BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489196
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23350.1 | Symbols: | GRAM domain-containing protein / ABA-... 935 0.0
AT5G23370.1 | Symbols: | GRAM domain-containing protein / ABA-... 885 0.0
AT5G23360.1 | Symbols: | GRAM domain-containing protein / ABA-... 780 0.0
> AT5G23350.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:7858253-7859387 REVERSE
LENGTH=1135
Length=1135
Score = 935 bits (506), Expect = 0.0
Identities = 608/658 (92%), Gaps = 4/658 (1%)
Strand=Plus/Plus
Query 1 ATGACATTGAGCAGAGTTCACCAACAAGTTATTGCATTTCCTGCTGCCAAGACTGCTACG 60
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 187 ATGACACTGAGCAGAGTTCACCAACAAGTTATTGCATTTCCTGCAGCCAAGACTGATACG 246
Query 61 ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAAGCTCCAACTCCCAACTTCTTCAAAG 120
||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 247 ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCACCAAATCCCAACTTCTTCAAAG 306
Query 121 AATTCTC-T-TTTAACAGGCAAAGGAAAATCGATGCTGCGGAAGAAGAAAACCGATAGCT 178
|| || | ||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 307 -GTT-TCATATTTGACAGGCAAAGGAAAATCGATGCTGCGAAAGAAGAAAACCGATAGCT 364
Query 179 TCACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCCAAGCTAACTGAAACAGTCAAGA 238
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 365 TCACAAACGGAGCTAGAGATCAGGACAAACTAGGACCAAAGCTAACTGAAACAGTCAAGA 424
Query 239 GAAAGCTATCTTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAGC 298
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 425 GAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATTTATAAGC 484
Query 299 GACTCTTCAAGGTCTGCAATGATGAGAAACTGTTCAAGGCATATCAATGTTACCTATCGA 358
||||||||||||||||| || | |||||||| |||||||| || ||||| || ||||| |
Sbjct 485 GACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAGGCGTACCAATGCTATCTATCCA 544
Query 359 CAACTGCAGGTCCCATCGGGGGCCTACTCTTCATCTCATCAAAGAAAATTGCATTCTGCA 418
|||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||
Sbjct 545 CAACAGCAGGTCCCATCGCAGGCCTCCTCTTCATCTCATCAAAGAAGATTGCATTTTGCA 604
Query 419 GCGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGATCTCAATAGGGTTCACTACAAAG 478
| ||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 605 GTGAAAGATCGATCAAGGTTGCTTCTCCTCAAGGAGTTCTCAGTAGGGTTCACTACAAAG 664
Query 479 TTTCAATCCCATTGTGCAAGATCAATGGAGTAAACCAGAGTCAGAACACAAAGAAGCCAT 538
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 665 TCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAGAGTCAGAACACAAAGAAGCCAT 724
Query 539 CTCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTTGACTTCTGGTTCATGGGATTTG 598
||||||||||||||||| | ||||| |||| ||| |||||||||||||||||||| |
Sbjct 725 CTCAAAAGTACCTTGAAATAGTCACAATCGATAACTTCGACTTCTGGTTCATGGGATTCG 784
Query 599 TGAGCTACCAGAAAGCTTTCAATTGTCTCGAGCAAGCGCTAAACAATGATGAGCAATA 656
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 785 TGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGCGCTAAACAATGATGAGCAATA 842
> AT5G23370.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:7863331-7864271 REVERSE
LENGTH=941
Length=941
Score = 885 bits (479), Expect = 0.0
Identities = 587/640 (92%), Gaps = 4/640 (1%)
Strand=Plus/Plus
Query 1 ATGACATTGAGCAGAGTTCACCAACAAGTTATTGCATTTCCTGCTGCCAAGACTGCTACG 60
||||||||||||||||||||||||||| | ||| |||||||||| | ||||||| || ||
Sbjct 71 ATGACATTGAGCAGAGTTCACCAACAACTCATTACATTTCCTGCCGTCAAGACTTCTCCG 130
Query 61 ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAAGCTCCAACTCCCAACTTCTTCAAAG 120
| ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 131 GCGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTTCAAATCCCAACTTCTTCAAAG 190
Query 121 AATTCTCTTT-TAACAGGCAAAGGAAAATCGATGCTGCGGAAGAAGAAAACCGATAGCTT 179
|||| ||| ||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 191 TTTTCT-TTTCTAACAGGCAAAGGAAAATCGATGCTACGAAAGAAGAAAAACGATAGCTT 249
Query 180 CACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCCAAGCTAACTGAAACAGTCAAGAG 239
||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 250 CACAAACGGAGTTAGAGATCAGGACAAGTTAGGACCAAAGCTAACCGAAACAGTCAAGAG 309
Query 240 AAAGCTATCTTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAGCG 299
||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 310 AAAACTATCCTTGGGAGCTAGGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAACG 369
