BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489194
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23330.1 | Symbols: | Nucleotidylyl transferase superfamily... 1640 0.0
AT5G08340.1 | Symbols: | Nucleotidylyl transferase superfamily... 579 3e-164
> AT5G23330.1 | Symbols: | Nucleotidylyl transferase superfamily
protein | chr5:7854129-7855813 FORWARD LENGTH=1205
Length=1205
Score = 1640 bits (888), Expect = 0.0
Identities = 1078/1167 (92%), Gaps = 24/1167 (2%)
Strand=Plus/Plus
Query 1 CCGGCGAAGAGTTTCGGAGAGCAAGTTTGGT-TTTTTAGGGGTTTGAGCAGTAGAGTCGG 59
|||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||
Sbjct 1 CCGGCGAAGAGTTTCGGAGAACAAGTTTGGTCTTTTTAGGGGTTTGAGCAGTGGAGTCGG 60
Query 60 AGAGACCATGTTGTGCGGAGGCTCTCGTGCCTCCGTGCATTTGTTGGACCACCGTCATCC 119
| |||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 61 -TA-ACCATGTTATGCGGAGGCTCTCGCGCCTCCGTGCATTTGTGGGACCATCGTCATCC 118
Query 120 TCCTACGCTCGGTGCTAAGGTCTTGCGGCAATCTTCATTCGTCCTTAGACCTTGTTCGGC 179
||||| ||||||||||||||| |||||| ||||||| ||| | || ||||||||||||||
Sbjct 119 TCCTAGGCTCGGTGCTAAGGTTTTGCGGAAATCTTCGTTCATGCTCAGACCTTGTTCGGC 178
Query 180 TAAATCGCAGCAGCCGATGAAGTCGTCGTCGTATAGGTCTCACTGTAAAA---C------ 230
|| ||||||||||| ||| |||||||||| | ||||||||||||||||| |
Sbjct 179 TATATCGCAGCAGCGGATAAAGTCGTCGT--T-TAGGTCTCACTGTAAAACTCCAAGAAA 235
Query 231 --T-CCAGCTCCTCTCGATTGTTTCAGCCAGGGAGATGATAATCTTGAGCTTTCAGCTGA 287
| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 236 AATCCCAGCTCCTCTCGATTGTTTCAGCCAGGGAGATGATCATCCTGAGCTTTCAGCTGA 295
Query 288 AGGGCTTTCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATAT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGGGCTTTCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATAT 355
Query 348 CGGTCATCGAGAGCTTGCAATCCAAGCTGCAAGAACTGGTACTCCATATCTATTGTCGTT 407
||||||||||||||||||||| ||||||||||||| ||||||||| |||||| |||||||
Sbjct 356 CGGTCATCGAGAGCTTGCAATTCAAGCTGCAAGAATTGGTACTCCGTATCTACTGTCGTT 415
Query 408 TGTTGGAATGGCTGAAGTACTTGGTTGGAAACCTAGAGCACCGATAGTAGCCAAATGCGA 467
||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 416 TGTTGGATTGGCTGAAGTACTTGGTTGGAAGCCTAGAGCACCAATAGTAGCCAAATGCGA 475
Query 468 TAGAAAACGGGTGCTTTCCTCTTGGGCATCGTATTGTGGTAACATAGCACCGGTAGAGTT 527
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CAGAAAACGAGTGCTTTCCTCTTGGGCATCGTATTGTGGTAACATAGCACCGGTAGAGTT 535
Query 528 TGAGATTGAATTTGCCAGCGTTCGACACCTTAACCCACAGCAGTTTGTCGAGAAGTTGTC 587
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 536 TGAGATTGAATTTGCCAGCGTTCGACACCTTAACCCACAACAGTTTGTCGAGAAGTTGTC 595
Query 588 AAGAGAGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGC 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AAGAGAGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGC 655
