||||||||| |
Sbjct 617 TCAACATGACATGGTACGTGTAAA-GCATGCTCTTAACAGTCAATCGAAAACTAGGCTGA 675
Query 575 TTGGCCCTAACTGCCCTGGTATTATCAAACCTGGTGAATGCAAGATTGGGATCATGCCGG 634
|||| || ||||||||||| |||||||| |||||||||||||| ||||| || |||||||
Sbjct 676 TTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAAAATTGGAATTATGCCGG 735
Query 635 GATACATCCACAAGCCGGGGAAGATAGGGATTGTTTCTCGATCTGGAACATTGACATATG 694
|||||||||||||||| |||||||| || ||||| || ||||||||||| ||||||||||
Sbjct 736 GATACATCCACAAGCCTGGGAAGATTGGAATTGTCTCACGATCTGGAACCTTGACATATG 795
Query 695 AAGCTGTTTTCCAAACTACTGCAGTAGGTCTGGGGCAATCTACATGTGTAGGAATCGGTG 754
|||||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||||
Sbjct 796 AAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTACTTGTGTAGGAATCGGTG 855
Query 755 GGGATCCGTTTAATGGCACAAATTTTGTTGACTGCTTGGAGAAGTTCTTTGCTGACCCTC 814
||||||| ||||| || ||||| ||||| |||||||||||||| ||||||| ||| ||||
Sbjct 856 GGGATCCTTTTAACGGGACAAACTTTGTCGACTGCTTGGAGAAATTCTTTGTTGATCCTC 915
Query 815 AAACAGAAGGTATCGTTCTCATTGGAGAAATCGGTGGTACTGCAGAAGAAGATGCCGCTG 874
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |
Sbjct 916 AAACAGAAGGTATCGTTCTCATTGGAGAAATCGGAGGCACTGCAGAAGAAGATGCTGCAG 975
Query 875 CTTTGATTAAGGAAAGTGGTACAGACAAGCCTGTAGTTGCTTTCATTGCTGGACTTACTG 934
| ||||| |||| ||||||||| || |||||||| |||||||| ||||||||||||||||
Sbjct 976 CATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTTTATTGCTGGACTTACTG 1035
Query 935 CACCACCCGGG-CGTCGTATGGGTCATGCGGGAGCCATTGTTTCTGGTGGTAAGGGCACA 993
||||||| ||| ||||| ||||||||||| |||||||||||||| |||||||| || ||
Sbjct 1036 CACCACC-GGGTCGTCGAATGGGTCATGCCGGAGCCATTGTTTCCGGTGGTAAAGGTACG 1094
Query 994 GCTCAAGACAAGATAAAGAGCCT-AAGAGACGCAGGAGTTAAGGTGGTTGAGTCACCAGC 1052
||||| ||||| || ||||| | || || || ||||| ||||| ||||| || || ||
Sbjct 1095 GCTCAGGACAAAATTAAGAGTTTGAAT-GATGCTGGAGTGAAGGTTGTTGAATCTCCGGC 1153
Query 1053 TAAGATTGG-TGCGGCGATGTTTGAGAT-TTTCCAAGAAAGAGGTCTTTTGAAG 1104
||||||||| | | ||||||| |||| | |||| ||||||||||||||||||||
Sbjct 1154 TAAGATTGGAT-CAGCGATGTATGAGCTCTTTC-AAGAAAGAGGTCTTTTGAAG 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5