BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489185
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23260.2 | Symbols: TT16, ABS, AGL32 | K-box region and MADS... 1456 0.0
> AT5G23260.2 | Symbols: TT16, ABS, AGL32 | K-box region and MADS-box
transcription factor family protein | chr5:7836096-7838505
FORWARD LENGTH=1019
Length=1019
Score = 1456 bits (788), Expect = 0.0
Identities = 908/966 (94%), Gaps = 8/966 (1%)
Strand=Plus/Plus
Query 1 GTCATCCAACCTCAAACTCCATTTCCAGATCCCCAAGAACACAGCTCAACAAAaaggagg 60
||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 GTCATCCAACCTCAATCTCCGTTTCCAGATCCCCAAGAACACAGCTCAACAAAAAAGAGG 60
Query 61 aagagggagcaactaacaagaggaagaagagagagatggggagagggaagattgagataa 120
|||||||||| ||| | ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 61 AAGAGGGAGCCACTCATAAGAGGAAGAAGAGAGAGATGGGTAGAGGGAAGATAGAGATAA 120
Query 121 agaagatagagaatcagaCGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAGATAGAGAATCAGACGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTA 180
Query 181 TGAAGAAGACTCGTGAGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCT 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAAAGAAGACTCGTGAGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCT 240
Query 241 CTGCCACCGGAAAGCTCTCAGAGTTCTGCTCCGAACAGGACAGGATGCCTCAACTCATTG 300
| |||||||||||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CAGCCACCGGAAAGCTTTCCGAGTTCTGCTCCGAACAGAACAGGATGCCTCAACTCATTG 300
Query 301 ACCGATACTTGCATACCAACGGACTGCGACTTCCTGATCATCAGGACGACCAGGATCAAT 360
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||
Sbjct 301 ACCGATACTTGCATACCAACGGATTGCGACTTCCTGATCATCATGACGACCAGGAGCAAT 360
Query 361 TGTACCATGAGATGGAAGTATTAAGAAGAGAGACATGTAACCTTGAGCTTCATCTGCGTC 420
|| |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 361 TGCACCATGAGATGGAACTACTAAGAAGAGAGACATGTAACCTTGAGCTTCGTCTGCGTC 420
Query 421 CCTAT-CAAGGACATGACTTAGCCTCCATTCCTCCTCATGAGCTTGACGGACTCGAGCGA 479
| | | || ||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 421 CAT-TCCATGGACATGACTTAGCCTCCATTCCTCCTAATGAGCTTGACGGACTCGAGAGA 479
Query 480 CAGCTCGAACATTCTGTCCTCAAAGTCCGTGAGCGTAAGAATGAGTTAATGCAGCAACAG 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAGCTAGAACATTCTGTCCTCAAAGTCCGTGAGCGTAAGAATGAGTTAATGCAGCAACAG 539
Query 540 TTGGAGAATCTAAGCAGAAAGAGGCGGATGCTAGAAGAAGATAACAACAACATGTACCGT 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 TTGGAGAATCTAAGCAGAAAGAGGAGGATGCTAGAAGAAGATAACAACAACATGTACCGT 599
Query 600 TGGCTTCATGAGCATCGTGCAGCGATTGAGTTTCAGCAAGCTGGGATAGAGACGAAACCA 659
|||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||
Sbjct 600 TGGCTTCATGAGCATCGTGCAGCGATGGAGTTTCAACAAGCTGGGATAGATACCAAACCA 659
Query 660 GGGGAGTATCAACAGTTTCTAGAGCAGCTTCAGTACTATAAACCAGGGGAGTATGATCAA 719
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 660 GGGGAGTATCAACAGTTTATAGAGCAGCTTCAGTGCTATAAACCAGGGGAGTAT---CAG 716
Query 720 CAGTTTCTAGAGCAGCAGCAACAACAACAACCAAACAGTGTTCTTCAGCTTGCTACACTT 779
|||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 717 CAGTTTCTAGAGCAGCAGCAACAACAAC--C-AAACAGCGTTCTTCAGCTTGCTACACTT 773
Query 780 CCTTCCGAGATTGATCCTAATTACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGAT 839
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CCTTCTGAGATTGATCCTACTTACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGAT 833
Query 840 CCAACGGCCAAGAGCGATTAATATAATCCTCAATAGATATCTACTCGTTCTTTCCGGAGA 899
||||||||| ||| |||||||| ||| |||||||||||||||||| |||||| |||||
Sbjct 834 CCAACGGCCCAGAATGATTAATACAATTCTCAATAGATATCTACTCTTTCTTTATGGAGA 893
Query 900 CAGATTAATGAACTTTTACTACCTATATTTTTATTAGCCAATGTCTTCTTTTGTGTGGCC 959
|||||| ||||||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct 894 CAGATTCATGAACTTTTATTACCTATATTTTGATAAGCCAGTGTCTTCTTTTGTGTGGCT 953
Query 960 ATGGAA 965
||||||
Sbjct 954 ATGGAA 959
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 966 TTGGTTATATAATTAATCATCATTATTAC 994
|||||||||||||||||||||||||||||
Sbjct 991 TTGGTTATATAATTAATCATCATTATTAC 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5