Query 300 ACTCTTCAAGGTCTGCAATGATGAGAAACTGTTCAAGGCATATCAATGTTACCTATCGAC 359
|||||| |||||| || |||| |||||||| |||||||| || ||||| |||||||| ||
Sbjct 370 ACTCTTTAAGGTCAGCGATGAAGAGAAACTCTTCAAGGCGTACCAATGCTACCTATCCAC 429
Query 360 AACTGCAGGTCCCATCGGGGGCCTACTCTTCATCTCATCAAAGAAAATTGCATTCTGCAG 419
||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 430 AACCGCAGGTCCCATCGCTGGCCTACTCTTCATATCATCAAAGAAAATTGCATTCTGCAG 489
Query 420 CGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGATCTCAATAGGGTTCACTACAAAGT 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 490 CGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGAGCTCAATAGGGTTCACTACAAAGT 549
Query 480 TTCAATCCCATTGTGCAAGATCAATGGAGTAAACCAGAGTCAGAACACAAAGAAGCCATC 539
|||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 550 CTCAATCCCCTTGTGCAAGATCAATGGAGTGAACCAGAGTCAAAACACAACGAAGCCATC 609
Query 540 TCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTTGACTTCTGGTTCATGGGATT-TG 598
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 610 TCAGAAGTACCTTGAAGTAGTCACGGTCGACGGCTTTGACTTCTGGTTCATGGGATTCT- 668
Query 599 TGAGCTACCAGAAAGCTTTCAATTGTCTCGAGCAAGCGCT 638
|||||||||| ||||||||||| || ||||||||||||||
Sbjct 669 TGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCGCT 708
> AT5G23360.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:7861740-7862697 FORWARD
LENGTH=958
Length=958
Score = 780 bits (422), Expect = 0.0
Identities = 671/783 (86%), Gaps = 50/783 (6%)
Strand=Plus/Plus
Query 1 ATGACATTGAGCAGAGTTCACCAACAAGTTATTGCATTTCCTGCTGCCAAGACTGCTACG 60
|||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||
Sbjct 78 ATGACATTGAGCAGAGTTCATCAACAAGTTATTGCATTTCCTGCTGTCAATACTGCTCCG 137
Query 61 ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAAGCTCCAACTCCCAACTTCTTCAAAG 120
|| ||||||||||||| |||||||||||||||||||| ||| |||||| |
Sbjct 138 GTGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTTCAAATCCCAA------C---- 187
Query 121 AATTCTCTTTTAACAGGCAAAGGAAAATCGATGCTGCGGAAGAAGAAAACCGATAGCTTC 180
| || || |||||| |||||||| | |||||||||||||||||||||
Sbjct 188 ---T-TC--TT------CAAAGG--TTTCGATGCTTCAAAAGAAGAAAACCGATAGCTTC 233
Query 181 ACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCCAAGCTAACTGAAACAGTCAAGAGA 240
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 234 ACAAACGGAGCAAGAGATCAGGACAAGTTAGGACCCAAGCTAACCGAAACAGTAAAGAGA 293
Query 241 AAGCTATCTTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAGCGA 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAGCGA 353
Query 301 CTCTTCAAGGTCTGCAATGATGAGAAACTGTTCAAGGCATATCAATGTTACCTATCGACA 360
||||||||||||||| || | |||||||| |||||||| || ||||||||||||||||||
Sbjct 354 CTCTTCAAGGTCTGCGATAAAGAGAAACTCTTCAAGGCGTACCAATGTTACCTATCGACA 413
Query 361 ACTGCAGGTCCCATCGGGGGCCTACTCTTCATCTCATCAAAGAAAATTGCATTCTGCAGC 420
|| | |||| |||| | |||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 414 ACAGAAGGTTCCATTGCGGGCCTGCTCTTCATCTCATCAAAGAAGATTGCCTTCTGTAGC 473
Query 421 GAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGATCTCAATAGGGTTCACTACAAAGTT 480
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 474 GAAAGATCGATCAAGGTGACTTCTCCTCAAGGAGATCTCACTAGGGTTCACTACAAAGTC 533
Query 481 TCAATCCCATTGTGCAAGATCAATGGAGTAAACCAGAGTCAGAACACAAAGAAGCCATCT 540
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 534 TCAATCCCCTTGTGCAAGATCAATGGAGTGAACCAGAGTCAGAACACGAAGAAACCATCT 593
Query 541 CAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTTGACTTCTGGTTCATGGGATTTGTG 600
|| | |||||| ||||| ||||| ||||| || ||||||||||||||||||||| |||
Sbjct 594 CAGAGGTACCTAGAAGTAGTCACAGTCGATAACTATGACTTCTGGTTCATGGGATTCGTG 653
Query 601 AGCTACCAGAAAGCTTTCAATTGTCTCGAGCAAGCGCTAAACAATGATGAGCAATA---G 657
|||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||| |
Sbjct 654 AGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGCGCTAAACGAGGATGAGCAATAAACG 713
Query 658 G------T--TGA--AG---A-GG---AAA------TATATCATTTCTATTTTGACCTGT 694
| | | | || | || ||| ||||||||||||||||| ||||||
Sbjct 714 GAGGAGCTACTAATTAGTGCATGGTGGAAAAAGAAATATATCATTTCTATTTTCACCTGT 773
Query 695 TTCAATCAGAGAATGTTAGTAAAGAGCCTAGAAGAGACTGACAATATTGCTTGTACAAAC 754
||||||||| ||||||||| | ||| ||||| ||||||||||||||||| ||||||||||
Sbjct 774 TTCAATCAGGGAATGTTAGGAGAGAACCTAGTAGAGACTGACAATATTGTTTGTACAAAC 833
Query 755 TCA 757
|||
Sbjct 834 TCA 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36771395604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5