Query 648 TTCTGGTGACGCCTCTGAACTTGTGAGGTTATGTAAAGAGTACGGTATCAGCGCTTACAT 707
||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 656 TTCTGGTGACGCCTCTGAACTTGTGAGGTTATGCAAAGACTTTGGTATCAGCGCTTACAT 715
Query 708 CATTAACTCGGTGATGGATAAGAACCAAGTCTCTGGAAACACGGACACAGAGGAGGACTC 767
||||||||| ||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 716 CATTAACTCCGTGATGGATAAGAACCAAGTCTCTGTAAACACAGAG---GAGGAGGACTC 772
Query 768 AAAGTCAAAAGAAAGAGGACAAGTCTCGTCCACACGAGTCCGACATGCTCTTGCTGCAGG 827
|||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||
Sbjct 773 AAAGTCGAAAGAAAGAGGTCAAGTCTCATCCACACGAGTCCGTCATGCTCTAGCTGCAGG 832
Query 828 AGATGTGAGGTATGTAACTGAGCTCCTCGGCAGACCACACAGGGTTATCTCAAGGGTGAG 887
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct 833 AGATGTGAGGTATGTAACAGAGCTCCTCGGCAGACCACACAGGGTCATCTCTCGGACAAG 892
Query 888 AACACAAGATTTAACAAGCAAAGGAAGGAGGGTCACGCTTCATACATCGTCGCTACTGAA 947
||||||||||||||| |||||| || ||||| || ||||||| ||||| |||||||| ||
Sbjct 893 AACACAAGATTTAACGAGCAAAAGAGGGAGGATCTCGCTTCAGACATCTTCGCTACTAAA 952
Query 948 TTTACCACCTGGAAATGGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAGCATCC 1007
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TTTACCACCAGGGAATGGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAGCATCC 1012
Query 1008 AATTTCGTGTAACGTTGTTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAATG 1067
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1013 AATTTCGTGTAAGGTTATTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAACG 1072
Query 1068 TTTCCACAACTCAGATGGGTCTCAAGAAGAGTTTCTACTCTTAGGGATTGAGTTCGGTTG 1127
||||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||
Sbjct 1073 TTTCCACAACTCAGATGAGTCTCAAGA-G--TTTCAACTCTTAGGGATTGAGTTCGGTTA 1129
Query 1128 ATTCACACATTGATAATCAAAAGAATA 1154
|||||||||||||||||||||||||||
Sbjct 1130 ATTCACACATTGATAATCAAAAGAATA 1156
> AT5G08340.1 | Symbols: | Nucleotidylyl transferase superfamily
protein | chr5:2683832-2685636 FORWARD LENGTH=1205
Length=1205
Score = 579 bits (313), Expect = 3e-164
Identities = 713/902 (79%), Gaps = 43/902 (5%)
Strand=Plus/Plus
Query 245 ATTGTTTCAGCCAGGGAGATGATAATCTTGAGCTTTCAGCTGAAGGGCTT-TCCCCAGTT 303
||||||||||||| |||| ||| ||| ||||||| ||| ||||||| || || |||| |
Sbjct 305 ATTGTTTCAGCCAACGAGAAGATGATCCTGAGCTTCCAGTTGAAGGG-TTATCTCCAG-T 362
Query 304 G-CAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATATCGGTCATCGAGAGCT 362
| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 363 GTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCATCGAGAGCT 422
Query 363 TGCAATCCAAGCTGCAAGAACTGGTA-CTCCATATCTATTGTCGTTTGTTGGAATGGCTG 421
| |||| |||||| |||||| ||| | ||||||||||||| || |||||||||||||| |
Sbjct 423 TACAATTCAAGCTTCAAGAATTGG-AGCTCCATATCTATTATCTTTTGTTGGAATGGCCG 481
