BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489189
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23280.1 | Symbols: | TCP family transcription factor | ch... 1629 0.0
AT5G08330.1 | Symbols: | TCP family transcription factor | ch... 152 7e-36
> AT5G23280.1 | Symbols: | TCP family transcription factor |
chr5:7842971-7844275 FORWARD LENGTH=1305
Length=1305
Score = 1629 bits (882), Expect = 0.0
Identities = 1139/1254 (91%), Gaps = 54/1254 (4%)
Strand=Plus/Plus
Query 28 AACAACATCAACAACAACGACGGAGTTATGATCTCATCAAATGGAGCTTTAATCGAACAA 87
||||||| ||| |||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 71 AACAACAACAATAACAACGATGGTCTTATGATCTCATCAAACGGAGCTTTAATCGAACAA 130
Query 88 CCATCATCAGTCGTTGTGAAGAAACCTCCGGCTAAAGATCGACATAGCAAAGTCGATGGA 147
| | |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 131 CAACCATCAGTCGTTGTGAAGAAACCACCGGCGAAAGATCGACATAGCAAAGTCGATGGA 190
Query 148 AGAGGAAGAAGAATCCGTATGCCTATTATTTGCGCAGCTCGTGTTTTTCAGCTAACGAGA 207
||||| ||||||||||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct 191 AGAGGGAGAAGAATCCGTATGCCGATTATATGTGCTGCTCGTGTTTTTCAGCTAACGAGA 250
Query 208 GAGCTTGGTCACAAATCAGATGGTCAAACGATTGAATGGTTACTTCGTCAAGCAGAGCCT 267
||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 251 GAGCTTGGTCATAAGTCAGATGGCCAAACAATTGAATGGTTACTTCGTCAAGCAGAGCCT 310
Query 268 TCGATTATAGCTGCAACAGGGACTGGTACAACTCCGGCGAGTTTCTCAACTGCTTCAGTC 327
|| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 311 TCTATTATAGCTGCAACAGGAACTGGTACAACTCCAGCGAGTTTCTCAACTGCTTCTGTC 370
Query 328 TCAATCCGTGGAACGAATTCAACTTCTTTATCATCTTCTTTAGATCATAAACCCACTTCT 387
|| ||||||||| | | ||| ||| | | ||||||||||||||||||||||||||
Sbjct 371 TCTATCCGTGGAGC-CA-CCAA-TTC----T-A-CTTCTTTAGATCATAAACCCACTTCT 421
Query 388 TTACTTGGTGGTTCGTCACCGTTTATACTTGGGAAACGTGTGAGAGCTGATGA-G---G- 442
|||||||||||| |||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 422 TTACTTGGTGGTACGTCACCGTTTATACTTGGGAAACGTGTTAGAGCTGATGAGGATAGT 481
Query 443 -ATAATA---ATAATCATAATTCTGGTGGGAAAGATGAGTCCTTTACGACGACACCAGCT 498
|||||| ||||||||| ||||| ||| ||||||||| |||||||||| |||||||||
Sbjct 482 AATAATAGTCATAATCATAGTTCTGTTGGTAAAGATGAGACCTTTACGACAACACCAGCT 541
Query 499 GGGTTTTGGGCTGTTCCGGCGAGGCCGGATTTTGGACAAGTTTGGAGTTTTACAGGAGCT 558
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 542 GGGTTTTGGGCTGTTCCGGCGAGGCCGGATTTTGGACAAGTTTGGAGTTTTGCTGGAGCT 601
Query 559 CCACAAGAGATGTTTTT---ACAACAGCATCATCA--A-CAACCATTGTTTGTTCATCAG 612
||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||
Sbjct 602 CCACAAGAGATGTTTTTACAACAACAACATCATCATCAGCAACCATTGTTTGTTCATCAG 661
Query 613 CAGCAACAACAACAAGCTGCAATGGGTGAAGCTTCTGCTGCTAGAGTTGGGAATTATCTT 672
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CAACAGCAACAACAAGCTGCAATGGGTGAAGCTTCTGCTGCTAGAGTTGGGAATTATCTT 721
Query 673 CCGGGTCATCTTAATTTGCTTGCTTCTTTATCCGGTGGATCTCCCGGGTCGGGTCGAAGA 732
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 722 CCGGGTCATCTTAATTTGCTTGCTTCTTTATCCGGTGGATCTCCCGGGTCGGATCGAAGA 781
Query 733 GAGGAAGATCCACGTTAAAG-T--AAGCCCTTTTAGGTTTGAGGGCAAA-TTTGGTATAT 788
|||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||
Sbjct 782 GAGGAAGATCCACGTTAATGGTTTAAGCCCTTTTAGGTTTGAGGGCAAAATTTGGTATAT 841
