BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489199
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23380.1 | Symbols: | Protein of unknown function (DUF789) ... 1201 0.0
> AT5G23380.1 | Symbols: | Protein of unknown function (DUF789)
| chr5:7866742-7870302 FORWARD LENGTH=1110
Length=1110
Score = 1201 bits (650), Expect = 0.0
Identities = 881/991 (89%), Gaps = 22/991 (2%)
Strand=Plus/Plus
Query 1 ATGATTGGGAGGGGTAAAACTAATTTTGAGAGGTTTCTCGAATGTTCATCTCCACGTGTC 60
|||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATGGGAGAGTTAGAACTAATTTTGAGAGGTTTCTCGAATGTTCATCTCCACGTGTC 60
Query 61 CCGATTCAATATTATACTCAGAG-AGAGGG-ATCGTCTTCTTCATCATCAGTAGCTTTAG 118
|||||||||| |||||||||| | | |||| |||||||||||| ||| || ||||||| |
Sbjct 61 CCGATTCAATTTTATACTCAG-GCA-AGGGGATCGTCTTCTTCTTCACCAATAGCTTTGG 118
Query 119 GAGCTATTGAAGAAGAAGAAGTGAGAAAGCCTCGCATCGTCCTCGGA-GATATTTGGTCT 177
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 119 GAGCTATTGAAGAAGAAGAAGTGAGAAAGCCTCGCATCGTCCTCA-ATGATATTTGGTCT 177
Query 178 GCCTGTGCCGACTGGAGCACTGATGGTCTCCAAGTTCCTCTTTCGCTGGAAAACTTCGAC 237
|||||| |||||||||||| |||| || |||| ||||||||||||||||||||||||
Sbjct 178 GCCTGTAAAAACTGGAGCACTGTTGGTATCGAAGTCCCTCTTTCGCTGGAAAACTTCGAC 237
Query 238 TCCGACGTTAAACA-TCACTATCTTCCTTCACTCTCCGCCATTCAGATCTTCACCATCAA 296
||||| |||||||| | ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 238 TCCGATGTTAAACAGT-ACTATAATCCTTCACTCTCCGCCATTCAGATCTTTACCATCAA 296
Query 297 ACCCTTCCCTGATGATTCAAGGAGCTCTGCCATTGAGATAGATGCTACAGAGACAGGCTC 356
||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 297 ACCCTTCTCTGATGATTCAAGGAGCTCTGCCATTGGGATAGATGGTACAGAGACAGGATC 356
Query 357 TGCTA-AACCTGAGTCTGACAGCAACTTTAAGCCTCGGT-TTTCGGATGATC---ACTTG 411
||||| ||| ||| |||||||||||| |||| || || ||| ||||| | |||||
Sbjct 357 TGCTATAAC-TGACTCTGACAGCAACGGCAAGCTTCAGTGTTT-GGATGCTGGTGACTTG 414
Query 412 GGGTACCTTTATTTTCAATATGATGAGATA-ACAATGCCATTTAAGAGGACTACTCTAAC 470
|| |||||||||||||||||| ||||| || | || ||||||| | ||| | |||| ||
Sbjct 415 GGCTACCTTTATTTTCAATATAATGAGGTAGA-AAGGCCATTTGATAGGTTTCCTCTCAC 473
Query 471 TTTCAAGATGGAGGATTTAGCTGCGCAGCACACTGGACTGTCTAGTTTGACGAGTTCAGA 530
||||||||||| || |||||| | |||||||||||||||||||| |||||||||||||
Sbjct 474 TTTCAAGATGGCTGACCTAGCTGAGGAGCACACTGGACTGTCTAGTCTGACGAGTTCAGA 533
Query 531 TCTTTCTCCATATAGCTGGATTTCGATAGCTTGGTATCCCATTTATCCAATTCCATCAGT 590
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 534 TCTTTCTCCAAATAGCTGGATTTCGATAGCTTGGTATCCCATTTATCCAATTCCACCAGT 593
Query 591 GAGAA---TGAACGGAATATCTGCCGCTTTCCTAACGTACCATTTATTGACGCCAAACTT 647
|| | || |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 594 GATAGGCGTGGACGGGATATCTGCCGCTTTCCTAACGTACCATTTATTGAAGCCAAACTT 653
Query 648 TCCAGAAACAATTGGTAAAGATGATAAGGGGAATGAACAAGGAGGGTCAAGTACAGCAGA 707
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||
Sbjct 654 TCCAGAAACAATTGGTAAGGATGATAAGGGGAATGAACAAGGAGAGTCAAGTACACCAGA 713
Query 708 AGTTCTACTTCCTCCATTTGGAGCAGTGACTTACAAGGCCTTTGGTGATATGTGGATCAT 767
||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| ||
Sbjct 714 AGTTCTACTTCCTCCATTTGGAGCAATGACTTACAAGGCCTTTGGTAACCTGTGGATGAT 773
Query 768 GCCTGGGACATCAGATTATCAGAAGAGAGAGATGCATGAAGAATCTGCTTCCTCATGGCT 827
|||||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||
Sbjct 774 GCCTGGGACATCAGATTATCAGAACAGAGAGATGAATGAAGAATCTGCTGACTCGTGGCT 833
Query 828 GC-AAACACGCGGCTTCTCTCACAGCGATTTCAGCTTCTTCATGTCCCATAAGTTTAACG 886
| ||| |||||||||||| ||||||||||||| |||||| ||||||| ||||||| |||
Sbjct 834 GAGAAA-ACGCGGCTTCTCCCACAGCGATTTCAACTTCTTTATGTCCCGTAAGTTTTACG 892
Query 887 GTGGGCCCTACTGATGCCATCTTGCTGGTGAAATGCTAAGCCTAGCAATGGAGTCTTGTC 946
| || ||||| | |||||||||||| |||||||||||||||||| |||||||||||| ||
Sbjct 893 GCGGACCCTATTAATGCCATCTTGCAGGTGAAATGCTAAGCCTAACAATGGAGTCTTATC 952
Query 947 ATCGTATGAAAACATTTCTGCTGTAAAACAT 977
||| || ||||||||| |||||||||||||
Sbjct 953 ATCATAAAAAAACATTTATGCTGTAAAACAT 983
Score = 91.6 bits (49), Expect = 1e-17
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 977 TCTGTCTTTGGCTTCTGCTGTTCTTTACTTTTGAGGATTATTTTTCTTTAAATTTGTC 1034
|||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1053 TCTGACTTTGGATTCTGCTGTTCTTTACTTTTGAGGATTATTTTTCTTAAAATTTGTC 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50686254323
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5