BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489192
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23310.1 | Symbols: FSD3 | Fe superoxide dismutase 3 | chr5:... 1410 0.0
> AT5G23310.1 | Symbols: FSD3 | Fe superoxide dismutase 3 | chr5:7850523-7852532
FORWARD LENGTH=1184
Length=1184
Score = 1410 bits (763), Expect = 0.0
Identities = 833/867 (96%), Gaps = 4/867 (0%)
Strand=Plus/Plus
Query 55 GACGACGACAGTGGGAGGAACAATGAGTTCTTGTGTTGTGACGACAAGCTGTTTCTATAC 114
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 80 GACGACAACAGTGGGAGGAACTATGAGTTCTTGTGTTGTGACGACAAGCTGTTTCTATAC 139
Query 115 AAATTCAGATTCTAGTATACGTTTGAAATCCTCCAAGCTCGTCAATCAGAGTAACCAGCA 174
|| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 140 AATTTCAGATTCTAGTATACGTTTGAAATCCCCCAAGCTCCTCAATCTGAGTAACCAGCA 199
Query 175 GAGAAGACACTCTCTTAGGCCTCGAGGTGGTTTAAAGGTTGAAGCTTACTACGGTCTAAA 234
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 200 GAGAAGACGCTCTCTTAGGTCTCGAGGTGGTTTAAAGGTTGAAGCTTACTACGGTCTAAA 259
Query 235 GACACCTCCTTATCCACTTGATGCTTTGGAACCGTATATGAGTCGAAGAACACTAGAAGT 294
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 260 GACACCTCCTTATCCACTTGATGCTTTGGAGCCGTATATGAGTAGAAGAACACTAGAAGT 319
Query 295 GCATTGGGGGAAACACCATCGAGGTTATGTAGACAATCTGAATAAACAGTTAGGGAAAGA 354
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 320 GCATTGGGGAAAACACCATCGAGGTTATGTAGATAATCTGAATAAACAGTTAGGGAAAGA 379
Query 355 TGATAGACTCTATGGATACACCATGGAAGAGCTTATCAAGGCTACATACAACAACGGGAA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TGATAGACTCTATGGATACACCATGGAAGAGCTTATCAAGGCTACATACAACAACGGGAA 439
Query 415 TCCTTTGCCCGAGTTCAACAACGCTGCACAGGTCTATAACCATGATTTCTTCTGGGAGTC 474
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCCTTTACCCGAGTTCAACAACGCTGCACAGGTCTATAACCATGATTTCTTCTGGGAGTC 499
Query 475 GATGCAACCTGGTGGTGGAGACATGCCTCAAAAGGGTGTTCTTGAGCAGATTGACAAGGA 534
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 500 GATGCAACCTGGTGGTGGAGACACGCCTCAAAAGGGTGTTCTTGAGCAGATTGATAAGGA 559
Query 535 TTTCGGTTCTTTCACAAATTTCAGAGAAAAGTTCACTAATGCTGCTCTTACTCAGTTTGG 594
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 560 TTTTGGTTCTTTCACAAATTTTAGAGAAAAGTTCACTAATGCAGCTCTTACTCAGTTTGG 619
Query 595 TTCTGGCTGGGTCTGGCTTGTCTTAAAGAGGGAAGAGAGAAGACTTGAGGTGGTCAAAAC 654
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 620 TTCTGGATGGGTCTGGCTTGTCTTAAAGAGGGAAGAGAGAAGGCTTGAGGTGGTCAAAAC 679
Query 655 CTCAAACGCCATTAACCCACTCGTGTGGGACGATATTCCAATCATCAGCTTGGATGTGTG 714
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 680 CTCAAACGCCATTAACCCACTCGTGTGGGACGATATTCCAATCATCTGCGTGGATGTGTG 739
Query 715 GGAGCACTCTTATTATCTGGACTACAAGAACGACAGGGCTAGGTATATAAACACATTTCT 774
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 740 GGAGCACTCTTATTATCTGGACTACAAGAACGACAGGGCTAAGTATATAAACACATTTCT 799
Query 775 AAACCACTTGGTGTCGTGGAACGCTGCCATGAGTCGGATGGCCCGTGCAGAAGCGTTTGT 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GAACCACTTGGTGTCGTGGAACGCTGCCATGAGTCGGATGGCCCGTGCAGAAGCGTTTGT 859
Query 835 GAATCTTGGTGAACCCAATATCCCAATCGCTTAAGCTAAA-AGCCTCTTTTTG-AGATCT 892
|||||||||||||||||| ||||||||||||||||||||| | | || ||| | | ||
Sbjct 860 GAATCTTGGTGAACCCAACATCCCAATCGCTTAAGCTAAACA-CAACTCCTTGGAAA-CT 917
Query 893 TGGGCAGTCTCATTTTTGCAAACAGAG 919
|||||||||||||||||||||||||||
Sbjct 918 TGGGCAGTCTCATTTTTGCAAACAGAG 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5