Query 789 ATATTTATTAtcttctcttctcttttgttgtcattgtttctctctctgtgtgtgttttag 848
||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 842 ATATTTATTATCTTCTCTTCTCTATTGTTGTCATTGTTTCTCTAT--GTGTGTGTTTTAG 899
Query 849 tgttgttAGAGATTGATTTGGTTTCAAAATCTCTGCAAGTGATTTGAGAGTTT-CGTTAG 907
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 900 TGTTGTTAGAGATTGATTTGGTTTCAGAATCTCTGCAAGTGATTTGAGAGTTTTCGTTAG 959
Query 908 CTTTAAGTAAGTTAA-GAACTGTTGTTTTTGATTAGGGTTAAATTAGGGTTTAAGAATCT 966
||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTTTAAGTAAGTTAAAGA-CGGTTGTTTTTGATTAGGGTTAAATTAGGGTTTAAGAATCT 1018
Query 967 GGATTTTGtttttttGGAGGGAGATTCGATTTCTTATCGGATCCAAGATTACTTTTAGGA 1026
| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 G--TT--GTTTTTTTGGAGGGAGAT-CGATTTCTTATCGGATCCAAGATTACTTTTAGGA 1073
Query 1027 AAAA-GGGAAAAATTCAGAAACCGCGGGGGtttctttttcacctttttttt--gtgtctg 1083
|||| ||||||| |||||||||| ||| |||||||||| | | |||||||| |||||||
Sbjct 1074 AAAAAGGGAAAATTTCAGAAACCACGGTGGTTTCTTTTCCTCTTTTTTTTTTTGTGTCTG 1133
Query 1084 gttttttttttttCCCGGCGAAAGAGAGCCGCCGATTAAAATTCCAGATATACTATT-AA 1142
|||||||||| || || |||| ||||||| ||||||||||| |||||||| |||| ||
Sbjct 1134 -TTTTTTTTTT--CC-GGTGAAACAGAGCCGTCGATTAAAATTTCAGATATA-TATTTAA 1188
Query 1143 ATATTTTTATATGGTTTGTTGTTG------CTAATTTGTGTAATGTGTTATAGCAATTGT 1196
|| |||| |||||||||||||||| |||||| ||||||||||||| | |||||||
Sbjct 1189 ATGTTTTAATATGGTTTGTTGTTGTTGTTGCTAATT-GTGTAATGTGTTACAACAATTGT 1247
Query 1197 GGTGAAGCATTTGCGTAAGCTGTTAACCACGTTTGTTTTTAATAAATGTTTCGA 1250
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1248 GGTGAAGCATTTGCGTAAGCTGTTAACCACGTTTATTTCTAATAAATGTTTCGA 1301
Score = 78.7 bits (42), Expect = 1e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1 AAACCCAGATCGAAAACCATGTCTATTAACAACATCAACAACAAC 45
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 29 AAACCCAGATCGAAAACCATGTCTATTAACAACAACAACAACAAC 73
> AT5G08330.1 | Symbols: | TCP family transcription factor |
chr5:2680744-2681813 FORWARD LENGTH=1070
Length=1070
Score = 152 bits (82), Expect = 7e-36
Identities = 217/277 (78%), Gaps = 30/277 (11%)
Strand=Plus/Plus
Query 498 TGGGTTTTGGGCTGTTCCGGCGAGGCCGGATTTTGGACAAGTTTGGAG-TTT--TACAGG 554
||||||||||||||||||||||||||||||||| |||||||| ||||| ||| || ||
Sbjct 519 TGGGTTTTGGGCTGTTCCGGCGAGGCCGGATTTCGGACAAGTCTGGAGCTTTGCAACCGG 578
Query 555 AGCTCCACAAGAGAT-GTTTTTACAACAGCATCATCAA-CAAC--CATTGTTTGT---TC 607
|||||||| || || |||||| | ||||| || ||| || | || | || || |
Sbjct 579 AGCTCCACCGGAAATGGTTTTTGC-GCAGCAGCAGCAACCAGCTACACTCTTCGTCCGCC 637
Query 608 ATCAGCAGCAACAACAA-------------CA--AGCTGCAATGGGTGAAGCTTCTGCTG 652
| ||||||||||| ||| || ||||||||||||||| ||||| || |
Sbjct 638 ACCAGCAGCAACAGCAAGCTTCCGCCGCCGCAGCAGCTGCAATGGGTGAGGCTTCAGCAG 697
Query 653 CTAGAGTTGGGAATTATCTTCCGGGTCATC-T-T-AATTTGCTTGCTTCTTTATCCGGTG 709
|||||||||||||||||||||||||||||| | | ||||||||||||||||| || ||||
Sbjct 698 CTAGAGTTGGGAATTATCTTCCGGGTCATCATCTCAATTTGCTTGCTTCTTTGTCTGGTG 757
Query 710 GATCTCCCGGGTCGGGTCGAAGAGAGGAAGATCCACG 746
|| || |||||||||||| || || || || |||||
Sbjct 758 GAGCTAACGGGTCGGGTCGGAGGGAAGACGA-CCACG 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5