Query 422 AAGTACTTGGTTGGAAACCTAGAGCACCGATAGTAGCCAAATGCGATAGA-AAACGGGTG 480
| |||||||||||| | || || ||||| ||||| |||||||| ||| || ||| |||||
Sbjct 482 AGGTACTTGGTTGGGAGCCCAGGGCACCTATAGTGGCCAAATGTGATCGACAAA-GGGTG 540
Query 481 CTTTCCTCTTGGGCATCGTATTGTGGTA-ACATAGCACCGGTAGAGTTTGAGATTGAATT 539
||| |||||||||| || |||||||| | ||| ||| || | ||||| |||||| |||||
Sbjct 541 CTTACCTCTTGGGCCTCATATTGTGG-AGACAGAGCGCCTGAAGAGTATGAGATAGAATT 599
Query 540 TGCCAGCGTTCGACACCTTAACCCAC-AGCAGTTTGTCGAGAAGTTGTCAAGAG-AGCTT 597
||||||||| ||||| |||| ||||| | |||||||| |||||| |||||| || ||||
Sbjct 600 TGCCAGCGTGCGACATCTTACCCCACGA-CAGTTTGTGGAGAAGCTGTCAA-AGGAGCTC 657
Query 598 AGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGCTTCTGGTGAC 657
||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||
Sbjct 658 AGAGTCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTCTGGTGAT 717
Query 658 GCCTCTGAACTTGTGAGGTTATGTAAAGAGTACGGTATCAGC-GCTTACATCATTAACTC 716
|||||||| || ||||| | || | || | ||||||| | |||| |||||| |||||
Sbjct 718 GCCTCTGAGCTAGTGAGACTGTGCGAGGAATGTGGTATCA-CTGCTTGCATCATAAACTC 776
Query 717 GGTGATGGATAAGAACCAAGTCTCTGGAAACACG-GACACAGAGGAGGACTCAAAGTCAA 775
|||||||| | ||| |||| ||| | ||| | | ||| ||| || | ||||||| |
Sbjct 777 TGTGATGGACATGAAGCAAGGCTCAGCAAAGA-GAGACTCAG-GG-G-ACTCAAA---A- 828
Query 776 AAGAAAGAGGACAAGTCTCGTCCACACGAGTCCGACATGCTCTTGCTGCAGGAGATGTGA 835
|| ||||| |||||||| || ||||| || || || |||||||| || |||||| |||
Sbjct 829 --GATAGAGGGCAAGTCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGATATGA 886
Query 836 GGTATGTAACTGAGCTCCTCGGCAGACCACA-CAGGGTTATCTCAAGGGTGAGAACACAA 894
|||| ||| | |||||||| ||||| |||| | | |||||| || || ||||| |||
Sbjct 887 GGTACGTATCAGAGCTCCTTGGCAGGGCACATC-GTCTTATCTTGAGAGTCAGAACCCAA 945
Query 895 GATTTAACAAGC-AAAGGAAGGAGGGTCACGCTTCATACATCGTCGCTACTGAATTTACC 953
||| | |||| |||||| | | ||| | | | | ||| || |||| ||||| ||
Sbjct 946 GATATGCCAAGTGAAAGGATG-ATC-TCA-G-TCCCGAGATCATCAATACTTAATTTGCC 1001
Query 954 ACCTGGAAAT-GGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAG-CATCCAATT 1011
||| || | | ||| |||| || ||||| | |||| ||||||||||| || | || | ||
Sbjct 1002 ACCAGGGA-TCGGAATTTATAAGGCATGTTTGCTTCTAGTTGGTGATGAGTCTTC-AGTT 1059
Query 1012 TCGTGTAACGTTGTTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAATGTTTC 1071
|||||| ||| ||||| |||||||| ||| || || ||||||||||||| | | | ||
Sbjct 1060 CCGTGTACCGTAGTTGTTGATACATCAAATATCCATGTAGAAACAGAGGAGGTACGACTC 1119
Query 1072 CACAACTCAGATGGGTCTCAAGAAGAGTTTCTACTCTT-AGGGATTGAGTTCGGTTGATT 1130
|| | |||| ||||||||||| |||| |||| | || | |||||||||||||| |
Sbjct 1120 TGTAATTTAGATTGGTCTCAAGAA---TTTCGACTCGTGAGTG-TTGAGTTCGGTTGAGT 1175
Query 1131 CA 1132
||
Sbjct 1176 CA 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5